data_8RMI # _model_server_result.job_id EpHAdEFpUNqSyiHnI8pw0Q _model_server_result.datetime_utc '2024-11-21 08:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 8RMI # _exptl.entry_id 8RMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RMI _cell.length_a 93.515 _cell.length_b 93.515 _cell.length_c 177.817 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 798 A CYS 798 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc1 D N01 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 D N03 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 D N05 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc4 D O03 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 D O05 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc6 D O08 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc7 D O09 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 332 n n C1 C2 GOL sing 333 n n C1 H11 GOL sing 334 n n C1 H12 GOL sing 335 n n O1 HO1 GOL sing 336 n n C2 O2 GOL sing 337 n n C2 C3 GOL sing 338 n n C2 H2 GOL sing 339 n n O2 HO2 GOL sing 340 n n C3 O3 GOL sing 341 n n C3 H31 GOL sing 342 n n C3 H32 GOL sing 343 n n O3 HO3 GOL sing 344 n n # _atom_sites.entry_id 8RMI _atom_sites.fract_transf_matrix[1][1] 0.010693 _atom_sites.fract_transf_matrix[1][2] 0.006174 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 901 904 BOG BOG . C 2 BOG A 1 902 905 BOG BOG . D 3 A1H1Z A 1 903 901 A1H1Z LIG . E 4 GOL A 1 904 902 GOL GOL . F 5 NH4 A 1 905 903 NH4 NH4 . G 6 FE A 1 906 1 FE FE . H 7 SO4 A 1 907 1 SO4 SO4 . I 7 SO4 A 1 908 2 SO4 SO4 . J 7 SO4 A 1 909 3 SO4 SO4 . K 7 SO4 A 1 910 4 SO4 SO4 . L 7 SO4 A 1 911 5 SO4 SO4 . M 7 SO4 A 1 912 6 SO4 SO4 . N 8 NA A 1 913 1 NA NA . O 9 HOH A 1 1001 20 HOH HOH . O 9 HOH A 2 1002 7 HOH HOH . O 9 HOH A 3 1003 8 HOH HOH . O 9 HOH A 4 1004 19 HOH HOH . O 9 HOH A 5 1005 39 HOH HOH . O 9 HOH A 6 1006 10 HOH HOH . O 9 HOH A 7 1007 17 HOH HOH . O 9 HOH A 8 1008 34 HOH HOH . O 9 HOH A 9 1009 24 HOH HOH . O 9 HOH A 10 1010 16 HOH HOH . O 9 HOH A 11 1011 35 HOH HOH . O 9 HOH A 12 1012 30 HOH HOH . O 9 HOH A 13 1013 2 HOH HOH . O 9 HOH A 14 1014 25 HOH HOH . O 9 HOH A 15 1015 4 HOH HOH . O 9 HOH A 16 1016 31 HOH HOH . O 9 HOH A 17 1017 14 HOH HOH . O 9 HOH A 18 1018 22 HOH HOH . O 9 HOH A 19 1019 11 HOH HOH . O 9 HOH A 20 1020 18 HOH HOH . O 9 HOH A 21 1021 5 HOH HOH . O 9 HOH A 22 1022 29 HOH HOH . O 9 HOH A 23 1023 32 HOH HOH . O 9 HOH A 24 1024 37 HOH HOH . O 9 HOH A 25 1025 15 HOH HOH . O 9 HOH A 26 1026 28 HOH HOH . O 9 HOH A 27 1027 3 HOH HOH . O 9 HOH A 28 1028 27 HOH HOH . O 9 HOH A 29 1029 26 HOH HOH . O 9 HOH A 30 1030 13 HOH HOH . O 9 HOH A 31 1031 23 HOH HOH . O 9 HOH A 32 1032 33 HOH HOH . O 9 HOH A 33 1033 12 HOH HOH . O 9 HOH A 34 1034 38 HOH HOH . O 9 HOH A 35 1035 40 HOH HOH . O 9 HOH A 36 1036 6 HOH HOH . O 9 HOH A 37 1037 9 HOH HOH . O 9 HOH A 38 1038 21 HOH HOH . O 9 HOH A 39 1039 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 5.154 -47.227 4.667 1 91.76 ? C1 GOL 904 A 1 HETATM 2 O O1 GOL . . . E 4 3.843 -47.72 4.398 1 87.52 ? O1 GOL 904 A 1 HETATM 3 C C2 GOL . . . E 4 6.227 -48.043 3.965 1 89.53 ? C2 GOL 904 A 1 HETATM 4 O O2 GOL . . . E 4 6.547 -47.442 2.709 1 76.63 ? O2 GOL 904 A 1 HETATM 5 C C3 GOL . . . E 4 7.482 -48.267 4.804 1 88.35 ? C3 GOL 904 A 1 HETATM 6 O O3 GOL . . . E 4 7.992 -47.077 5.407 1 80.75 ? O3 GOL 904 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #