data_8RMK # _model_server_result.job_id UzxvYCYPgC995uKqx6douw _model_server_result.datetime_utc '2024-11-23 16:07:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":401}' # _entry.id 8RMK # _exptl.entry_id 8RMK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RMK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 46 1_555 A SG CYS 131 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 49 A CYS 48 1_555 A SG CYS 163 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 25 L CYS 22 1_555 B SG CYS 99 L CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 47 B CYS 46 1_555 C SG CYS 131 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 49 B CYS 48 1_555 C SG CYS 163 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 D SG CYS 47 C CYS 46 1_555 D SG CYS 131 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 D SG CYS 49 C CYS 48 1_555 D SG CYS 163 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 E SG CYS 47 D CYS 46 1_555 E SG CYS 131 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 E SG CYS 49 D CYS 48 1_555 E SG CYS 163 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 F SG CYS 47 E CYS 46 1_555 F SG CYS 131 E CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 49 E CYS 48 1_555 F SG CYS 163 E CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 G SG CYS 47 F CYS 46 1_555 G SG CYS 131 F CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 G SG CYS 49 F CYS 48 1_555 G SG CYS 163 F CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 H SG CYS 47 G CYS 46 1_555 H SG CYS 131 G CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 H SG CYS 49 G CYS 48 1_555 H SG CYS 163 G CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf16 I SG CYS 47 H CYS 46 1_555 I SG CYS 131 H CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 I SG CYS 49 H CYS 48 1_555 I SG CYS 163 H CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf18 J SG CYS 47 I CYS 46 1_555 J SG CYS 131 I CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 J SG CYS 49 I CYS 48 1_555 J SG CYS 163 I CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf20 K SG CYS 47 J CYS 46 1_555 K SG CYS 131 J CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 K SG CYS 49 J CYS 48 1_555 K SG CYS 163 J CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf22 L SG CYS 47 K CYS 46 1_555 L SG CYS 131 K CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 L SG CYS 49 K CYS 48 1_555 L SG CYS 163 K CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf24 M SG CYS 25 M CYS 22 1_555 M SG CYS 99 M CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf25 N SG CYS 25 N CYS 22 1_555 N SG CYS 99 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 O SG CYS 25 O CYS 22 1_555 O SG CYS 99 O CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 P SG CYS 25 P CYS 22 1_555 P SG CYS 99 P CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf28 Q SG CYS 25 Q CYS 22 1_555 Q SG CYS 99 Q CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf29 R SG CYS 25 R CYS 22 1_555 R SG CYS 99 R CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf30 S SG CYS 25 S CYS 22 1_555 S SG CYS 99 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf31 T SG CYS 25 T CYS 22 1_555 T SG CYS 99 T CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf32 U SG CYS 25 U CYS 22 1_555 U SG CYS 99 U CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf33 V SG CYS 25 V CYS 22 1_555 V SG CYS 99 V CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 258 n n C1 O3P PLC sing 259 n n C1 H11 PLC sing 260 n n C1 H12 PLC sing 261 n n C2 C3 PLC sing 262 n n C2 O2 PLC sing 263 n n C2 H2 PLC sing 264 n n C3 O3 PLC sing 265 n n C3 H31 PLC sing 266 n n C3 H32 PLC sing 267 n n C4 C5 PLC sing 268 n n C4 O4P PLC sing 269 n n C4 H41 PLC sing 270 n n C4 H42 PLC sing 271 n n C5 N PLC sing 272 n n C5 H51 PLC sing 273 n n C5 H52 PLC sing 274 n n C6 N PLC sing 275 n n C6 H61 PLC sing 276 n n C6 H62 PLC sing 277 n n C6 H63 PLC sing 278 n n C7 N PLC sing 279 n n C7 H71 PLC sing 280 n n C7 H72 PLC sing 281 n n C7 H73 PLC sing 282 n n C8 N PLC sing 283 n n C8 H81 PLC sing 284 n n C8 H82 PLC sing 285 n n C8 H83 PLC sing 286 n n C' C1' PLC sing 287 n n C' O' PLC doub 288 n n C' O2 PLC sing 289 n n C1' C2' PLC sing 290 n n C1' "H1'1" PLC sing 291 n n C1' "H1'2" PLC sing 292 n n C2' C3' PLC sing 293 n n C2' "H2'1" PLC sing 294 n n C2' "H2'2" PLC sing 295 n n C3' C4' PLC sing 296 n n C3' "H3'1" PLC sing 297 n n C3' "H3'2" PLC sing 298 n n C4' C5' PLC sing 299 n n C4' "H4'1" PLC sing 300 n n C4' "H4'2" PLC sing 301 n n C5' C6' PLC sing 302 n n C5' "H5'1" PLC sing 303 n n C5' "H5'2" PLC sing 304 n n C6' C7' PLC sing 305 n n C6' "H6'1" PLC sing 306 n n C6' "H6'2" PLC sing 307 n n C7' C8' PLC sing 308 n n C7' "H7'1" PLC sing 309 n n C7' "H7'2" PLC sing 310 n n C8' C9' PLC sing 311 n n C8' "H8'1" PLC sing 312 n n C8' "H8'2" PLC sing 313 n n C9' CA' PLC sing 314 n n C9' "H9'1" PLC sing 315 n n C9' "H9'2" PLC sing 316 n n CA' CB' PLC sing 317 n n CA' "HT'1" PLC sing 318 n n CA' "HT'2" PLC sing 319 n n CB' "HE'1" PLC sing 320 n n CB' "HE'2" PLC sing 321 n n CB' "HE'3" PLC sing 322 n n CB C1B PLC sing 323 n n CB OB PLC doub 324 n n CB O3 PLC sing 325 n n C1B C2B PLC sing 326 n n C1B H1A1 PLC sing 327 n n C1B H1A2 PLC sing 328 n n C2B C3B PLC sing 329 n n C2B H2A1 PLC sing 330 n n C2B H2A2 PLC sing 331 n n C3B C4B PLC sing 332 n n C3B H3A1 PLC sing 333 n n C3B H3A2 PLC sing 334 n n C4B C5B PLC sing 335 n n C4B H4A1 PLC sing 336 n n C4B H4A2 PLC sing 337 n n C5B C6B PLC sing 338 n n C5B H5A1 PLC sing 339 n n C5B H5A2 PLC sing 340 n n C6B C7B PLC sing 341 n n C6B H6A1 PLC sing 342 n n C6B H6A2 PLC sing 343 n n C7B C8B PLC sing 344 n n C7B H7A1 PLC sing 345 n n C7B H7A2 PLC sing 346 n n C8B C9B PLC sing 347 n n C8B H8A1 PLC sing 348 n n C8B H8A2 PLC sing 349 n n C9B CAA PLC sing 350 n n C9B H9A1 PLC sing 351 n n C9B H9A2 PLC sing 352 n n CAA CBA PLC sing 353 n n CAA HTA1 PLC sing 354 n n CAA HTA2 PLC sing 355 n n CBA HEA1 PLC sing 356 n n CBA HEA2 PLC sing 357 n n CBA HEA3 PLC sing 358 n n O1P P PLC doub 359 n n O2P P PLC sing 360 n n O2P HOP2 PLC sing 361 n n O3P P PLC sing 362 n n O4P P PLC sing 363 n n # _atom_sites.entry_id 8RMK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 3 PLC A 1 401 401 PLC PLC . X 3 PLC B 1 401 401 PLC PLC . Y 3 PLC C 1 401 401 PLC PLC . Z 3 PLC D 1 401 401 PLC PLC . AA 3 PLC E 1 401 401 PLC PLC . BA 3 PLC F 1 401 401 PLC PLC . CA 3 PLC G 1 401 401 PLC PLC . DA 3 PLC H 1 401 401 PLC PLC . EA 3 PLC I 1 401 401 PLC PLC . FA 3 PLC J 1 401 401 PLC PLC . GA 3 PLC K 1 401 401 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . DA 3 161.82 115.047 147.612 1 58.25 ? C1 PLC 401 H 1 HETATM 2 C C2 PLC . . . DA 3 161.056 116.132 146.877 1 59.7 ? C2 PLC 401 H 1 HETATM 3 C C3 PLC . . . DA 3 161.215 117.526 147.443 1 58.58 ? C3 PLC 401 H 1 HETATM 4 C C4 PLC . . . DA 3 160.903 113.046 150.559 1 60.67 ? C4 PLC 401 H 1 HETATM 5 C C5 PLC . . . DA 3 160.602 114.457 151.012 1 59.93 ? C5 PLC 401 H 1 HETATM 6 C C6 PLC . . . DA 3 160.841 116.185 152.763 1 58.75 ? C6 PLC 401 H 1 HETATM 7 C C7 PLC . . . DA 3 162.665 115.697 151.252 1 60.46 ? C7 PLC 401 H 1 HETATM 8 C C8 PLC . . . DA 3 162.085 114.11 152.979 1 58.18 ? C8 PLC 401 H 1 HETATM 9 C C' PLC . . . DA 3 160.844 115.35 144.624 1 60.78 ? C' PLC 401 H 1 HETATM 10 C C1' PLC . . . DA 3 160.789 115.948 143.248 1 58.55 ? C1' PLC 401 H 1 HETATM 11 C C2' PLC . . . DA 3 161.767 117.089 143.026 1 57.23 ? C2' PLC 401 H 1 HETATM 12 C C3' PLC . . . DA 3 161.631 117.671 141.627 1 58.89 ? C3' PLC 401 H 1 HETATM 13 C C4' PLC . . . DA 3 162.873 117.467 140.769 1 57.05 ? C4' PLC 401 H 1 HETATM 14 C C5' PLC . . . DA 3 163.229 116.002 140.56 1 55.52 ? C5' PLC 401 H 1 HETATM 15 C C6' PLC . . . DA 3 162.149 115.212 139.833 1 56.04 ? C6' PLC 401 H 1 HETATM 16 C C7' PLC . . . DA 3 162.67 113.912 139.234 1 59.34 ? C7' PLC 401 H 1 HETATM 17 C C8' PLC . . . DA 3 163.759 114.127 138.19 1 60.35 ? C8' PLC 401 H 1 HETATM 18 C C9' PLC . . . DA 3 163.218 114.542 136.827 1 58.98 ? C9' PLC 401 H 1 HETATM 19 C CA' PLC . . . DA 3 162.526 113.406 136.083 1 58.31 ? CA' PLC 401 H 1 HETATM 20 C CB' PLC . . . DA 3 162.131 113.779 134.662 1 58.25 ? CB' PLC 401 H 1 HETATM 21 C CB PLC . . . DA 3 160.563 119.685 146.788 1 61.05 ? CB PLC 401 H 1 HETATM 22 C C1B PLC . . . DA 3 160.608 120.672 145.656 1 57.71 ? C1B PLC 401 H 1 HETATM 23 C C2B PLC . . . DA 3 159.395 121.585 145.595 1 58.14 ? C2B PLC 401 H 1 HETATM 24 C C3B PLC . . . DA 3 159.79 123.051 145.487 1 58.59 ? C3B PLC 401 H 1 HETATM 25 C C4B PLC . . . DA 3 160.699 123.326 144.298 1 59.36 ? C4B PLC 401 H 1 HETATM 26 C C5B PLC . . . DA 3 159.993 123.212 142.953 1 59.2 ? C5B PLC 401 H 1 HETATM 27 C C6B PLC . . . DA 3 160.899 123.535 141.77 1 59.96 ? C6B PLC 401 H 1 HETATM 28 C C7B PLC . . . DA 3 160.57 124.854 141.08 1 59.31 ? C7B PLC 401 H 1 HETATM 29 C C8B PLC . . . DA 3 160.633 126.071 141.998 1 60.34 ? C8B PLC 401 H 1 HETATM 30 C C9B PLC . . . DA 3 161.905 126.895 141.833 1 58.2 ? C9B PLC 401 H 1 HETATM 31 C CAA PLC . . . DA 3 163.128 126.267 142.492 1 57.33 ? CAA PLC 401 H 1 HETATM 32 C CBA PLC . . . DA 3 164.438 126.852 141.982 1 59.11 ? CBA PLC 401 H 1 HETATM 33 O O' PLC . . . DA 3 160.432 114.256 144.913 1 60.99 ? O' PLC 401 H 1 HETATM 34 O OB PLC . . . DA 3 160.152 119.921 147.897 1 62.59 ? OB PLC 401 H 1 HETATM 35 O O2 PLC . . . DA 3 161.411 116.19 145.492 1 61.73 ? O2 PLC 401 H 1 HETATM 36 O O3 PLC . . . DA 3 161.036 118.501 146.422 1 60.27 ? O3 PLC 401 H 1 HETATM 37 O O1P PLC . . . DA 3 163.087 112.435 147.425 1 64.33 ? O1P PLC 401 H 1 HETATM 38 O O2P PLC . . . DA 3 160.862 111.336 148.141 1 57.26 ? O2P PLC 401 H 1 HETATM 39 O O3P PLC . . . DA 3 161.02 113.898 147.776 1 63.93 ? O3P PLC 401 H 1 HETATM 40 O O4P PLC . . . DA 3 162.041 112.965 149.732 1 65.26 ? O4P PLC 401 H 1 HETATM 41 N N PLC . . . DA 3 161.531 115.101 152.013 1 62.33 ? N PLC 401 H 1 HETATM 42 P P PLC . . . DA 3 161.794 112.513 148.166 1 76.38 ? P PLC 401 H 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 98 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #