data_8RJ2 # _model_server_result.job_id c3k2YgDgZcKfVWvHYqsraQ _model_server_result.datetime_utc '2024-11-23 22:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8RJ2 # _exptl.entry_id 8RJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.15 _cell.angle_gamma 90 _cell.entry_id 8RJ2 _cell.length_a 42.067 _cell.length_b 41.148 _cell.length_c 72.028 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 E N8 YNF . A YNF 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 E S7 YNF . A YNF 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 106 n n S C1 DMS sing 107 n n S C2 DMS sing 108 n n C1 H11 DMS sing 109 n n C1 H12 DMS sing 110 n n C1 H13 DMS sing 111 n n C2 H21 DMS sing 112 n n C2 H22 DMS sing 113 n n C2 H23 DMS sing 114 n n # _atom_sites.entry_id 8RJ2 _atom_sites.fract_transf_matrix[1][1] 0.023772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005993 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 DMS A 1 302 1 DMS DMS . D 4 BCN A 1 303 2 BCN BCN . E 5 YNF A 1 304 1 YNF EA5 . F 6 HOH A 1 401 153 HOH HOH . F 6 HOH A 2 402 148 HOH HOH . F 6 HOH A 3 403 96 HOH HOH . F 6 HOH A 4 404 40 HOH HOH . F 6 HOH A 5 405 124 HOH HOH . F 6 HOH A 6 406 220 HOH HOH . F 6 HOH A 7 407 166 HOH HOH . F 6 HOH A 8 408 184 HOH HOH . F 6 HOH A 9 409 222 HOH HOH . F 6 HOH A 10 410 241 HOH HOH . F 6 HOH A 11 411 92 HOH HOH . F 6 HOH A 12 412 174 HOH HOH . F 6 HOH A 13 413 176 HOH HOH . F 6 HOH A 14 414 150 HOH HOH . F 6 HOH A 15 415 71 HOH HOH . F 6 HOH A 16 416 186 HOH HOH . F 6 HOH A 17 417 67 HOH HOH . F 6 HOH A 18 418 177 HOH HOH . F 6 HOH A 19 419 112 HOH HOH . F 6 HOH A 20 420 125 HOH HOH . F 6 HOH A 21 421 113 HOH HOH . F 6 HOH A 22 422 154 HOH HOH . F 6 HOH A 23 423 145 HOH HOH . F 6 HOH A 24 424 243 HOH HOH . F 6 HOH A 25 425 251 HOH HOH . F 6 HOH A 26 426 233 HOH HOH . F 6 HOH A 27 427 182 HOH HOH . F 6 HOH A 28 428 64 HOH HOH . F 6 HOH A 29 429 191 HOH HOH . F 6 HOH A 30 430 50 HOH HOH . F 6 HOH A 31 431 188 HOH HOH . F 6 HOH A 32 432 211 HOH HOH . F 6 HOH A 33 433 4 HOH HOH . F 6 HOH A 34 434 190 HOH HOH . F 6 HOH A 35 435 172 HOH HOH . F 6 HOH A 36 436 76 HOH HOH . F 6 HOH A 37 437 141 HOH HOH . F 6 HOH A 38 438 15 HOH HOH . F 6 HOH A 39 439 21 HOH HOH . F 6 HOH A 40 440 60 HOH HOH . F 6 HOH A 41 441 216 HOH HOH . F 6 HOH A 42 442 26 HOH HOH . F 6 HOH A 43 443 25 HOH HOH . F 6 HOH A 44 444 6 HOH HOH . F 6 HOH A 45 445 202 HOH HOH . F 6 HOH A 46 446 183 HOH HOH . F 6 HOH A 47 447 230 HOH HOH . F 6 HOH A 48 448 39 HOH HOH . F 6 HOH A 49 449 234 HOH HOH . F 6 HOH A 50 450 86 HOH HOH . F 6 HOH A 51 451 135 HOH HOH . F 6 HOH A 52 452 180 HOH HOH . F 6 HOH A 53 453 63 HOH HOH . F 6 HOH A 54 454 70 HOH HOH . F 6 HOH A 55 455 152 HOH HOH . F 6 HOH A 56 456 65 HOH HOH . F 6 HOH A 57 457 41 HOH HOH . F 6 HOH A 58 458 23 HOH HOH . F 6 HOH A 59 459 85 HOH HOH . F 6 HOH A 60 460 247 HOH HOH . F 6 HOH A 61 461 24 HOH HOH . F 6 HOH A 62 462 53 HOH HOH . F 6 HOH A 63 463 161 HOH HOH . F 6 HOH A 64 464 181 HOH HOH . F 6 HOH A 65 465 159 HOH HOH . F 6 HOH A 66 466 7 HOH HOH . F 6 HOH A 67 467 235 HOH HOH . F 6 HOH A 68 468 46 HOH HOH . F 6 HOH A 69 469 62 HOH HOH . F 6 HOH A 70 470 2 HOH HOH . F 6 HOH A 71 471 163 HOH HOH . F 6 HOH A 72 472 192 HOH HOH . F 6 HOH A 73 473 78 HOH HOH . F 6 HOH A 74 474 117 HOH HOH . F 6 HOH A 75 475 13 HOH HOH . F 6 HOH A 76 476 56 HOH HOH . F 6 HOH A 77 477 103 HOH HOH . F 6 HOH A 78 478 36 HOH HOH . F 6 HOH A 79 479 20 HOH HOH . F 6 HOH A 80 480 147 HOH HOH . F 6 HOH A 81 481 33 HOH HOH . F 6 HOH A 82 482 99 HOH HOH . F 6 HOH A 83 483 1 HOH HOH . F 6 HOH A 84 484 73 HOH HOH . F 6 HOH A 85 485 83 HOH HOH . F 6 HOH A 86 486 259 HOH HOH . F 6 HOH A 87 487 69 HOH HOH . F 6 HOH A 88 488 3 HOH HOH . F 6 HOH A 89 489 82 HOH HOH . F 6 HOH A 90 490 9 HOH HOH . F 6 HOH A 91 491 12 HOH HOH . F 6 HOH A 92 492 45 HOH HOH . F 6 HOH A 93 493 93 HOH HOH . F 6 HOH A 94 494 160 HOH HOH . F 6 HOH A 95 495 238 HOH HOH . F 6 HOH A 96 496 57 HOH HOH . F 6 HOH A 97 497 106 HOH HOH . F 6 HOH A 98 498 61 HOH HOH . F 6 HOH A 99 499 35 HOH HOH . F 6 HOH A 100 500 107 HOH HOH . F 6 HOH A 101 501 22 HOH HOH . F 6 HOH A 102 502 16 HOH HOH . F 6 HOH A 103 503 19 HOH HOH . F 6 HOH A 104 504 97 HOH HOH . F 6 HOH A 105 505 109 HOH HOH . F 6 HOH A 106 506 146 HOH HOH . F 6 HOH A 107 507 8 HOH HOH . F 6 HOH A 108 508 43 HOH HOH . F 6 HOH A 109 509 68 HOH HOH . F 6 HOH A 110 510 59 HOH HOH . F 6 HOH A 111 511 105 HOH HOH . F 6 HOH A 112 512 27 HOH HOH . F 6 HOH A 113 513 72 HOH HOH . F 6 HOH A 114 514 44 HOH HOH . F 6 HOH A 115 515 75 HOH HOH . F 6 HOH A 116 516 164 HOH HOH . F 6 HOH A 117 517 47 HOH HOH . F 6 HOH A 118 518 84 HOH HOH . F 6 HOH A 119 519 155 HOH HOH . F 6 HOH A 120 520 169 HOH HOH . F 6 HOH A 121 521 111 HOH HOH . F 6 HOH A 122 522 101 HOH HOH . F 6 HOH A 123 523 237 HOH HOH . F 6 HOH A 124 524 28 HOH HOH . F 6 HOH A 125 525 226 HOH HOH . F 6 HOH A 126 526 231 HOH HOH . F 6 HOH A 127 527 157 HOH HOH . F 6 HOH A 128 528 77 HOH HOH . F 6 HOH A 129 529 119 HOH HOH . F 6 HOH A 130 530 10 HOH HOH . F 6 HOH A 131 531 66 HOH HOH . F 6 HOH A 132 532 252 HOH HOH . F 6 HOH A 133 533 54 HOH HOH . F 6 HOH A 134 534 156 HOH HOH . F 6 HOH A 135 535 94 HOH HOH . F 6 HOH A 136 536 217 HOH HOH . F 6 HOH A 137 537 140 HOH HOH . F 6 HOH A 138 538 81 HOH HOH . F 6 HOH A 139 539 240 HOH HOH . F 6 HOH A 140 540 131 HOH HOH . F 6 HOH A 141 541 139 HOH HOH . F 6 HOH A 142 542 79 HOH HOH . F 6 HOH A 143 543 17 HOH HOH . F 6 HOH A 144 544 31 HOH HOH . F 6 HOH A 145 545 123 HOH HOH . F 6 HOH A 146 546 132 HOH HOH . F 6 HOH A 147 547 48 HOH HOH . F 6 HOH A 148 548 175 HOH HOH . F 6 HOH A 149 549 110 HOH HOH . F 6 HOH A 150 550 18 HOH HOH . F 6 HOH A 151 551 121 HOH HOH . F 6 HOH A 152 552 95 HOH HOH . F 6 HOH A 153 553 87 HOH HOH . F 6 HOH A 154 554 134 HOH HOH . F 6 HOH A 155 555 32 HOH HOH . F 6 HOH A 156 556 126 HOH HOH . F 6 HOH A 157 557 5 HOH HOH . F 6 HOH A 158 558 34 HOH HOH . F 6 HOH A 159 559 51 HOH HOH . F 6 HOH A 160 560 255 HOH HOH . F 6 HOH A 161 561 91 HOH HOH . F 6 HOH A 162 562 11 HOH HOH . F 6 HOH A 163 563 102 HOH HOH . F 6 HOH A 164 564 88 HOH HOH . F 6 HOH A 165 565 210 HOH HOH . F 6 HOH A 166 566 80 HOH HOH . F 6 HOH A 167 567 201 HOH HOH . F 6 HOH A 168 568 37 HOH HOH . F 6 HOH A 169 569 149 HOH HOH . F 6 HOH A 170 570 162 HOH HOH . F 6 HOH A 171 571 128 HOH HOH . F 6 HOH A 172 572 170 HOH HOH . F 6 HOH A 173 573 228 HOH HOH . F 6 HOH A 174 574 30 HOH HOH . F 6 HOH A 175 575 58 HOH HOH . F 6 HOH A 176 576 49 HOH HOH . F 6 HOH A 177 577 138 HOH HOH . F 6 HOH A 178 578 29 HOH HOH . F 6 HOH A 179 579 118 HOH HOH . F 6 HOH A 180 580 100 HOH HOH . F 6 HOH A 181 581 185 HOH HOH . F 6 HOH A 182 582 98 HOH HOH . F 6 HOH A 183 583 245 HOH HOH . F 6 HOH A 184 584 256 HOH HOH . F 6 HOH A 185 585 115 HOH HOH . F 6 HOH A 186 586 136 HOH HOH . F 6 HOH A 187 587 120 HOH HOH . F 6 HOH A 188 588 264 HOH HOH . F 6 HOH A 189 589 265 HOH HOH . F 6 HOH A 190 590 122 HOH HOH . F 6 HOH A 191 591 249 HOH HOH . F 6 HOH A 192 592 203 HOH HOH . F 6 HOH A 193 593 142 HOH HOH . F 6 HOH A 194 594 189 HOH HOH . F 6 HOH A 195 595 260 HOH HOH . F 6 HOH A 196 596 236 HOH HOH . F 6 HOH A 197 597 116 HOH HOH . F 6 HOH A 198 598 200 HOH HOH . F 6 HOH A 199 599 104 HOH HOH . F 6 HOH A 200 600 250 HOH HOH . F 6 HOH A 201 601 14 HOH HOH . F 6 HOH A 202 602 114 HOH HOH . F 6 HOH A 203 603 221 HOH HOH . F 6 HOH A 204 604 244 HOH HOH . F 6 HOH A 205 605 74 HOH HOH . F 6 HOH A 206 606 212 HOH HOH . F 6 HOH A 207 607 42 HOH HOH . F 6 HOH A 208 608 261 HOH HOH . F 6 HOH A 209 609 55 HOH HOH . F 6 HOH A 210 610 248 HOH HOH . F 6 HOH A 211 611 229 HOH HOH . F 6 HOH A 212 612 227 HOH HOH . F 6 HOH A 213 613 151 HOH HOH . F 6 HOH A 214 614 137 HOH HOH . F 6 HOH A 215 615 52 HOH HOH . F 6 HOH A 216 616 218 HOH HOH . F 6 HOH A 217 617 179 HOH HOH . F 6 HOH A 218 618 232 HOH HOH . F 6 HOH A 219 619 258 HOH HOH . F 6 HOH A 220 620 127 HOH HOH . F 6 HOH A 221 621 254 HOH HOH . F 6 HOH A 222 622 173 HOH HOH . F 6 HOH A 223 623 165 HOH HOH . F 6 HOH A 224 624 224 HOH HOH . F 6 HOH A 225 625 89 HOH HOH . F 6 HOH A 226 626 108 HOH HOH . F 6 HOH A 227 627 143 HOH HOH . F 6 HOH A 228 628 158 HOH HOH . F 6 HOH A 229 629 130 HOH HOH . F 6 HOH A 230 630 133 HOH HOH . F 6 HOH A 231 631 197 HOH HOH . F 6 HOH A 232 632 167 HOH HOH . F 6 HOH A 233 633 178 HOH HOH . F 6 HOH A 234 634 207 HOH HOH . F 6 HOH A 235 635 198 HOH HOH . F 6 HOH A 236 636 223 HOH HOH . F 6 HOH A 237 637 214 HOH HOH . F 6 HOH A 238 638 168 HOH HOH . F 6 HOH A 239 639 194 HOH HOH . F 6 HOH A 240 640 195 HOH HOH . F 6 HOH A 241 641 239 HOH HOH . F 6 HOH A 242 642 253 HOH HOH . F 6 HOH A 243 643 257 HOH HOH . F 6 HOH A 244 644 129 HOH HOH . F 6 HOH A 245 645 90 HOH HOH . F 6 HOH A 246 646 187 HOH HOH . F 6 HOH A 247 647 144 HOH HOH . F 6 HOH A 248 648 38 HOH HOH . F 6 HOH A 249 649 219 HOH HOH . F 6 HOH A 250 650 262 HOH HOH . F 6 HOH A 251 651 246 HOH HOH . F 6 HOH A 252 652 266 HOH HOH . F 6 HOH A 253 653 213 HOH HOH . F 6 HOH A 254 654 196 HOH HOH . F 6 HOH A 255 655 171 HOH HOH . F 6 HOH A 256 656 205 HOH HOH . F 6 HOH A 257 657 242 HOH HOH . F 6 HOH A 258 658 225 HOH HOH . F 6 HOH A 259 659 193 HOH HOH . F 6 HOH A 260 660 208 HOH HOH . F 6 HOH A 261 661 263 HOH HOH . F 6 HOH A 262 662 209 HOH HOH . F 6 HOH A 263 663 215 HOH HOH . F 6 HOH A 264 664 204 HOH HOH . F 6 HOH A 265 665 206 HOH HOH . F 6 HOH A 266 666 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 1.358 -11.755 14.978 1 19.73 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 2.423 -10.788 14.405 1 31.85 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 1.848 -13.348 14.552 1 20.27 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 1.598 -11.712 16.676 1 17.39 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #