data_8RMI
#
_model_server_result.job_id            fWwhLku5d7wEwdOONmWEQQ 
_model_server_result.datetime_utc      '2024-11-21 08:39:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rmi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":913}' 
#
_entry.id    8RMI 
#
_exptl.entry_id    8RMI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8RMI 
_cell.length_a            93.515 
_cell.length_b            93.515 
_cell.length_c            177.817 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 798 A CYS 798 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc1 D N01 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc2 D N03 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc3 D N05 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc4 D O03 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc5 D O05 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc6 D O08 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? 
metalc ? metalc7 D O09 A1H1Z . A A1H1Z 903 1_555 G FE FE . A FE 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8RMI 
_atom_sites.fract_transf_matrix[1][1]    0.010693 
_atom_sites.fract_transf_matrix[1][2]    0.006174 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012348 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 901 904 BOG BOG . 
C 2 BOG A 1 902 905 BOG BOG . 
D 3 A1H1Z A 1 903 901 A1H1Z LIG . 
E 4 GOL A 1 904 902 GOL GOL . 
F 5 NH4 A 1 905 903 NH4 NH4 . 
G 6 FE A 1 906 1 FE FE . 
H 7 SO4 A 1 907 1 SO4 SO4 . 
I 7 SO4 A 1 908 2 SO4 SO4 . 
J 7 SO4 A 1 909 3 SO4 SO4 . 
K 7 SO4 A 1 910 4 SO4 SO4 . 
L 7 SO4 A 1 911 5 SO4 SO4 . 
M 7 SO4 A 1 912 6 SO4 SO4 . 
N 8 NA A 1 913 1 NA NA . 
O 9 HOH A 1 1001 20 HOH HOH . 
O 9 HOH A 2 1002 7 HOH HOH . 
O 9 HOH A 3 1003 8 HOH HOH . 
O 9 HOH A 4 1004 19 HOH HOH . 
O 9 HOH A 5 1005 39 HOH HOH . 
O 9 HOH A 6 1006 10 HOH HOH . 
O 9 HOH A 7 1007 17 HOH HOH . 
O 9 HOH A 8 1008 34 HOH HOH . 
O 9 HOH A 9 1009 24 HOH HOH . 
O 9 HOH A 10 1010 16 HOH HOH . 
O 9 HOH A 11 1011 35 HOH HOH . 
O 9 HOH A 12 1012 30 HOH HOH . 
O 9 HOH A 13 1013 2 HOH HOH . 
O 9 HOH A 14 1014 25 HOH HOH . 
O 9 HOH A 15 1015 4 HOH HOH . 
O 9 HOH A 16 1016 31 HOH HOH . 
O 9 HOH A 17 1017 14 HOH HOH . 
O 9 HOH A 18 1018 22 HOH HOH . 
O 9 HOH A 19 1019 11 HOH HOH . 
O 9 HOH A 20 1020 18 HOH HOH . 
O 9 HOH A 21 1021 5 HOH HOH . 
O 9 HOH A 22 1022 29 HOH HOH . 
O 9 HOH A 23 1023 32 HOH HOH . 
O 9 HOH A 24 1024 37 HOH HOH . 
O 9 HOH A 25 1025 15 HOH HOH . 
O 9 HOH A 26 1026 28 HOH HOH . 
O 9 HOH A 27 1027 3 HOH HOH . 
O 9 HOH A 28 1028 27 HOH HOH . 
O 9 HOH A 29 1029 26 HOH HOH . 
O 9 HOH A 30 1030 13 HOH HOH . 
O 9 HOH A 31 1031 23 HOH HOH . 
O 9 HOH A 32 1032 33 HOH HOH . 
O 9 HOH A 33 1033 12 HOH HOH . 
O 9 HOH A 34 1034 38 HOH HOH . 
O 9 HOH A 35 1035 40 HOH HOH . 
O 9 HOH A 36 1036 6 HOH HOH . 
O 9 HOH A 37 1037 9 HOH HOH . 
O 9 HOH A 38 1038 21 HOH HOH . 
O 9 HOH A 39 1039 36 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         N 
_atom_site.label_entity_id       8 
_atom_site.Cartn_x               8.906 
_atom_site.Cartn_y               -21.534 
_atom_site.Cartn_z               37.657 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           913 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#