data_8RIS # _model_server_result.job_id uLS7ni_cdIFNkXBcA2UnBw _model_server_result.datetime_utc '2025-01-12 05:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ris # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 8RIS # _exptl.entry_id 8RIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RIS _cell.length_a 104.306 _cell.length_b 104.306 _cell.length_c 70.807 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 202 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 386 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.129 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 8RIS _atom_sites.fract_transf_matrix[1][1] 0.009587 _atom_sites.fract_transf_matrix[1][2] 0.005535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 501 455 1PE LIG . C 3 NA A 1 502 456 NA NA . D 4 GOL A 1 503 457 GOL GOL . E 4 GOL A 1 504 458 GOL GOL . F 5 EDO A 1 505 459 EDO EDO . G 5 EDO A 1 506 460 EDO EDO . H 5 EDO A 1 507 461 EDO EDO . I 6 HOH A 1 601 60 HOH HOH . I 6 HOH A 2 602 6 HOH HOH . I 6 HOH A 3 603 8 HOH HOH . I 6 HOH A 4 604 21 HOH HOH . I 6 HOH A 5 605 45 HOH HOH . I 6 HOH A 6 606 40 HOH HOH . I 6 HOH A 7 607 32 HOH HOH . I 6 HOH A 8 608 36 HOH HOH . I 6 HOH A 9 609 9 HOH HOH . I 6 HOH A 10 610 26 HOH HOH . I 6 HOH A 11 611 7 HOH HOH . I 6 HOH A 12 612 3 HOH HOH . I 6 HOH A 13 613 50 HOH HOH . I 6 HOH A 14 614 54 HOH HOH . I 6 HOH A 15 615 49 HOH HOH . I 6 HOH A 16 616 2 HOH HOH . I 6 HOH A 17 617 5 HOH HOH . I 6 HOH A 18 618 46 HOH HOH . I 6 HOH A 19 619 30 HOH HOH . I 6 HOH A 20 620 17 HOH HOH . I 6 HOH A 21 621 44 HOH HOH . I 6 HOH A 22 622 14 HOH HOH . I 6 HOH A 23 623 39 HOH HOH . I 6 HOH A 24 624 20 HOH HOH . I 6 HOH A 25 625 55 HOH HOH . I 6 HOH A 26 626 43 HOH HOH . I 6 HOH A 27 627 58 HOH HOH . I 6 HOH A 28 628 4 HOH HOH . I 6 HOH A 29 629 23 HOH HOH . I 6 HOH A 30 630 61 HOH HOH . I 6 HOH A 31 631 57 HOH HOH . I 6 HOH A 32 632 24 HOH HOH . I 6 HOH A 33 633 15 HOH HOH . I 6 HOH A 34 634 56 HOH HOH . I 6 HOH A 35 635 16 HOH HOH . I 6 HOH A 36 636 1 HOH HOH . I 6 HOH A 37 637 42 HOH HOH . I 6 HOH A 38 638 12 HOH HOH . I 6 HOH A 39 639 29 HOH HOH . I 6 HOH A 40 640 33 HOH HOH . I 6 HOH A 41 641 11 HOH HOH . I 6 HOH A 42 642 13 HOH HOH . I 6 HOH A 43 643 27 HOH HOH . I 6 HOH A 44 644 52 HOH HOH . I 6 HOH A 45 645 28 HOH HOH . I 6 HOH A 46 646 18 HOH HOH . I 6 HOH A 47 647 51 HOH HOH . I 6 HOH A 48 648 59 HOH HOH . I 6 HOH A 49 649 10 HOH HOH . I 6 HOH A 50 650 22 HOH HOH . I 6 HOH A 51 651 37 HOH HOH . I 6 HOH A 52 652 34 HOH HOH . I 6 HOH A 53 653 47 HOH HOH . I 6 HOH A 54 654 38 HOH HOH . I 6 HOH A 55 655 62 HOH HOH . I 6 HOH A 56 656 25 HOH HOH . I 6 HOH A 57 657 64 HOH HOH . I 6 HOH A 58 658 41 HOH HOH . I 6 HOH A 59 659 31 HOH HOH . I 6 HOH A 60 660 65 HOH HOH . I 6 HOH A 61 661 35 HOH HOH . I 6 HOH A 62 662 63 HOH HOH . I 6 HOH A 63 663 53 HOH HOH . I 6 HOH A 64 664 19 HOH HOH . I 6 HOH A 65 665 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -2.477 -52.345 5.856 1 79.31 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 5 -2.018 -53.692 6.017 1 85.28 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 5 -1.297 -51.389 5.978 1 84.32 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 5 -1.746 -50.046 5.763 1 90.12 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #