data_8RHT # _model_server_result.job_id dJqiI_Iz2uU5zIjoIGrlyQ _model_server_result.datetime_utc '2024-11-21 13:28:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8RHT # _exptl.entry_id 8RHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RHT _cell.length_a 41.92 _cell.length_b 60.928 _cell.length_c 68.882 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 274 n n PA O2A NDP sing 275 n n PA O5B NDP sing 276 n n PA O3 NDP sing 277 n n O2A HOA2 NDP sing 278 n n O5B C5B NDP sing 279 n n C5B C4B NDP sing 280 n n C5B H51A NDP sing 281 n n C5B H52A NDP sing 282 n n C4B O4B NDP sing 283 n n C4B C3B NDP sing 284 n n C4B H4B NDP sing 285 n n O4B C1B NDP sing 286 n n C3B O3B NDP sing 287 n n C3B C2B NDP sing 288 n n C3B H3B NDP sing 289 n n O3B HO3A NDP sing 290 n n C2B O2B NDP sing 291 n n C2B C1B NDP sing 292 n n C2B H2B NDP sing 293 n n O2B P2B NDP sing 294 n n C1B N9A NDP sing 295 n n C1B H1B NDP sing 296 n n N9A C8A NDP sing 297 n y N9A C4A NDP sing 298 n y C8A N7A NDP doub 299 n y C8A H8A NDP sing 300 n n N7A C5A NDP sing 301 n y C5A C6A NDP sing 302 n y C5A C4A NDP doub 303 n y C6A N6A NDP sing 304 n n C6A N1A NDP doub 305 n y N6A H61A NDP sing 306 n n N6A H62A NDP sing 307 n n N1A C2A NDP sing 308 n y C2A N3A NDP doub 309 n y C2A H2A NDP sing 310 n n N3A C4A NDP sing 311 n y O3 PN NDP sing 312 n n PN O1N NDP doub 313 n n PN O2N NDP sing 314 n n PN O5D NDP sing 315 n n O2N H21N NDP sing 316 n n O5D C5D NDP sing 317 n n C5D C4D NDP sing 318 n n C5D H51N NDP sing 319 n n C5D H52N NDP sing 320 n n C4D O4D NDP sing 321 n n C4D C3D NDP sing 322 n n C4D H4D NDP sing 323 n n O4D C1D NDP sing 324 n n C3D O3D NDP sing 325 n n C3D C2D NDP sing 326 n n C3D H3D NDP sing 327 n n O3D HO3N NDP sing 328 n n C2D O2D NDP sing 329 n n C2D C1D NDP sing 330 n n C2D H2D NDP sing 331 n n O2D HO2N NDP sing 332 n n C1D N1N NDP sing 333 n n C1D H1D NDP sing 334 n n N1N C2N NDP sing 335 n n N1N C6N NDP sing 336 n n C2N C3N NDP doub 337 n n C2N H2N NDP sing 338 n n C3N C7N NDP sing 339 n n C3N C4N NDP sing 340 n n C7N O7N NDP doub 341 n n C7N N7N NDP sing 342 n n N7N H71N NDP sing 343 n n N7N H72N NDP sing 344 n n C4N C5N NDP sing 345 n n C4N H41N NDP sing 346 n n C4N H42N NDP sing 347 n n C5N C6N NDP doub 348 n n C5N H5N NDP sing 349 n n C6N H6N NDP sing 350 n n P2B O1X NDP doub 351 n n P2B O2X NDP sing 352 n n P2B O3X NDP sing 353 n n O2X HOP2 NDP sing 354 n n O3X HOP3 NDP sing 355 n n # _atom_sites.entry_id 8RHT _atom_sites.fract_transf_matrix[1][1] 0.023855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 301 250 NDP NDP . C 3 A1H0S A 1 302 251 A1H0S DH4 . D 4 HOH A 1 401 2 HOH HOH . D 4 HOH A 2 402 30 HOH HOH . D 4 HOH A 3 403 27 HOH HOH . D 4 HOH A 4 404 34 HOH HOH . D 4 HOH A 5 405 35 HOH HOH . D 4 HOH A 6 406 12 HOH HOH . D 4 HOH A 7 407 17 HOH HOH . D 4 HOH A 8 408 14 HOH HOH . D 4 HOH A 9 409 15 HOH HOH . D 4 HOH A 10 410 11 HOH HOH . D 4 HOH A 11 411 26 HOH HOH . D 4 HOH A 12 412 24 HOH HOH . D 4 HOH A 13 413 29 HOH HOH . D 4 HOH A 14 414 33 HOH HOH . D 4 HOH A 15 415 19 HOH HOH . D 4 HOH A 16 416 32 HOH HOH . D 4 HOH A 17 417 36 HOH HOH . D 4 HOH A 18 418 28 HOH HOH . D 4 HOH A 19 419 25 HOH HOH . D 4 HOH A 20 420 9 HOH HOH . D 4 HOH A 21 421 13 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 13.647 -16.829 -3.615 1 68.91 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . B 2 14.932 -16.069 -3.6 1 63.86 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . B 2 12.565 -16.403 -4.543 1 77.95 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . B 2 13.912 -18.399 -3.769 1 61.44 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . B 2 15.237 -18.908 -3.509 1 66.14 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . B 2 15.353 -20.267 -4.147 1 65.7 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . B 2 15.764 -20.131 -5.528 1 64.98 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . B 2 16.41 -21.199 -3.561 1 65.05 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . B 2 15.904 -21.699 -2.331 1 71.19 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . B 2 16.558 -22.19 -4.709 1 61.44 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . B 2 15.379 -22.95 -4.905 1 65.56 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . B 2 16.541 -21.245 -5.899 1 61.43 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . B 2 17.854 -20.769 -6.287 1 66.41 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . B 2 18.437 -19.584 -5.917 1 67.89 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . B 2 19.631 -19.417 -6.427 1 70.24 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . B 2 19.847 -20.56 -7.182 1 67.64 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . B 2 20.94 -20.987 -7.959 1 69.51 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . B 2 22.056 -20.279 -8.125 1 64.63 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . B 2 20.831 -22.19 -8.569 1 77.02 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . B 2 19.705 -22.898 -8.401 1 76.15 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . B 2 18.618 -22.598 -7.698 1 69.97 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . B 2 18.755 -21.403 -7.104 1 66.74 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . B 2 12.988 -16.833 -2.17 1 74.79 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . B 2 13.33 -15.966 -0.883 1 73.76 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . B 2 14.607 -15.253 -1.181 1 63.63 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . B 2 13.28 -16.888 0.289 1 82.46 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . B 2 12.082 -14.935 -0.826 1 79.03 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . B 2 10.675 -15.369 -0.862 1 82.15 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . B 2 9.757 -14.257 -0.39 1 83.73 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . B 2 9.747 -13.178 -1.358 1 87.17 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . B 2 8.276 -14.605 -0.142 1 87.68 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . B 2 7.845 -14.157 1.139 1 92.76 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . B 2 7.527 -13.813 -1.221 1 91.87 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . B 2 6.228 -13.41 -0.789 1 102.16 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . B 2 8.455 -12.624 -1.453 1 83.06 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . B 2 8.314 -11.959 -2.788 1 75.66 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . B 2 7.872 -10.662 -2.865 1 72.74 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . B 2 7.936 -9.918 -4.022 1 68.4 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . B 2 7.626 -8.48 -3.957 1 66.67 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . B 2 7.935 -7.765 -4.912 1 67.8 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . B 2 7.008 -7.997 -2.886 1 66.52 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . B 2 8.312 -10.593 -5.292 1 70.07 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . B 2 8.641 -12.029 -5.13 1 80.27 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . B 2 8.654 -12.625 -3.951 1 79.26 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . B 2 15.456 -24.451 -4.353 1 64.7 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . B 2 16.045 -25.306 -5.457 1 58.39 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . B 2 16.325 -24.48 -3.107 1 70.71 ? O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . B 2 14 -24.775 -4.052 1 51.29 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #