data_8RIY
#
_model_server_result.job_id            3Ym1Z5UXssrjyPbiwfIYSw 
_model_server_result.datetime_utc      '2024-12-02 05:49:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8riy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8RIY 
#
_exptl.entry_id    8RIY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              400.476 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(1-methylpiperidin-4-yl)-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8RIY 
_cell.length_a            60.605 
_cell.length_b            60.605 
_cell.length_c            502.608 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H24 N6 O' 
_chem_comp.formula_weight    400.476 
_chem_comp.id                W0O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(1-methylpiperidin-4-yl)-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 W0O sing 376 n n 
C2 N1 W0O sing 377 n n 
C2 C3 W0O sing 378 n n 
N1 C4 W0O sing 379 n n 
C4 C5 W0O sing 380 n n 
C3 C6 W0O sing 381 n n 
C6 C5 W0O sing 382 n n 
C6 N2 W0O sing 383 n n 
N2 N6 W0O sing 384 n y 
N2 C7 W0O sing 385 n y 
N6 C11 W0O doub 386 n y 
C7 N3 W0O doub 387 n y 
C7 C10 W0O sing 388 n y 
N3 C8 W0O sing 389 n y 
C11 C10 W0O sing 390 n y 
C11 C12 W0O sing 391 n n 
C10 C9 W0O doub 392 n y 
C8 N4 W0O doub 393 n y 
C23 C12 W0O doub 394 n y 
C23 C22 W0O sing 395 n y 
C12 C13 W0O sing 396 n y 
C18 C17 W0O doub 397 n y 
C18 C19 W0O sing 398 n y 
C17 C16 W0O sing 399 n y 
C22 C15 W0O doub 400 n y 
C13 C14 W0O doub 401 n y 
C9 N4 W0O sing 402 n y 
C9 N5 W0O sing 403 n n 
C15 C14 W0O sing 404 n y 
C15 O1 W0O sing 405 n n 
C19 C20 W0O doub 406 n y 
C16 O1 W0O sing 407 n n 
C16 C21 W0O doub 408 n y 
C20 C21 W0O sing 409 n y 
C1 H1 W0O sing 410 n n 
C1 H2 W0O sing 411 n n 
C1 H3 W0O sing 412 n n 
C2 H4 W0O sing 413 n n 
C2 H5 W0O sing 414 n n 
C3 H6 W0O sing 415 n n 
C3 H7 W0O sing 416 n n 
C4 H8 W0O sing 417 n n 
C4 H9 W0O sing 418 n n 
C8 H10 W0O sing 419 n n 
C13 H11 W0O sing 420 n n 
C14 H12 W0O sing 421 n n 
C17 H13 W0O sing 422 n n 
C18 H14 W0O sing 423 n n 
C19 H15 W0O sing 424 n n 
C20 H16 W0O sing 425 n n 
C22 H17 W0O sing 426 n n 
C23 H18 W0O sing 427 n n 
C21 H19 W0O sing 428 n n 
C5 H20 W0O sing 429 n n 
C5 H21 W0O sing 430 n n 
C6 H22 W0O sing 431 n n 
N5 H24 W0O sing 432 n n 
N5 H25 W0O sing 433 n n 
#
_atom_sites.entry_id                     8RIY 
_atom_sites.fract_transf_matrix[1][1]    0.0165 
_atom_sites.fract_transf_matrix[1][2]    0.009526 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019053 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 W0O AAA 1 301 301 W0O 034 . 
D 2 W0O BBB 1 301 301 W0O 034 . 
E 3 HOH AAA 1 401 31 HOH HOH . 
E 3 HOH AAA 2 402 3 HOH HOH . 
E 3 HOH AAA 3 403 25 HOH HOH . 
E 3 HOH AAA 4 404 9 HOH HOH . 
E 3 HOH AAA 5 405 26 HOH HOH . 
E 3 HOH AAA 6 406 24 HOH HOH . 
E 3 HOH AAA 7 407 23 HOH HOH . 
E 3 HOH AAA 8 408 20 HOH HOH . 
E 3 HOH AAA 9 409 13 HOH HOH . 
E 3 HOH AAA 10 410 5 HOH HOH . 
E 3 HOH AAA 11 411 15 HOH HOH . 
F 3 HOH BBB 1 401 1 HOH HOH . 
F 3 HOH BBB 2 402 30 HOH HOH . 
F 3 HOH BBB 3 403 29 HOH HOH . 
F 3 HOH BBB 4 404 4 HOH HOH . 
F 3 HOH BBB 5 405 6 HOH HOH . 
F 3 HOH BBB 6 406 28 HOH HOH . 
F 3 HOH BBB 7 407 33 HOH HOH . 
F 3 HOH BBB 8 408 14 HOH HOH . 
F 3 HOH BBB 9 409 7 HOH HOH . 
F 3 HOH BBB 10 410 2 HOH HOH . 
F 3 HOH BBB 11 411 32 HOH HOH . 
F 3 HOH BBB 12 412 22 HOH HOH . 
F 3 HOH BBB 13 413 17 HOH HOH . 
F 3 HOH BBB 14 414 11 HOH HOH . 
F 3 HOH BBB 15 415 12 HOH HOH . 
F 3 HOH BBB 16 416 34 HOH HOH . 
F 3 HOH BBB 17 417 21 HOH HOH . 
F 3 HOH BBB 18 418 19 HOH HOH . 
F 3 HOH BBB 19 419 18 HOH HOH . 
F 3 HOH BBB 20 420 27 HOH HOH . 
F 3 HOH BBB 21 421 8 HOH HOH . 
F 3 HOH BBB 22 422 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 W0O . . . C 2 -27.166 2.575 4.455 1 58.58 0 C1 W0O 301 AAA 1 
HETATM 2 C C2 W0O . . . C 2 -28.394 4.223 3.185 1 56.89 0 C2 W0O 301 AAA 1 
HETATM 3 C C3 W0O . . . C 2 -29.128 5.558 3.196 1 57.51 0 C3 W0O 301 AAA 1 
HETATM 4 C C4 W0O . . . C 2 -27.007 4.927 5.069 1 59.31 0 C4 W0O 301 AAA 1 
HETATM 5 N N6 W0O . . . C 2 -29.753 8.376 4.714 1 47.78 0 N6 W0O 301 AAA 1 
HETATM 6 C C7 W0O . . . C 2 -28.834 8.911 2.753 1 45.21 0 C7 W0O 301 AAA 1 
HETATM 7 C C8 W0O . . . C 2 -28.268 9.995 0.908 1 45.42 0 C8 W0O 301 AAA 1 
HETATM 8 C C9 W0O . . . C 2 -29.721 11.099 2.31 1 41.59 0 C9 W0O 301 AAA 1 
HETATM 9 C C11 W0O . . . C 2 -30.215 9.585 4.4 1 46.61 0 C11 W0O 301 AAA 1 
HETATM 10 C C12 W0O . . . C 2 -31.129 10.291 5.327 1 47.07 0 C12 W0O 301 AAA 1 
HETATM 11 C C13 W0O . . . C 2 -32.419 9.828 5.598 1 45.69 0 C13 W0O 301 AAA 1 
HETATM 12 C C14 W0O . . . C 2 -33.258 10.525 6.456 1 45.33 0 C14 W0O 301 AAA 1 
HETATM 13 C C15 W0O . . . C 2 -32.81 11.687 7.059 1 45.84 0 C15 W0O 301 AAA 1 
HETATM 14 C C16 W0O . . . C 2 -34.779 12.119 8.463 1 51.02 0 C16 W0O 301 AAA 1 
HETATM 15 C C17 W0O . . . C 2 -34.904 10.962 9.197 1 53.66 0 C17 W0O 301 AAA 1 
HETATM 16 C C18 W0O . . . C 2 -36.143 10.627 9.722 1 55.3 0 C18 W0O 301 AAA 1 
HETATM 17 C C19 W0O . . . C 2 -37.233 11.44 9.515 1 55.5 0 C19 W0O 301 AAA 1 
HETATM 18 C C20 W0O . . . C 2 -37.086 12.599 8.787 1 53.86 0 C20 W0O 301 AAA 1 
HETATM 19 C C22 W0O . . . C 2 -31.543 12.161 6.807 1 44.1 0 C22 W0O 301 AAA 1 
HETATM 20 C C23 W0O . . . C 2 -30.707 11.465 5.952 1 46.22 0 C23 W0O 301 AAA 1 
HETATM 21 C C10 W0O . . . C 2 -29.657 9.982 3.172 1 44.13 0 C10 W0O 301 AAA 1 
HETATM 22 C C21 W0O . . . C 2 -35.853 12.954 8.258 1 51.81 0 C21 W0O 301 AAA 1 
HETATM 23 C C5 W0O . . . C 2 -27.695 6.288 5.111 1 56.76 0 C5 W0O 301 AAA 1 
HETATM 24 C C6 W0O . . . C 2 -28.217 6.656 3.726 1 53.9 0 C6 W0O 301 AAA 1 
HETATM 25 N N1 W0O . . . C 2 -27.881 3.872 4.516 1 58.65 0 N1 W0O 301 AAA 1 
HETATM 26 N N2 W0O . . . C 2 -28.902 7.961 3.713 1 49.13 0 N2 W0O 301 AAA 1 
HETATM 27 N N3 W0O . . . C 2 -28.118 8.884 1.622 1 43.26 0 N3 W0O 301 AAA 1 
HETATM 28 N N4 W0O . . . C 2 -29.013 11.08 1.167 1 42.98 0 N4 W0O 301 AAA 1 
HETATM 29 N N5 W0O . . . C 2 -30.46 12.18 2.569 1 40.86 0 N5 W0O 301 AAA 1 
HETATM 30 O O1 W0O . . . C 2 -33.542 12.483 7.94 1 47.6 0 O1 W0O 301 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           30 
#