data_8RND
#
_model_server_result.job_id            ZaWkmYXzPgS-IV93pegP5g 
_model_server_result.datetime_utc      '2025-01-16 06:10:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    8RND 
#
_exptl.entry_id    8RND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RND 
_cell.length_a            44.633 
_cell.length_b            129.22 
_cell.length_c            37.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 136 1_555 A SG CYS 72 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 62 A CYS 170 1_555 A SG CYS 105 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 164 A CYS 272 1_555 A SG CYS 212 A CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B C ACE 1 B ACE 1 1_555 B N A1H5W 2 B A1H5W 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale2 B C A1H5W 2 B A1H5W 2 1_555 B N LYS 3 B LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C MET 6 B MET 6 1_555 B N YWF 7 B YWF 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale4 B C YWF 7 B YWF 7 1_555 B N VAL 8 B VAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 B C TRP 10 B TRP 10 1_555 B N NH2 11 B NH2 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 104 n n 
C1 C2 EDO sing 105 n n 
C1 H11 EDO sing 106 n n 
C1 H12 EDO sing 107 n n 
O1 HO1 EDO sing 108 n n 
C2 O2 EDO sing 109 n n 
C2 H21 EDO sing 110 n n 
C2 H22 EDO sing 111 n n 
O2 HO2 EDO sing 112 n n 
#
_atom_sites.entry_id                     8RND 
_atom_sites.fract_transf_matrix[1][1]    0.022405 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 401 411 EDO EDO . 
D 4 PGE A 1 402 412 PGE PGE . 
E 3 EDO A 1 403 414 EDO EDO . 
F 3 EDO A 1 404 415 EDO EDO . 
G 5 NO3 A 1 405 416 NO3 NO3 . 
H 6 GOL A 1 406 417 GOL GOL . 
I 7 PEG A 1 407 418 PEG PEG . 
J 3 EDO A 1 408 419 EDO EDO . 
K 8 HOH A 1 501 70 HOH HOH . 
K 8 HOH A 2 502 95 HOH HOH . 
K 8 HOH A 3 503 81 HOH HOH . 
K 8 HOH A 4 504 103 HOH HOH . 
K 8 HOH A 5 505 93 HOH HOH . 
K 8 HOH A 6 506 98 HOH HOH . 
K 8 HOH A 7 507 36 HOH HOH . 
K 8 HOH A 8 508 64 HOH HOH . 
K 8 HOH A 9 509 76 HOH HOH . 
K 8 HOH A 10 510 66 HOH HOH . 
K 8 HOH A 11 511 42 HOH HOH . 
K 8 HOH A 12 512 50 HOH HOH . 
K 8 HOH A 13 513 14 HOH HOH . 
K 8 HOH A 14 514 24 HOH HOH . 
K 8 HOH A 15 515 57 HOH HOH . 
K 8 HOH A 16 516 72 HOH HOH . 
K 8 HOH A 17 517 39 HOH HOH . 
K 8 HOH A 18 518 23 HOH HOH . 
K 8 HOH A 19 519 25 HOH HOH . 
K 8 HOH A 20 520 58 HOH HOH . 
K 8 HOH A 21 521 60 HOH HOH . 
K 8 HOH A 22 522 94 HOH HOH . 
K 8 HOH A 23 523 7 HOH HOH . 
K 8 HOH A 24 524 5 HOH HOH . 
K 8 HOH A 25 525 47 HOH HOH . 
K 8 HOH A 26 526 106 HOH HOH . 
K 8 HOH A 27 527 43 HOH HOH . 
K 8 HOH A 28 528 107 HOH HOH . 
K 8 HOH A 29 529 69 HOH HOH . 
K 8 HOH A 30 530 17 HOH HOH . 
K 8 HOH A 31 531 37 HOH HOH . 
K 8 HOH A 32 532 61 HOH HOH . 
K 8 HOH A 33 533 13 HOH HOH . 
K 8 HOH A 34 534 28 HOH HOH . 
K 8 HOH A 35 535 41 HOH HOH . 
K 8 HOH A 36 536 63 HOH HOH . 
K 8 HOH A 37 537 77 HOH HOH . 
K 8 HOH A 38 538 45 HOH HOH . 
K 8 HOH A 39 539 3 HOH HOH . 
K 8 HOH A 40 540 102 HOH HOH . 
K 8 HOH A 41 541 11 HOH HOH . 
K 8 HOH A 42 542 48 HOH HOH . 
K 8 HOH A 43 543 40 HOH HOH . 
K 8 HOH A 44 544 19 HOH HOH . 
K 8 HOH A 45 545 1 HOH HOH . 
K 8 HOH A 46 546 71 HOH HOH . 
K 8 HOH A 47 547 2 HOH HOH . 
K 8 HOH A 48 548 20 HOH HOH . 
K 8 HOH A 49 549 100 HOH HOH . 
K 8 HOH A 50 550 56 HOH HOH . 
K 8 HOH A 51 551 67 HOH HOH . 
K 8 HOH A 52 552 8 HOH HOH . 
K 8 HOH A 53 553 27 HOH HOH . 
K 8 HOH A 54 554 52 HOH HOH . 
K 8 HOH A 55 555 22 HOH HOH . 
K 8 HOH A 56 556 12 HOH HOH . 
K 8 HOH A 57 557 16 HOH HOH . 
K 8 HOH A 58 558 62 HOH HOH . 
K 8 HOH A 59 559 82 HOH HOH . 
K 8 HOH A 60 560 18 HOH HOH . 
K 8 HOH A 61 561 10 HOH HOH . 
K 8 HOH A 62 562 53 HOH HOH . 
K 8 HOH A 63 563 26 HOH HOH . 
K 8 HOH A 64 564 87 HOH HOH . 
K 8 HOH A 65 565 32 HOH HOH . 
K 8 HOH A 66 566 30 HOH HOH . 
K 8 HOH A 67 567 15 HOH HOH . 
K 8 HOH A 68 568 21 HOH HOH . 
K 8 HOH A 69 569 85 HOH HOH . 
K 8 HOH A 70 570 108 HOH HOH . 
K 8 HOH A 71 571 96 HOH HOH . 
K 8 HOH A 72 572 4 HOH HOH . 
K 8 HOH A 73 573 51 HOH HOH . 
K 8 HOH A 74 574 83 HOH HOH . 
K 8 HOH A 75 575 88 HOH HOH . 
K 8 HOH A 76 576 59 HOH HOH . 
K 8 HOH A 77 577 6 HOH HOH . 
K 8 HOH A 78 578 34 HOH HOH . 
K 8 HOH A 79 579 46 HOH HOH . 
K 8 HOH A 80 580 97 HOH HOH . 
K 8 HOH A 81 581 33 HOH HOH . 
K 8 HOH A 82 582 9 HOH HOH . 
K 8 HOH A 83 583 99 HOH HOH . 
K 8 HOH A 84 584 38 HOH HOH . 
K 8 HOH A 85 585 55 HOH HOH . 
K 8 HOH A 86 586 31 HOH HOH . 
K 8 HOH A 87 587 65 HOH HOH . 
K 8 HOH A 88 588 54 HOH HOH . 
K 8 HOH A 89 589 86 HOH HOH . 
K 8 HOH A 90 590 29 HOH HOH . 
K 8 HOH A 91 591 49 HOH HOH . 
K 8 HOH A 92 592 44 HOH HOH . 
K 8 HOH A 93 593 75 HOH HOH . 
K 8 HOH A 94 594 91 HOH HOH . 
K 8 HOH A 95 595 105 HOH HOH . 
K 8 HOH A 96 596 110 HOH HOH . 
K 8 HOH A 97 597 92 HOH HOH . 
K 8 HOH A 98 598 109 HOH HOH . 
K 8 HOH A 99 599 101 HOH HOH . 
K 8 HOH A 100 600 78 HOH HOH . 
K 8 HOH A 101 601 80 HOH HOH . 
K 8 HOH A 102 602 68 HOH HOH . 
K 8 HOH A 103 603 90 HOH HOH . 
K 8 HOH A 104 604 79 HOH HOH . 
K 8 HOH A 105 605 89 HOH HOH . 
K 8 HOH A 106 606 74 HOH HOH . 
K 8 HOH A 107 607 73 HOH HOH . 
K 8 HOH A 108 608 84 HOH HOH . 
L 8 HOH B 1 101 35 HOH HOH . 
L 8 HOH B 2 102 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 -29.899 16.647 -3.434 1 42.31 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . F 3 -29.378 17.869 -2.971 1 45.7 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . F 3 -29.165 15.453 -2.888 1 38.48 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . F 3 -28.878 15.528 -1.504 1 33.62 ? O2 EDO 404 A 1 
HETATM 5 H H11 EDO . . . F 3 -29.859 16.605 -4.403 1 50.95 ? H11 EDO 404 A 1 
HETATM 6 H H12 EDO . . . F 3 -30.834 16.56 -3.19 1 50.95 ? H12 EDO 404 A 1 
HETATM 7 H HO1 EDO . . . F 3 -28.594 17.727 -2.673 1 55.01 ? HO1 EDO 404 A 1 
HETATM 8 H H21 EDO . . . F 3 -28.354 15.369 -3.414 1 46.36 ? H21 EDO 404 A 1 
HETATM 9 H H22 EDO . . . F 3 -29.714 14.68 -3.095 1 46.36 ? H22 EDO 404 A 1 
HETATM 10 H HO2 EDO . . . F 3 -29.559 15.85 -1.11 1 40.52 ? HO2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#