data_8RNP # _model_server_result.job_id RuS7UsPh5z00aFTEecIYzA _model_server_result.datetime_utc '2024-11-27 14:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rnp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":308}' # _entry.id 8RNP # _exptl.entry_id 8RNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RNP _cell.length_a 75.01 _cell.length_b 75.01 _cell.length_c 186.085 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 M N N ? 8 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 231 A CYS 227 1_555 B SG CYS 231 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? covale ? covale1 A ND2 ASN 147 A ASN 143 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? covale ? covale2 B ND2 ASN 126 B ASN 122 1_555 O C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? covale ? covale3 B ND2 ASN 147 B ASN 143 1_555 S C1 NAG . B NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? metalc ? metalc1 A SG CYS 21 A CYS 17 1_555 C FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A OE2 GLU 89 A GLU 85 1_555 K MG MG . A MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A O HIS 90 A HIS 86 1_555 K MG MG . A MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A OG SER 93 A SER 89 1_555 K MG MG . A MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 C O1A HEM . A HEM 301 1_555 K MG MG . A MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 C FE HEM . A HEM 301 1_555 V O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc7 K MG MG . A MG 309 1_555 V O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 K MG MG . A MG 309 1_555 V O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc9 B SG CYS 21 B CYS 17 1_555 N FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc10 B OE2 GLU 89 B GLU 85 1_555 T MG MG . B MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc11 B O HIS 90 B HIS 86 1_555 T MG MG . B MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc12 B OG SER 93 B SER 89 1_555 T MG MG . B MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc13 N O1D HEM . B HEM 301 1_555 T MG MG . B MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc14 T MG MG . B MG 307 1_555 W O HOH . B HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc15 T MG MG . B MG 307 1_555 W O HOH . B HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 457 n n S O2 SO4 doub 458 n n S O3 SO4 sing 459 n n S O4 SO4 sing 460 n n # _atom_sites.entry_id 8RNP _atom_sites.fract_transf_matrix[1][1] 0.013332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 301 301 HEM HEM . D 3 NAG A 1 302 303 NAG NAG . E 4 GOL A 1 303 305 GOL GOL . F 4 GOL A 1 304 306 GOL GOL . G 5 PEG A 1 305 307 PEG PEG . H 4 GOL A 1 306 309 GOL GOL . I 6 9IR A 1 307 310 9IR RMO . J 3 NAG A 1 308 311 NAG NAG . K 7 MG A 1 309 2 MG MG . L 8 SO4 A 1 310 1 SO4 SO4 . M 8 SO4 A 1 311 3 SO4 SO4 . N 2 HEM B 1 301 301 HEM HEM . O 3 NAG B 1 302 302 NAG NAG . P 4 GOL B 1 303 307 GOL GOL . Q 5 PEG B 1 304 308 PEG PEG . R 4 GOL B 1 305 309 GOL GOL . S 3 NAG B 1 306 310 NAG NAG . T 7 MG B 1 307 1 MG MG . U 8 SO4 B 1 308 4 SO4 SO4 . V 9 HOH A 1 401 141 HOH HOH . V 9 HOH A 2 402 102 HOH HOH . V 9 HOH A 3 403 133 HOH HOH . V 9 HOH A 4 404 199 HOH HOH . V 9 HOH A 5 405 37 HOH HOH . V 9 HOH A 6 406 200 HOH HOH . V 9 HOH A 7 407 143 HOH HOH . V 9 HOH A 8 408 105 HOH HOH . V 9 HOH A 9 409 142 HOH HOH . V 9 HOH A 10 410 144 HOH HOH . V 9 HOH A 11 411 25 HOH HOH . V 9 HOH A 12 412 187 HOH HOH . V 9 HOH A 13 413 101 HOH HOH . V 9 HOH A 14 414 18 HOH HOH . V 9 HOH A 15 415 21 HOH HOH . V 9 HOH A 16 416 81 HOH HOH . V 9 HOH A 17 417 35 HOH HOH . V 9 HOH A 18 418 22 HOH HOH . V 9 HOH A 19 419 71 HOH HOH . V 9 HOH A 20 420 90 HOH HOH . V 9 HOH A 21 421 72 HOH HOH . V 9 HOH A 22 422 88 HOH HOH . V 9 HOH A 23 423 118 HOH HOH . V 9 HOH A 24 424 146 HOH HOH . V 9 HOH A 25 425 203 HOH HOH . V 9 HOH A 26 426 28 HOH HOH . V 9 HOH A 27 427 56 HOH HOH . V 9 HOH A 28 428 49 HOH HOH . V 9 HOH A 29 429 197 HOH HOH . V 9 HOH A 30 430 149 HOH HOH . V 9 HOH A 31 431 92 HOH HOH . V 9 HOH A 32 432 132 HOH HOH . V 9 HOH A 33 433 77 HOH HOH . V 9 HOH A 34 434 34 HOH HOH . V 9 HOH A 35 435 3 HOH HOH . V 9 HOH A 36 436 2 HOH HOH . V 9 HOH A 37 437 45 HOH HOH . V 9 HOH A 38 438 128 HOH HOH . V 9 HOH A 39 439 82 HOH HOH . V 9 HOH A 40 440 70 HOH HOH . V 9 HOH A 41 441 95 HOH HOH . V 9 HOH A 42 442 74 HOH HOH . V 9 HOH A 43 443 33 HOH HOH . V 9 HOH A 44 444 24 HOH HOH . V 9 HOH A 45 445 30 HOH HOH . V 9 HOH A 46 446 7 HOH HOH . V 9 HOH A 47 447 14 HOH HOH . V 9 HOH A 48 448 140 HOH HOH . V 9 HOH A 49 449 4 HOH HOH . V 9 HOH A 50 450 48 HOH HOH . V 9 HOH A 51 451 110 HOH HOH . V 9 HOH A 52 452 54 HOH HOH . V 9 HOH A 53 453 211 HOH HOH . V 9 HOH A 54 454 108 HOH HOH . V 9 HOH A 55 455 127 HOH HOH . V 9 HOH A 56 456 69 HOH HOH . V 9 HOH A 57 457 60 HOH HOH . V 9 HOH A 58 458 43 HOH HOH . V 9 HOH A 59 459 124 HOH HOH . V 9 HOH A 60 460 104 HOH HOH . V 9 HOH A 61 461 40 HOH HOH . V 9 HOH A 62 462 8 HOH HOH . V 9 HOH A 63 463 89 HOH HOH . V 9 HOH A 64 464 131 HOH HOH . V 9 HOH A 65 465 117 HOH HOH . V 9 HOH A 66 466 36 HOH HOH . V 9 HOH A 67 467 107 HOH HOH . V 9 HOH A 68 468 68 HOH HOH . V 9 HOH A 69 469 13 HOH HOH . V 9 HOH A 70 470 6 HOH HOH . V 9 HOH A 71 471 42 HOH HOH . V 9 HOH A 72 472 76 HOH HOH . V 9 HOH A 73 473 204 HOH HOH . V 9 HOH A 74 474 87 HOH HOH . V 9 HOH A 75 475 188 HOH HOH . V 9 HOH A 76 476 170 HOH HOH . V 9 HOH A 77 477 57 HOH HOH . V 9 HOH A 78 478 125 HOH HOH . V 9 HOH A 79 479 139 HOH HOH . V 9 HOH A 80 480 75 HOH HOH . V 9 HOH A 81 481 41 HOH HOH . V 9 HOH A 82 482 55 HOH HOH . V 9 HOH A 83 483 5 HOH HOH . V 9 HOH A 84 484 134 HOH HOH . V 9 HOH A 85 485 135 HOH HOH . V 9 HOH A 86 486 193 HOH HOH . V 9 HOH A 87 487 65 HOH HOH . V 9 HOH A 88 488 15 HOH HOH . V 9 HOH A 89 489 111 HOH HOH . V 9 HOH A 90 490 46 HOH HOH . V 9 HOH A 91 491 192 HOH HOH . V 9 HOH A 92 492 32 HOH HOH . V 9 HOH A 93 493 99 HOH HOH . V 9 HOH A 94 494 53 HOH HOH . V 9 HOH A 95 495 63 HOH HOH . V 9 HOH A 96 496 112 HOH HOH . V 9 HOH A 97 497 148 HOH HOH . V 9 HOH A 98 498 201 HOH HOH . V 9 HOH A 99 499 147 HOH HOH . V 9 HOH A 100 500 73 HOH HOH . V 9 HOH A 101 501 62 HOH HOH . V 9 HOH A 102 502 11 HOH HOH . V 9 HOH A 103 503 86 HOH HOH . V 9 HOH A 104 504 66 HOH HOH . V 9 HOH A 105 505 38 HOH HOH . V 9 HOH A 106 506 80 HOH HOH . V 9 HOH A 107 507 79 HOH HOH . V 9 HOH A 108 508 195 HOH HOH . V 9 HOH A 109 509 123 HOH HOH . V 9 HOH A 110 510 216 HOH HOH . V 9 HOH A 111 511 67 HOH HOH . V 9 HOH A 112 512 109 HOH HOH . V 9 HOH A 113 513 106 HOH HOH . V 9 HOH A 114 514 145 HOH HOH . V 9 HOH A 115 515 194 HOH HOH . V 9 HOH A 116 516 52 HOH HOH . V 9 HOH A 117 517 97 HOH HOH . V 9 HOH A 118 518 91 HOH HOH . V 9 HOH A 119 519 150 HOH HOH . V 9 HOH A 120 520 64 HOH HOH . V 9 HOH A 121 521 129 HOH HOH . V 9 HOH A 122 522 215 HOH HOH . V 9 HOH A 123 523 186 HOH HOH . V 9 HOH A 124 524 130 HOH HOH . V 9 HOH A 125 525 93 HOH HOH . V 9 HOH A 126 526 185 HOH HOH . V 9 HOH A 127 527 58 HOH HOH . V 9 HOH A 128 528 61 HOH HOH . V 9 HOH A 129 529 59 HOH HOH . W 9 HOH B 1 401 50 HOH HOH . W 9 HOH B 2 402 136 HOH HOH . W 9 HOH B 3 403 159 HOH HOH . W 9 HOH B 4 404 154 HOH HOH . W 9 HOH B 5 405 98 HOH HOH . W 9 HOH B 6 406 179 HOH HOH . W 9 HOH B 7 407 9 HOH HOH . W 9 HOH B 8 408 26 HOH HOH . W 9 HOH B 9 409 198 HOH HOH . W 9 HOH B 10 410 168 HOH HOH . W 9 HOH B 11 411 29 HOH HOH . W 9 HOH B 12 412 177 HOH HOH . W 9 HOH B 13 413 78 HOH HOH . W 9 HOH B 14 414 137 HOH HOH . W 9 HOH B 15 415 158 HOH HOH . W 9 HOH B 16 416 191 HOH HOH . W 9 HOH B 17 417 19 HOH HOH . W 9 HOH B 18 418 196 HOH HOH . W 9 HOH B 19 419 175 HOH HOH . W 9 HOH B 20 420 96 HOH HOH . W 9 HOH B 21 421 163 HOH HOH . W 9 HOH B 22 422 166 HOH HOH . W 9 HOH B 23 423 212 HOH HOH . W 9 HOH B 24 424 210 HOH HOH . W 9 HOH B 25 425 182 HOH HOH . W 9 HOH B 26 426 83 HOH HOH . W 9 HOH B 27 427 138 HOH HOH . W 9 HOH B 28 428 121 HOH HOH . W 9 HOH B 29 429 116 HOH HOH . W 9 HOH B 30 430 157 HOH HOH . W 9 HOH B 31 431 174 HOH HOH . W 9 HOH B 32 432 206 HOH HOH . W 9 HOH B 33 433 39 HOH HOH . W 9 HOH B 34 434 164 HOH HOH . W 9 HOH B 35 435 162 HOH HOH . W 9 HOH B 36 436 208 HOH HOH . W 9 HOH B 37 437 156 HOH HOH . W 9 HOH B 38 438 84 HOH HOH . W 9 HOH B 39 439 47 HOH HOH . W 9 HOH B 40 440 114 HOH HOH . W 9 HOH B 41 441 184 HOH HOH . W 9 HOH B 42 442 51 HOH HOH . W 9 HOH B 43 443 122 HOH HOH . W 9 HOH B 44 444 178 HOH HOH . W 9 HOH B 45 445 169 HOH HOH . W 9 HOH B 46 446 180 HOH HOH . W 9 HOH B 47 447 16 HOH HOH . W 9 HOH B 48 448 1 HOH HOH . W 9 HOH B 49 449 115 HOH HOH . W 9 HOH B 50 450 119 HOH HOH . W 9 HOH B 51 451 209 HOH HOH . W 9 HOH B 52 452 12 HOH HOH . W 9 HOH B 53 453 172 HOH HOH . W 9 HOH B 54 454 10 HOH HOH . W 9 HOH B 55 455 165 HOH HOH . W 9 HOH B 56 456 207 HOH HOH . W 9 HOH B 57 457 23 HOH HOH . W 9 HOH B 58 458 31 HOH HOH . W 9 HOH B 59 459 183 HOH HOH . W 9 HOH B 60 460 167 HOH HOH . W 9 HOH B 61 461 161 HOH HOH . W 9 HOH B 62 462 173 HOH HOH . W 9 HOH B 63 463 120 HOH HOH . W 9 HOH B 64 464 214 HOH HOH . W 9 HOH B 65 465 126 HOH HOH . W 9 HOH B 66 466 27 HOH HOH . W 9 HOH B 67 467 113 HOH HOH . W 9 HOH B 68 468 44 HOH HOH . W 9 HOH B 69 469 171 HOH HOH . W 9 HOH B 70 470 176 HOH HOH . W 9 HOH B 71 471 151 HOH HOH . W 9 HOH B 72 472 153 HOH HOH . W 9 HOH B 73 473 189 HOH HOH . W 9 HOH B 74 474 20 HOH HOH . W 9 HOH B 75 475 160 HOH HOH . W 9 HOH B 76 476 190 HOH HOH . W 9 HOH B 77 477 181 HOH HOH . W 9 HOH B 78 478 152 HOH HOH . W 9 HOH B 79 479 17 HOH HOH . W 9 HOH B 80 480 213 HOH HOH . W 9 HOH B 81 481 155 HOH HOH . W 9 HOH B 82 482 202 HOH HOH . W 9 HOH B 83 483 85 HOH HOH . W 9 HOH B 84 484 100 HOH HOH . W 9 HOH B 85 485 94 HOH HOH . W 9 HOH B 86 486 205 HOH HOH . W 9 HOH B 87 487 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . U 8 -7.969 -17.903 36.689 1 86.83 ? S SO4 308 B 1 HETATM 2 O O1 SO4 . . . U 8 -6.869 -17.623 35.804 1 99.28 ? O1 SO4 308 B 1 HETATM 3 O O2 SO4 . . . U 8 -9.183 -17.972 35.922 1 94.45 ? O2 SO4 308 B 1 HETATM 4 O O3 SO4 . . . U 8 -7.74 -19.162 37.346 1 97.87 ? O3 SO4 308 B 1 HETATM 5 O O4 SO4 . . . U 8 -8.075 -16.859 37.67 1 77.43 ? O4 SO4 308 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #