data_8RI5 # _model_server_result.job_id BoMHmRHoJUFY1q3p_CzbiQ _model_server_result.datetime_utc '2024-12-12 19:42:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ri5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 8RI5 # _exptl.entry_id 8RI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RI5 _cell.length_a 25.474 _cell.length_b 40.221 _cell.length_c 65.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 101 1_555 F O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc2 C MG MG . A MG 101 1_555 F O HOH . A HOH 216 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 C MG MG . A MG 101 1_555 F O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 C MG MG . A MG 101 1_555 F O HOH . A HOH 221 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 C MG MG . A MG 101 1_555 F O HOH . A HOH 231 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 C MG MG . A MG 101 1_555 G O HOH . B HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc7 B N7 DG 4 B DG 16 1_555 E PT PT . B PT 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 D N NH3 . B NH3 101 1_555 E PT PT . B PT 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RI5 _atom_sites.fract_transf_matrix[1][1] 0.039256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 101 13 MG MG . D 3 NH3 B 1 101 101 NH3 NH3 . E 4 PT B 1 102 1 PT PT . F 5 HOH A 1 201 77 HOH HOH . F 5 HOH A 2 202 86 HOH HOH . F 5 HOH A 3 203 52 HOH HOH . F 5 HOH A 4 204 50 HOH HOH . F 5 HOH A 5 205 18 HOH HOH . F 5 HOH A 6 206 93 HOH HOH . F 5 HOH A 7 207 108 HOH HOH . F 5 HOH A 8 208 24 HOH HOH . F 5 HOH A 9 209 72 HOH HOH . F 5 HOH A 10 210 83 HOH HOH . F 5 HOH A 11 211 25 HOH HOH . F 5 HOH A 12 212 102 HOH HOH . F 5 HOH A 13 213 5 HOH HOH . F 5 HOH A 14 214 39 HOH HOH . F 5 HOH A 15 215 2 HOH HOH . F 5 HOH A 16 216 85 HOH HOH . F 5 HOH A 17 217 89 HOH HOH . F 5 HOH A 18 218 41 HOH HOH . F 5 HOH A 19 219 96 HOH HOH . F 5 HOH A 20 220 81 HOH HOH . F 5 HOH A 21 221 84 HOH HOH . F 5 HOH A 22 222 49 HOH HOH . F 5 HOH A 23 223 45 HOH HOH . F 5 HOH A 24 224 106 HOH HOH . F 5 HOH A 25 225 7 HOH HOH . F 5 HOH A 26 226 103 HOH HOH . F 5 HOH A 27 227 109 HOH HOH . F 5 HOH A 28 228 4 HOH HOH . F 5 HOH A 29 229 92 HOH HOH . F 5 HOH A 30 230 104 HOH HOH . F 5 HOH A 31 231 82 HOH HOH . F 5 HOH A 32 232 101 HOH HOH . F 5 HOH A 33 233 36 HOH HOH . F 5 HOH A 34 234 116 HOH HOH . F 5 HOH A 35 235 22 HOH HOH . F 5 HOH A 36 236 48 HOH HOH . F 5 HOH A 37 237 38 HOH HOH . F 5 HOH A 38 238 3 HOH HOH . F 5 HOH A 39 239 73 HOH HOH . F 5 HOH A 40 240 70 HOH HOH . F 5 HOH A 41 241 26 HOH HOH . F 5 HOH A 42 242 51 HOH HOH . F 5 HOH A 43 243 6 HOH HOH . F 5 HOH A 44 244 80 HOH HOH . F 5 HOH A 45 245 23 HOH HOH . F 5 HOH A 46 246 95 HOH HOH . F 5 HOH A 47 247 40 HOH HOH . F 5 HOH A 48 248 19 HOH HOH . F 5 HOH A 49 249 67 HOH HOH . F 5 HOH A 50 250 74 HOH HOH . F 5 HOH A 51 251 17 HOH HOH . F 5 HOH A 52 252 59 HOH HOH . F 5 HOH A 53 253 107 HOH HOH . F 5 HOH A 54 254 97 HOH HOH . F 5 HOH A 55 255 20 HOH HOH . F 5 HOH A 56 256 35 HOH HOH . F 5 HOH A 57 257 11 HOH HOH . F 5 HOH A 58 258 15 HOH HOH . F 5 HOH A 59 259 87 HOH HOH . F 5 HOH A 60 260 53 HOH HOH . G 5 HOH B 1 201 31 HOH HOH . G 5 HOH B 2 202 117 HOH HOH . G 5 HOH B 3 203 54 HOH HOH . G 5 HOH B 4 204 32 HOH HOH . G 5 HOH B 5 205 29 HOH HOH . G 5 HOH B 6 206 114 HOH HOH . G 5 HOH B 7 207 64 HOH HOH . G 5 HOH B 8 208 75 HOH HOH . G 5 HOH B 9 209 121 HOH HOH . G 5 HOH B 10 210 90 HOH HOH . G 5 HOH B 11 211 27 HOH HOH . G 5 HOH B 12 212 16 HOH HOH . G 5 HOH B 13 213 58 HOH HOH . G 5 HOH B 14 214 60 HOH HOH . G 5 HOH B 15 215 122 HOH HOH . G 5 HOH B 16 216 21 HOH HOH . G 5 HOH B 17 217 43 HOH HOH . G 5 HOH B 18 218 105 HOH HOH . G 5 HOH B 19 219 13 HOH HOH . G 5 HOH B 20 220 9 HOH HOH . G 5 HOH B 21 221 94 HOH HOH . G 5 HOH B 22 222 78 HOH HOH . G 5 HOH B 23 223 115 HOH HOH . G 5 HOH B 24 224 98 HOH HOH . G 5 HOH B 25 225 12 HOH HOH . G 5 HOH B 26 226 56 HOH HOH . G 5 HOH B 27 227 10 HOH HOH . G 5 HOH B 28 228 1 HOH HOH . G 5 HOH B 29 229 71 HOH HOH . G 5 HOH B 30 230 42 HOH HOH . G 5 HOH B 31 231 57 HOH HOH . G 5 HOH B 32 232 28 HOH HOH . G 5 HOH B 33 233 8 HOH HOH . G 5 HOH B 34 234 30 HOH HOH . G 5 HOH B 35 235 46 HOH HOH . G 5 HOH B 36 236 33 HOH HOH . G 5 HOH B 37 237 79 HOH HOH . G 5 HOH B 38 238 88 HOH HOH . G 5 HOH B 39 239 124 HOH HOH . G 5 HOH B 40 240 110 HOH HOH . G 5 HOH B 41 241 69 HOH HOH . G 5 HOH B 42 242 55 HOH HOH . G 5 HOH B 43 243 14 HOH HOH . G 5 HOH B 44 244 99 HOH HOH . G 5 HOH B 45 245 65 HOH HOH . G 5 HOH B 46 246 37 HOH HOH . G 5 HOH B 47 247 76 HOH HOH . G 5 HOH B 48 248 119 HOH HOH . G 5 HOH B 49 249 34 HOH HOH . G 5 HOH B 50 250 62 HOH HOH . G 5 HOH B 51 251 68 HOH HOH . G 5 HOH B 52 252 44 HOH HOH . G 5 HOH B 53 253 120 HOH HOH . G 5 HOH B 54 254 112 HOH HOH . G 5 HOH B 55 255 123 HOH HOH . G 5 HOH B 56 256 63 HOH HOH . G 5 HOH B 57 257 113 HOH HOH . G 5 HOH B 58 258 91 HOH HOH . G 5 HOH B 59 259 61 HOH HOH . G 5 HOH B 60 260 111 HOH HOH . G 5 HOH B 61 261 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 16.88 _atom_site.Cartn_y 14.77 _atom_site.Cartn_z 2.149 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 38.83 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #