data_8RNO
#
_model_server_result.job_id            -UFgNIeyb674C-VvhJ3Ddw 
_model_server_result.datetime_utc      '2024-11-23 23:01:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rno 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":311}' 
#
_entry.id    8RNO 
#
_exptl.entry_id    8RNO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RNO 
_cell.length_a            76.233 
_cell.length_b            76.233 
_cell.length_c            185.484 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RNO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 231 A CYS 227 1_555 B SG CYS 231 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
covale ? covale1 A ND2 ASN 39 A ASN 35 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 126 A ASN 122 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 147 A ASN 143 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 B ND2 ASN 126 B ASN 122 1_555 R C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
metalc ? metalc1 A SG CYS 21 A CYS 17 1_555 F FE HEM . A HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 A OE2 GLU 89 A GLU 85 1_555 P MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc3 A O HIS 90 A HIS 86 1_555 P MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 A OG SER 93 A SER 89 1_555 P MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc5 F O2A HEM . A HEM 304 1_555 P MG MG . A MG 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc6 F FE HEM . A HEM 304 1_555 W O HOH . A HOH 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc7 P MG MG . A MG 314 1_555 W O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc8 P MG MG . A MG 314 1_555 W O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc9 B SG CYS 21 B CYS 17 1_555 S FE HEM . B HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc10 B OE2 GLU 89 B GLU 85 1_555 U MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc11 B O HIS 90 B HIS 86 1_555 U MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc12 B OG SER 93 B SER 89 1_555 U MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc13 S O2D HEM . B HEM 302 1_555 U MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc14 S FE HEM . B HEM 302 1_555 X O HOH . B HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc15 U MG MG . B MG 304 1_555 X O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     8RNO 
_atom_sites.fract_transf_matrix[1][1]    0.013118 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013118 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 301 303 NAG NAG . 
D 2 NAG A 1 302 304 NAG NAG . 
E 2 NAG A 1 303 305 NAG NAG . 
F 3 HEM A 1 304 301 HEM HEM . 
G 4 A1H13 A 1 305 302 A1H13 ISR . 
H 5 PEG A 1 306 306 PEG PEG . 
I 5 PEG A 1 307 307 PEG PEG . 
J 6 GOL A 1 308 308 GOL GOL . 
K 5 PEG A 1 309 309 PEG PEG . 
L 5 PEG A 1 310 310 PEG PEG . 
M 6 GOL A 1 311 311 GOL GOL . 
N 6 GOL A 1 312 312 GOL GOL . 
O 6 GOL A 1 313 313 GOL GOL . 
P 7 MG A 1 314 2 MG MG . 
Q 8 SO4 A 1 315 6 SO4 SO4 . 
R 2 NAG B 1 301 303 NAG NAG . 
S 3 HEM B 1 302 301 HEM HEM . 
T 5 PEG B 1 303 306 PEG PEG . 
U 7 MG B 1 304 1 MG MG . 
V 8 SO4 B 1 305 5 SO4 SO4 . 
W 9 HOH A 1 401 152 HOH HOH . 
W 9 HOH A 2 402 101 HOH HOH . 
W 9 HOH A 3 403 136 HOH HOH . 
W 9 HOH A 4 404 39 HOH HOH . 
W 9 HOH A 5 405 119 HOH HOH . 
W 9 HOH A 6 406 167 HOH HOH . 
W 9 HOH A 7 407 11 HOH HOH . 
W 9 HOH A 8 408 111 HOH HOH . 
W 9 HOH A 9 409 110 HOH HOH . 
W 9 HOH A 10 410 102 HOH HOH . 
W 9 HOH A 11 411 125 HOH HOH . 
W 9 HOH A 12 412 18 HOH HOH . 
W 9 HOH A 13 413 145 HOH HOH . 
W 9 HOH A 14 414 13 HOH HOH . 
W 9 HOH A 15 415 23 HOH HOH . 
W 9 HOH A 16 416 151 HOH HOH . 
W 9 HOH A 17 417 52 HOH HOH . 
W 9 HOH A 18 418 12 HOH HOH . 
W 9 HOH A 19 419 5 HOH HOH . 
W 9 HOH A 20 420 61 HOH HOH . 
W 9 HOH A 21 421 109 HOH HOH . 
W 9 HOH A 22 422 50 HOH HOH . 
W 9 HOH A 23 423 4 HOH HOH . 
W 9 HOH A 24 424 54 HOH HOH . 
W 9 HOH A 25 425 3 HOH HOH . 
W 9 HOH A 26 426 49 HOH HOH . 
W 9 HOH A 27 427 63 HOH HOH . 
W 9 HOH A 28 428 147 HOH HOH . 
W 9 HOH A 29 429 138 HOH HOH . 
W 9 HOH A 30 430 118 HOH HOH . 
W 9 HOH A 31 431 56 HOH HOH . 
W 9 HOH A 32 432 84 HOH HOH . 
W 9 HOH A 33 433 9 HOH HOH . 
W 9 HOH A 34 434 20 HOH HOH . 
W 9 HOH A 35 435 122 HOH HOH . 
W 9 HOH A 36 436 65 HOH HOH . 
W 9 HOH A 37 437 22 HOH HOH . 
W 9 HOH A 38 438 114 HOH HOH . 
W 9 HOH A 39 439 100 HOH HOH . 
W 9 HOH A 40 440 97 HOH HOH . 
W 9 HOH A 41 441 14 HOH HOH . 
W 9 HOH A 42 442 38 HOH HOH . 
W 9 HOH A 43 443 140 HOH HOH . 
W 9 HOH A 44 444 19 HOH HOH . 
W 9 HOH A 45 445 58 HOH HOH . 
W 9 HOH A 46 446 67 HOH HOH . 
W 9 HOH A 47 447 80 HOH HOH . 
W 9 HOH A 48 448 108 HOH HOH . 
W 9 HOH A 49 449 24 HOH HOH . 
W 9 HOH A 50 450 117 HOH HOH . 
W 9 HOH A 51 451 7 HOH HOH . 
W 9 HOH A 52 452 34 HOH HOH . 
W 9 HOH A 53 453 28 HOH HOH . 
W 9 HOH A 54 454 69 HOH HOH . 
W 9 HOH A 55 455 123 HOH HOH . 
W 9 HOH A 56 456 15 HOH HOH . 
W 9 HOH A 57 457 165 HOH HOH . 
W 9 HOH A 58 458 21 HOH HOH . 
W 9 HOH A 59 459 42 HOH HOH . 
W 9 HOH A 60 460 16 HOH HOH . 
W 9 HOH A 61 461 120 HOH HOH . 
W 9 HOH A 62 462 45 HOH HOH . 
W 9 HOH A 63 463 142 HOH HOH . 
W 9 HOH A 64 464 8 HOH HOH . 
W 9 HOH A 65 465 27 HOH HOH . 
W 9 HOH A 66 466 153 HOH HOH . 
W 9 HOH A 67 467 10 HOH HOH . 
W 9 HOH A 68 468 103 HOH HOH . 
W 9 HOH A 69 469 92 HOH HOH . 
W 9 HOH A 70 470 41 HOH HOH . 
W 9 HOH A 71 471 126 HOH HOH . 
W 9 HOH A 72 472 6 HOH HOH . 
W 9 HOH A 73 473 31 HOH HOH . 
W 9 HOH A 74 474 139 HOH HOH . 
W 9 HOH A 75 475 127 HOH HOH . 
W 9 HOH A 76 476 51 HOH HOH . 
W 9 HOH A 77 477 32 HOH HOH . 
W 9 HOH A 78 478 149 HOH HOH . 
W 9 HOH A 79 479 62 HOH HOH . 
W 9 HOH A 80 480 143 HOH HOH . 
W 9 HOH A 81 481 74 HOH HOH . 
W 9 HOH A 82 482 91 HOH HOH . 
W 9 HOH A 83 483 68 HOH HOH . 
W 9 HOH A 84 484 146 HOH HOH . 
W 9 HOH A 85 485 59 HOH HOH . 
W 9 HOH A 86 486 30 HOH HOH . 
W 9 HOH A 87 487 53 HOH HOH . 
W 9 HOH A 88 488 105 HOH HOH . 
W 9 HOH A 89 489 1 HOH HOH . 
W 9 HOH A 90 490 35 HOH HOH . 
W 9 HOH A 91 491 55 HOH HOH . 
W 9 HOH A 92 492 25 HOH HOH . 
W 9 HOH A 93 493 150 HOH HOH . 
W 9 HOH A 94 494 26 HOH HOH . 
W 9 HOH A 95 495 155 HOH HOH . 
W 9 HOH A 96 496 148 HOH HOH . 
W 9 HOH A 97 497 113 HOH HOH . 
W 9 HOH A 98 498 36 HOH HOH . 
W 9 HOH A 99 499 104 HOH HOH . 
W 9 HOH A 100 500 71 HOH HOH . 
W 9 HOH A 101 501 112 HOH HOH . 
W 9 HOH A 102 502 44 HOH HOH . 
W 9 HOH A 103 503 89 HOH HOH . 
W 9 HOH A 104 504 37 HOH HOH . 
W 9 HOH A 105 505 115 HOH HOH . 
W 9 HOH A 106 506 144 HOH HOH . 
W 9 HOH A 107 507 154 HOH HOH . 
W 9 HOH A 108 508 33 HOH HOH . 
W 9 HOH A 109 509 156 HOH HOH . 
W 9 HOH A 110 510 141 HOH HOH . 
W 9 HOH A 111 511 107 HOH HOH . 
W 9 HOH A 112 512 124 HOH HOH . 
W 9 HOH A 113 513 60 HOH HOH . 
W 9 HOH A 114 514 121 HOH HOH . 
W 9 HOH A 115 515 106 HOH HOH . 
W 9 HOH A 116 516 116 HOH HOH . 
X 9 HOH B 1 401 164 HOH HOH . 
X 9 HOH B 2 402 130 HOH HOH . 
X 9 HOH B 3 403 157 HOH HOH . 
X 9 HOH B 4 404 158 HOH HOH . 
X 9 HOH B 5 405 57 HOH HOH . 
X 9 HOH B 6 406 29 HOH HOH . 
X 9 HOH B 7 407 128 HOH HOH . 
X 9 HOH B 8 408 46 HOH HOH . 
X 9 HOH B 9 409 131 HOH HOH . 
X 9 HOH B 10 410 161 HOH HOH . 
X 9 HOH B 11 411 64 HOH HOH . 
X 9 HOH B 12 412 93 HOH HOH . 
X 9 HOH B 13 413 47 HOH HOH . 
X 9 HOH B 14 414 166 HOH HOH . 
X 9 HOH B 15 415 81 HOH HOH . 
X 9 HOH B 16 416 66 HOH HOH . 
X 9 HOH B 17 417 129 HOH HOH . 
X 9 HOH B 18 418 134 HOH HOH . 
X 9 HOH B 19 419 94 HOH HOH . 
X 9 HOH B 20 420 76 HOH HOH . 
X 9 HOH B 21 421 72 HOH HOH . 
X 9 HOH B 22 422 88 HOH HOH . 
X 9 HOH B 23 423 135 HOH HOH . 
X 9 HOH B 24 424 95 HOH HOH . 
X 9 HOH B 25 425 48 HOH HOH . 
X 9 HOH B 26 426 96 HOH HOH . 
X 9 HOH B 27 427 159 HOH HOH . 
X 9 HOH B 28 428 87 HOH HOH . 
X 9 HOH B 29 429 85 HOH HOH . 
X 9 HOH B 30 430 79 HOH HOH . 
X 9 HOH B 31 431 43 HOH HOH . 
X 9 HOH B 32 432 162 HOH HOH . 
X 9 HOH B 33 433 90 HOH HOH . 
X 9 HOH B 34 434 99 HOH HOH . 
X 9 HOH B 35 435 83 HOH HOH . 
X 9 HOH B 36 436 86 HOH HOH . 
X 9 HOH B 37 437 82 HOH HOH . 
X 9 HOH B 38 438 77 HOH HOH . 
X 9 HOH B 39 439 17 HOH HOH . 
X 9 HOH B 40 440 78 HOH HOH . 
X 9 HOH B 41 441 132 HOH HOH . 
X 9 HOH B 42 442 2 HOH HOH . 
X 9 HOH B 43 443 160 HOH HOH . 
X 9 HOH B 44 444 133 HOH HOH . 
X 9 HOH B 45 445 70 HOH HOH . 
X 9 HOH B 46 446 98 HOH HOH . 
X 9 HOH B 47 447 40 HOH HOH . 
X 9 HOH B 48 448 73 HOH HOH . 
X 9 HOH B 49 449 163 HOH HOH . 
X 9 HOH B 50 450 75 HOH HOH . 
X 9 HOH B 51 451 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 6 14.11 25.213 -7.381 1 82.72 ? C1 GOL 311 A 1 
HETATM 2 O O1 GOL . . . M 6 13.481 24.195 -8.16 1 81.61 ? O1 GOL 311 A 1 
HETATM 3 C C2 GOL . . . M 6 14.51 24.699 -6.016 1 80.24 ? C2 GOL 311 A 1 
HETATM 4 O O2 GOL . . . M 6 15.586 23.768 -6.15 1 81.86 ? O2 GOL 311 A 1 
HETATM 5 C C3 GOL . . . M 6 14.873 25.803 -5.042 1 85.26 ? C3 GOL 311 A 1 
HETATM 6 O O3 GOL . . . M 6 16.221 26.253 -5.167 1 79.5 ? O3 GOL 311 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#