data_8RIJ # _model_server_result.job_id z8VZhGy8Dgjt74F1r0ow0Q _model_server_result.datetime_utc '2025-01-11 07:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 8RIJ # _exptl.entry_id 8RIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RIJ _cell.length_a 44.245 _cell.length_b 62.986 _cell.length_c 59.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 19 A ASP 124 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc2 A OD2 ASP 19 A ASP 124 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A O ASP 53 A ASP 158 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A NE2 HIS 63 A HIS 168 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 A OD2 ASP 65 A ASP 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 A OD1 ASP 70 A ASP 175 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 A O GLY 71 A GLY 176 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc8 A O GLY 73 A GLY 178 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc9 A O ILE 75 A ILE 180 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 A NE2 HIS 78 A HIS 183 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc11 A O GLY 85 A GLY 190 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc12 A O GLY 87 A GLY 192 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc13 A OD1 ASP 89 A ASP 194 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc14 A ND1 HIS 91 A HIS 196 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc15 A OD2 ASP 93 A ASP 198 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc16 A O GLU 94 A GLU 199 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc17 A OE2 GLU 94 A GLU 199 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc18 A OE2 GLU 96 A GLU 201 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 A O GLU 96 A GLU 201 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc20 A NE2 HIS 113 A HIS 218 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc21 A NE2 HIS 117 A HIS 222 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc22 A NE2 HIS 123 A HIS 228 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 G N3 A1H07 . A A1H07 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc24 E CA CA . A CA 304 1_555 J O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc25 E CA CA . A CA 304 1_555 J O HOH . A HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc26 F CA CA . A CA 305 1_555 J O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc27 F CA CA . A CA 305 1_555 J O HOH . A HOH 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RIJ _atom_sites.fract_transf_matrix[1][1] 0.022601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 400 ZN ZN . C 2 ZN A 1 302 401 ZN ZN . D 3 CA A 1 303 402 CA CA . E 3 CA A 1 304 403 CA CA . F 3 CA A 1 305 404 CA CA . G 4 A1H07 A 1 306 1001 A1H07 INX . H 5 PEG A 1 307 1 PEG PEG . I 6 CL A 1 308 2 CL CL . J 7 HOH A 1 401 11 HOH HOH . J 7 HOH A 2 402 9 HOH HOH . J 7 HOH A 3 403 29 HOH HOH . J 7 HOH A 4 404 58 HOH HOH . J 7 HOH A 5 405 17 HOH HOH . J 7 HOH A 6 406 97 HOH HOH . J 7 HOH A 7 407 100 HOH HOH . J 7 HOH A 8 408 36 HOH HOH . J 7 HOH A 9 409 106 HOH HOH . J 7 HOH A 10 410 85 HOH HOH . J 7 HOH A 11 411 117 HOH HOH . J 7 HOH A 12 412 41 HOH HOH . J 7 HOH A 13 413 28 HOH HOH . J 7 HOH A 14 414 107 HOH HOH . J 7 HOH A 15 415 26 HOH HOH . J 7 HOH A 16 416 73 HOH HOH . J 7 HOH A 17 417 61 HOH HOH . J 7 HOH A 18 418 33 HOH HOH . J 7 HOH A 19 419 3 HOH HOH . J 7 HOH A 20 420 79 HOH HOH . J 7 HOH A 21 421 86 HOH HOH . J 7 HOH A 22 422 34 HOH HOH . J 7 HOH A 23 423 84 HOH HOH . J 7 HOH A 24 424 25 HOH HOH . J 7 HOH A 25 425 22 HOH HOH . J 7 HOH A 26 426 134 HOH HOH . J 7 HOH A 27 427 37 HOH HOH . J 7 HOH A 28 428 35 HOH HOH . J 7 HOH A 29 429 54 HOH HOH . J 7 HOH A 30 430 43 HOH HOH . J 7 HOH A 31 431 121 HOH HOH . J 7 HOH A 32 432 63 HOH HOH . J 7 HOH A 33 433 64 HOH HOH . J 7 HOH A 34 434 60 HOH HOH . J 7 HOH A 35 435 46 HOH HOH . J 7 HOH A 36 436 65 HOH HOH . J 7 HOH A 37 437 87 HOH HOH . J 7 HOH A 38 438 38 HOH HOH . J 7 HOH A 39 439 83 HOH HOH . J 7 HOH A 40 440 70 HOH HOH . J 7 HOH A 41 441 113 HOH HOH . J 7 HOH A 42 442 104 HOH HOH . J 7 HOH A 43 443 18 HOH HOH . J 7 HOH A 44 444 23 HOH HOH . J 7 HOH A 45 445 42 HOH HOH . J 7 HOH A 46 446 5 HOH HOH . J 7 HOH A 47 447 89 HOH HOH . J 7 HOH A 48 448 50 HOH HOH . J 7 HOH A 49 449 72 HOH HOH . J 7 HOH A 50 450 88 HOH HOH . J 7 HOH A 51 451 8 HOH HOH . J 7 HOH A 52 452 6 HOH HOH . J 7 HOH A 53 453 122 HOH HOH . J 7 HOH A 54 454 90 HOH HOH . J 7 HOH A 55 455 52 HOH HOH . J 7 HOH A 56 456 92 HOH HOH . J 7 HOH A 57 457 116 HOH HOH . J 7 HOH A 58 458 67 HOH HOH . J 7 HOH A 59 459 12 HOH HOH . J 7 HOH A 60 460 14 HOH HOH . J 7 HOH A 61 461 81 HOH HOH . J 7 HOH A 62 462 45 HOH HOH . J 7 HOH A 63 463 49 HOH HOH . J 7 HOH A 64 464 32 HOH HOH . J 7 HOH A 65 465 56 HOH HOH . J 7 HOH A 66 466 19 HOH HOH . J 7 HOH A 67 467 47 HOH HOH . J 7 HOH A 68 468 44 HOH HOH . J 7 HOH A 69 469 102 HOH HOH . J 7 HOH A 70 470 115 HOH HOH . J 7 HOH A 71 471 109 HOH HOH . J 7 HOH A 72 472 53 HOH HOH . J 7 HOH A 73 473 75 HOH HOH . J 7 HOH A 74 474 16 HOH HOH . J 7 HOH A 75 475 80 HOH HOH . J 7 HOH A 76 476 27 HOH HOH . J 7 HOH A 77 477 20 HOH HOH . J 7 HOH A 78 478 66 HOH HOH . J 7 HOH A 79 479 110 HOH HOH . J 7 HOH A 80 480 1 HOH HOH . J 7 HOH A 81 481 21 HOH HOH . J 7 HOH A 82 482 119 HOH HOH . J 7 HOH A 83 483 71 HOH HOH . J 7 HOH A 84 484 15 HOH HOH . J 7 HOH A 85 485 24 HOH HOH . J 7 HOH A 86 486 114 HOH HOH . J 7 HOH A 87 487 57 HOH HOH . J 7 HOH A 88 488 13 HOH HOH . J 7 HOH A 89 489 10 HOH HOH . J 7 HOH A 90 490 120 HOH HOH . J 7 HOH A 91 491 124 HOH HOH . J 7 HOH A 92 492 94 HOH HOH . J 7 HOH A 93 493 7 HOH HOH . J 7 HOH A 94 494 135 HOH HOH . J 7 HOH A 95 495 4 HOH HOH . J 7 HOH A 96 496 95 HOH HOH . J 7 HOH A 97 497 108 HOH HOH . J 7 HOH A 98 498 101 HOH HOH . J 7 HOH A 99 499 98 HOH HOH . J 7 HOH A 100 500 136 HOH HOH . J 7 HOH A 101 501 76 HOH HOH . J 7 HOH A 102 502 103 HOH HOH . J 7 HOH A 103 503 123 HOH HOH . J 7 HOH A 104 504 129 HOH HOH . J 7 HOH A 105 505 132 HOH HOH . J 7 HOH A 106 506 126 HOH HOH . J 7 HOH A 107 507 128 HOH HOH . J 7 HOH A 108 508 48 HOH HOH . J 7 HOH A 109 509 40 HOH HOH . J 7 HOH A 110 510 99 HOH HOH . J 7 HOH A 111 511 74 HOH HOH . J 7 HOH A 112 512 130 HOH HOH . J 7 HOH A 113 513 125 HOH HOH . J 7 HOH A 114 514 127 HOH HOH . J 7 HOH A 115 515 39 HOH HOH . J 7 HOH A 116 516 111 HOH HOH . J 7 HOH A 117 517 55 HOH HOH . J 7 HOH A 118 518 31 HOH HOH . J 7 HOH A 119 519 77 HOH HOH . J 7 HOH A 120 520 105 HOH HOH . J 7 HOH A 121 521 131 HOH HOH . J 7 HOH A 122 522 112 HOH HOH . J 7 HOH A 123 523 78 HOH HOH . J 7 HOH A 124 524 133 HOH HOH . J 7 HOH A 125 525 82 HOH HOH . J 7 HOH A 126 526 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.493 _atom_site.Cartn_y 9.084 _atom_site.Cartn_z 0.453 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.56 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #