data_8RKQ # _model_server_result.job_id C5RI9AhE9vXADCjy2YYCaw _model_server_result.datetime_utc '2024-11-08 21:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rkq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 8RKQ # _exptl.entry_id 8RKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 726.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,5S,9S,16R,20R,24S,28S,35R)-3,22-Bis(dihydroxyphosphoryloxy)tridecacyclo[22.14.1.15,20.19,16.128,35.02,23.04,21.06,19.08,17.010,15.025,38.027,36.029,34]dotetraconta-2(23),3,6,8(17),10,12,14,18,21,25,27(36),29,31,33,37-pentadecaene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RKQ _cell.length_a 148.752 _cell.length_b 148.752 _cell.length_c 189.957 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C42 H32 O8 P2' _chem_comp.formula_weight 726.646 _chem_comp.id 9SZ _chem_comp.mon_nstd_flag . _chem_comp.name (1R,5S,9S,16R,20R,24S,28S,35R)-3,22-Bis(dihydroxyphosphoryloxy)tridecacyclo[22.14.1.15,20.19,16.128,35.02,23.04,21.06,19.08,17.010,15.025,38.027,36.029,34]dotetraconta-2(23),3,6,8(17),10,12,14,18,21,25,27(36),29,31,33,37-pentadecaene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD PAB 9SZ doub 1 n n PAB OAC 9SZ sing 2 n n PAB OAA 9SZ sing 3 n n PAB OAE 9SZ sing 4 n n CAX CAW 9SZ doub 5 n y CAX CAY 9SZ sing 6 n y CAZ CBA 9SZ sing 7 n n CAZ CAW 9SZ sing 8 n n CAZ CBH 9SZ sing 9 n n CBA CBB 9SZ sing 10 n n CAQ CAY 9SZ sing 11 n n CAQ CAR 9SZ sing 12 n n CAQ CAP 9SZ sing 13 n n CAW CAV 9SZ sing 14 n y CAY CAT 9SZ doub 15 n y CAR CAS 9SZ sing 16 n n OAE CAF 9SZ sing 17 n n CBH CBG 9SZ doub 18 n y CBH CBC 9SZ sing 19 n y CBG CBF 9SZ sing 20 n y CAV CBB 9SZ sing 21 n n CAV CAU 9SZ doub 22 n y CAP CAF 9SZ doub 23 n y CAP CAO 9SZ sing 24 n y CAT CAS 9SZ sing 25 n n CAT CAU 9SZ sing 26 n y CBB CBC 9SZ sing 27 n n CAF CAG 9SZ sing 28 n y CAS CAO 9SZ sing 29 n n CBC CBD 9SZ doub 30 n y CAO CAI 9SZ doub 31 n y CBF CBE 9SZ doub 32 n y CAG CBK 9SZ sing 33 n n CAG CAH 9SZ doub 34 n y CBD CBE 9SZ sing 35 n y CBK CBL 9SZ sing 36 n n CBK CBJ 9SZ sing 37 n n CAI CAH 9SZ sing 38 n y CAI OAJ 9SZ sing 39 n n CAH CBI 9SZ sing 40 n n CBM CBL 9SZ doub 41 n y CBM CBN 9SZ sing 42 n y CBL CBQ 9SZ sing 43 n y CBJ CBI 9SZ sing 44 n n CBV CBW 9SZ doub 45 n y CBV CBU 9SZ sing 46 n y OAJ PAK 9SZ sing 47 n n CBW CBX 9SZ sing 48 n y CBI CBQ 9SZ sing 49 n n CBN CBT 9SZ sing 50 n n CBN CBO 9SZ doub 51 n y CBQ CBP 9SZ doub 52 n y CBU CBT 9SZ sing 53 n n CBU CBZ 9SZ doub 54 n y CBT CBS 9SZ sing 55 n n CBX CBY 9SZ doub 56 n y OAL PAK 9SZ doub 57 n n PAK OAM 9SZ sing 58 n n PAK OAN 9SZ sing 59 n n CBO CBP 9SZ sing 60 n y CBO CBR 9SZ sing 61 n n CBZ CBY 9SZ sing 62 n y CBZ CBR 9SZ sing 63 n n CBS CBR 9SZ sing 64 n n OAC H1 9SZ sing 65 n n OAA H2 9SZ sing 66 n n CBK H3 9SZ sing 67 n n CBJ H4 9SZ sing 68 n n CBJ H5 9SZ sing 69 n n CBM H6 9SZ sing 70 n n CBT H7 9SZ sing 71 n n CBS H8 9SZ sing 72 n n CBS H9 9SZ sing 73 n n CBV H10 9SZ sing 74 n n CBW H11 9SZ sing 75 n n CBX H12 9SZ sing 76 n n CBY H13 9SZ sing 77 n n CBR H14 9SZ sing 78 n n CBP H15 9SZ sing 79 n n CBI H16 9SZ sing 80 n n OAM H17 9SZ sing 81 n n OAN H18 9SZ sing 82 n n CAQ H19 9SZ sing 83 n n CAR H20 9SZ sing 84 n n CAR H21 9SZ sing 85 n n CAS H22 9SZ sing 86 n n CAX H23 9SZ sing 87 n n CAZ H24 9SZ sing 88 n n CBA H25 9SZ sing 89 n n CBA H26 9SZ sing 90 n n CBG H27 9SZ sing 91 n n CBF H28 9SZ sing 92 n n CBE H29 9SZ sing 93 n n CBD H30 9SZ sing 94 n n CBB H31 9SZ sing 95 n n CAU H32 9SZ sing 96 n n # _atom_sites.entry_id 8RKQ _atom_sites.fract_transf_matrix[1][1] 0.006723 _atom_sites.fract_transf_matrix[1][2] 0.003881 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 9SZ A 1 601 601 9SZ 9SZ . F 3 HOH A 1 701 54 HOH HOH . F 3 HOH A 2 702 37 HOH HOH . F 3 HOH A 3 703 55 HOH HOH . F 3 HOH A 4 704 6 HOH HOH . F 3 HOH A 5 705 23 HOH HOH . F 3 HOH A 6 706 35 HOH HOH . F 3 HOH A 7 707 19 HOH HOH . F 3 HOH A 8 708 16 HOH HOH . F 3 HOH A 9 709 20 HOH HOH . F 3 HOH A 10 710 2 HOH HOH . F 3 HOH A 11 711 7 HOH HOH . F 3 HOH A 12 712 9 HOH HOH . F 3 HOH A 13 713 1 HOH HOH . F 3 HOH A 14 714 39 HOH HOH . F 3 HOH A 15 715 42 HOH HOH . F 3 HOH A 16 716 15 HOH HOH . F 3 HOH A 17 717 5 HOH HOH . F 3 HOH A 18 718 11 HOH HOH . F 3 HOH A 19 719 44 HOH HOH . F 3 HOH A 20 720 50 HOH HOH . F 3 HOH A 21 721 34 HOH HOH . F 3 HOH A 22 722 28 HOH HOH . F 3 HOH A 23 723 25 HOH HOH . F 3 HOH A 24 724 30 HOH HOH . G 3 HOH B 1 601 18 HOH HOH . G 3 HOH B 2 602 14 HOH HOH . G 3 HOH B 3 603 17 HOH HOH . G 3 HOH B 4 604 26 HOH HOH . G 3 HOH B 5 605 27 HOH HOH . G 3 HOH B 6 606 12 HOH HOH . G 3 HOH B 7 607 48 HOH HOH . G 3 HOH B 8 608 3 HOH HOH . G 3 HOH B 9 609 38 HOH HOH . G 3 HOH B 10 610 13 HOH HOH . G 3 HOH B 11 611 24 HOH HOH . G 3 HOH B 12 612 4 HOH HOH . G 3 HOH B 13 613 31 HOH HOH . G 3 HOH B 14 614 40 HOH HOH . G 3 HOH B 15 615 32 HOH HOH . G 3 HOH B 16 616 21 HOH HOH . G 3 HOH B 17 617 45 HOH HOH . G 3 HOH B 18 618 51 HOH HOH . G 3 HOH B 19 619 49 HOH HOH . G 3 HOH B 20 620 33 HOH HOH . G 3 HOH B 21 621 47 HOH HOH . H 3 HOH C 1 601 8 HOH HOH . H 3 HOH C 2 602 10 HOH HOH . H 3 HOH C 3 603 56 HOH HOH . I 3 HOH D 1 601 41 HOH HOH . I 3 HOH D 2 602 36 HOH HOH . I 3 HOH D 3 603 29 HOH HOH . I 3 HOH D 4 604 53 HOH HOH . I 3 HOH D 5 605 52 HOH HOH . I 3 HOH D 6 606 43 HOH HOH . I 3 HOH D 7 607 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 9SZ . . . E 2 -23.678 -74.497 -46.642 1 93.07 ? OAC 9SZ 601 A 1 HETATM 2 P PAB 9SZ . . . E 2 -22.847 -74.065 -47.961 1 93.98 ? PAB 9SZ 601 A 1 HETATM 3 O OAD 9SZ . . . E 2 -21.327 -74.531 -47.667 1 93.8 ? OAD 9SZ 601 A 1 HETATM 4 O OAA 9SZ . . . E 2 -23.4 -74.698 -49.184 1 91.46 ? OAA 9SZ 601 A 1 HETATM 5 O OAE 9SZ . . . E 2 -22.794 -72.447 -47.981 1 97.43 ? OAE 9SZ 601 A 1 HETATM 6 C CAF 9SZ . . . E 2 -23.785 -71.691 -48.532 1 101.19 ? CAF 9SZ 601 A 1 HETATM 7 C CAG 9SZ . . . E 2 -24.669 -71.094 -47.734 1 102.65 ? CAG 9SZ 601 A 1 HETATM 8 C CBK 9SZ . . . E 2 -24.839 -71.026 -46.368 1 103.02 ? CBK 9SZ 601 A 1 HETATM 9 C CBJ 9SZ . . . E 2 -26.323 -71.022 -46.266 1 103.21 ? CBJ 9SZ 601 A 1 HETATM 10 C CBL 9SZ . . . E 2 -24.557 -69.706 -45.999 1 103.73 ? CBL 9SZ 601 A 1 HETATM 11 C CBM 9SZ . . . E 2 -23.563 -69.139 -45.328 1 104.65 ? CBM 9SZ 601 A 1 HETATM 12 C CBN 9SZ . . . E 2 -23.593 -67.822 -45.146 1 106.53 ? CBN 9SZ 601 A 1 HETATM 13 C CBT 9SZ . . . E 2 -22.733 -66.944 -44.537 1 107.74 ? CBT 9SZ 601 A 1 HETATM 14 C CBS 9SZ . . . E 2 -23.683 -65.986 -43.912 1 107.47 ? CBS 9SZ 601 A 1 HETATM 15 C CBU 9SZ . . . E 2 -22.184 -66.128 -45.549 1 109.36 ? CBU 9SZ 601 A 1 HETATM 16 C CBV 9SZ . . . E 2 -20.975 -66.033 -46.091 1 110.06 ? CBV 9SZ 601 A 1 HETATM 17 C CBW 9SZ . . . E 2 -20.696 -65.107 -47.087 1 110.24 ? CBW 9SZ 601 A 1 HETATM 18 C CBX 9SZ . . . E 2 -21.728 -64.293 -47.523 1 110.56 ? CBX 9SZ 601 A 1 HETATM 19 C CBY 9SZ . . . E 2 -22.986 -64.431 -46.941 1 110.2 ? CBY 9SZ 601 A 1 HETATM 20 C CBZ 9SZ . . . E 2 -23.175 -65.333 -45.978 1 109.37 ? CBZ 9SZ 601 A 1 HETATM 21 C CBR 9SZ . . . E 2 -24.278 -65.728 -45.244 1 108.11 ? CBR 9SZ 601 A 1 HETATM 22 C CBO 9SZ . . . E 2 -24.585 -67.053 -45.63 1 106.78 ? CBO 9SZ 601 A 1 HETATM 23 C CBP 9SZ . . . E 2 -25.577 -67.626 -46.314 1 105.57 ? CBP 9SZ 601 A 1 HETATM 24 C CBQ 9SZ . . . E 2 -25.56 -68.952 -46.488 1 104.46 ? CBQ 9SZ 601 A 1 HETATM 25 C CBI 9SZ . . . E 2 -26.392 -69.848 -47.151 1 103.74 ? CBI 9SZ 601 A 1 HETATM 26 C CAH 9SZ . . . E 2 -25.657 -70.335 -48.254 1 103.36 ? CAH 9SZ 601 A 1 HETATM 27 C CAI 9SZ . . . E 2 -25.72 -70.205 -49.583 1 103.06 ? CAI 9SZ 601 A 1 HETATM 28 O OAJ 9SZ . . . E 2 -26.714 -69.438 -50.129 1 102.07 ? OAJ 9SZ 601 A 1 HETATM 29 P PAK 9SZ . . . E 2 -28.148 -70.026 -50.564 1 99 ? PAK 9SZ 601 A 1 HETATM 30 O OAM 9SZ . . . E 2 -27.804 -71.314 -51.211 1 98.14 ? OAM 9SZ 601 A 1 HETATM 31 O OAN 9SZ . . . E 2 -28.892 -70.183 -49.309 1 99.15 ? OAN 9SZ 601 A 1 HETATM 32 O OAL 9SZ . . . E 2 -28.645 -69.001 -51.49 1 98.02 ? OAL 9SZ 601 A 1 HETATM 33 C CAO 9SZ . . . E 2 -24.828 -70.81 -50.386 1 102.64 ? CAO 9SZ 601 A 1 HETATM 34 C CAP 9SZ . . . E 2 -23.852 -71.562 -49.855 1 102 ? CAP 9SZ 601 A 1 HETATM 35 C CAQ 9SZ . . . E 2 -23.108 -72.045 -50.938 1 102.03 ? CAQ 9SZ 601 A 1 HETATM 36 C CAR 9SZ . . . E 2 -24.178 -72.326 -51.936 1 101.61 ? CAR 9SZ 601 A 1 HETATM 37 C CAS 9SZ . . . E 2 -24.602 -70.882 -51.762 1 102.34 ? CAS 9SZ 601 A 1 HETATM 38 C CAT 9SZ . . . E 2 -23.397 -70.219 -52.072 1 101.64 ? CAT 9SZ 601 A 1 HETATM 39 C CAY 9SZ . . . E 2 -22.436 -70.987 -51.536 1 101.95 ? CAY 9SZ 601 A 1 HETATM 40 C CAX 9SZ . . . E 2 -21.149 -70.659 -51.639 1 100.96 ? CAX 9SZ 601 A 1 HETATM 41 C CAW 9SZ . . . E 2 -20.822 -69.545 -52.291 1 101.15 ? CAW 9SZ 601 A 1 HETATM 42 C CAZ 9SZ . . . E 2 -19.607 -68.925 -52.581 1 101.16 ? CAZ 9SZ 601 A 1 HETATM 43 C CBA 9SZ . . . E 2 -19.898 -68.43 -53.959 1 101.19 ? CBA 9SZ 601 A 1 HETATM 44 C CBH 9SZ . . . E 2 -19.516 -67.711 -51.897 1 100.97 ? CBH 9SZ 601 A 1 HETATM 45 C CBG 9SZ . . . E 2 -18.727 -67.285 -50.906 1 99.86 ? CBG 9SZ 601 A 1 HETATM 46 C CBF 9SZ . . . E 2 -18.87 -65.989 -50.418 1 99.45 ? CBF 9SZ 601 A 1 HETATM 47 C CBE 9SZ . . . E 2 -19.841 -65.167 -50.982 1 99.03 ? CBE 9SZ 601 A 1 HETATM 48 C CBD 9SZ . . . E 2 -20.638 -65.663 -52.014 1 99.76 ? CBD 9SZ 601 A 1 HETATM 49 C CBC 9SZ . . . E 2 -20.459 -66.916 -52.444 1 100.88 ? CBC 9SZ 601 A 1 HETATM 50 C CBB 9SZ . . . E 2 -21.08 -67.697 -53.433 1 101.07 ? CBB 9SZ 601 A 1 HETATM 51 C CAV 9SZ . . . E 2 -21.775 -68.763 -52.835 1 100.89 ? CAV 9SZ 601 A 1 HETATM 52 C CAU 9SZ . . . E 2 -23.067 -69.099 -52.727 1 100.34 ? CAU 9SZ 601 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 52 #