data_8ROA # _model_server_result.job_id HWO83_b5l_mI-vUWoMYaVA _model_server_result.datetime_utc '2024-11-22 22:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8roa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2000}' # _entry.id 8ROA # _exptl.entry_id 8ROA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.66 _cell.angle_gamma 90 _cell.entry_id 8ROA _cell.length_a 189.311 _cell.length_b 65.278 _cell.length_c 105.762 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ROA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8ROA _atom_sites.fract_transf_matrix[1][1] 0.005282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002652 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 2000 2000 ADP ADP . F 3 ADP C 1 2000 2000 ADP ADP . G 4 HOH A 1 2101 18 HOH HOH . G 4 HOH A 2 2102 40 HOH HOH . G 4 HOH A 3 2103 1 HOH HOH . G 4 HOH A 4 2104 13 HOH HOH . G 4 HOH A 5 2105 62 HOH HOH . G 4 HOH A 6 2106 38 HOH HOH . G 4 HOH A 7 2107 16 HOH HOH . G 4 HOH A 8 2108 61 HOH HOH . G 4 HOH A 9 2109 56 HOH HOH . G 4 HOH A 10 2110 4 HOH HOH . G 4 HOH A 11 2111 14 HOH HOH . G 4 HOH A 12 2112 63 HOH HOH . G 4 HOH A 13 2113 19 HOH HOH . G 4 HOH A 14 2114 15 HOH HOH . G 4 HOH A 15 2115 12 HOH HOH . G 4 HOH A 16 2116 50 HOH HOH . G 4 HOH A 17 2117 9 HOH HOH . G 4 HOH A 18 2118 10 HOH HOH . G 4 HOH A 19 2119 60 HOH HOH . G 4 HOH A 20 2120 53 HOH HOH . G 4 HOH A 21 2121 5 HOH HOH . G 4 HOH A 22 2122 7 HOH HOH . G 4 HOH A 23 2123 3 HOH HOH . G 4 HOH A 24 2124 11 HOH HOH . G 4 HOH A 25 2125 17 HOH HOH . G 4 HOH A 26 2126 57 HOH HOH . G 4 HOH A 27 2127 51 HOH HOH . G 4 HOH A 28 2128 37 HOH HOH . G 4 HOH A 29 2129 8 HOH HOH . G 4 HOH A 30 2130 59 HOH HOH . G 4 HOH A 31 2131 52 HOH HOH . G 4 HOH A 32 2132 36 HOH HOH . H 4 HOH B 1 701 20 HOH HOH . H 4 HOH B 2 702 21 HOH HOH . H 4 HOH B 3 703 55 HOH HOH . H 4 HOH B 4 704 43 HOH HOH . H 4 HOH B 5 705 54 HOH HOH . I 4 HOH C 1 2101 45 HOH HOH . I 4 HOH C 2 2102 26 HOH HOH . I 4 HOH C 3 2103 42 HOH HOH . I 4 HOH C 4 2104 47 HOH HOH . I 4 HOH C 5 2105 25 HOH HOH . I 4 HOH C 6 2106 28 HOH HOH . I 4 HOH C 7 2107 44 HOH HOH . I 4 HOH C 8 2108 30 HOH HOH . I 4 HOH C 9 2109 66 HOH HOH . I 4 HOH C 10 2110 46 HOH HOH . I 4 HOH C 11 2111 49 HOH HOH . I 4 HOH C 12 2112 48 HOH HOH . I 4 HOH C 13 2113 34 HOH HOH . I 4 HOH C 14 2114 24 HOH HOH . I 4 HOH C 15 2115 41 HOH HOH . I 4 HOH C 16 2116 32 HOH HOH . I 4 HOH C 17 2117 39 HOH HOH . I 4 HOH C 18 2118 31 HOH HOH . I 4 HOH C 19 2119 22 HOH HOH . I 4 HOH C 20 2120 68 HOH HOH . I 4 HOH C 21 2121 65 HOH HOH . I 4 HOH C 22 2122 64 HOH HOH . I 4 HOH C 23 2123 29 HOH HOH . I 4 HOH C 24 2124 67 HOH HOH . I 4 HOH C 25 2125 23 HOH HOH . J 4 HOH D 1 701 35 HOH HOH . J 4 HOH D 2 702 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 3 26.447 -18.95 7.212 1 65.33 ? PB ADP 2000 A 1 HETATM 2 O O1B ADP . . . E 3 25.674 -19.472 6.015 1 61.07 ? O1B ADP 2000 A 1 HETATM 3 O O2B ADP . . . E 3 26.796 -17.49 6.973 1 76.36 -1 O2B ADP 2000 A 1 HETATM 4 O O3B ADP . . . E 3 25.578 -19.025 8.455 1 55.92 -1 O3B ADP 2000 A 1 HETATM 5 P PA ADP . . . E 3 28.764 -19.997 8.793 1 73.57 ? PA ADP 2000 A 1 HETATM 6 O O1A ADP . . . E 3 28.606 -21.376 9.404 1 80.87 -1 O1A ADP 2000 A 1 HETATM 7 O O2A ADP . . . E 3 28.428 -19.008 9.885 1 57.48 ? O2A ADP 2000 A 1 HETATM 8 O O3A ADP . . . E 3 27.82 -19.859 7.42 1 58.05 ? O3A ADP 2000 A 1 HETATM 9 O O5' ADP . . . E 3 30.345 -19.811 8.362 1 71.25 ? O5' ADP 2000 A 1 HETATM 10 C C5' ADP . . . E 3 30.754 -20.483 7.222 1 61.28 ? C5' ADP 2000 A 1 HETATM 11 C C4' ADP . . . E 3 32.123 -20.794 7.311 1 70.59 ? C4' ADP 2000 A 1 HETATM 12 O O4' ADP . . . E 3 32.73 -20.665 8.684 1 68.04 ? O4' ADP 2000 A 1 HETATM 13 C C3' ADP . . . E 3 32.372 -22.298 6.925 1 76.47 ? C3' ADP 2000 A 1 HETATM 14 O O3' ADP . . . E 3 33.074 -22.305 5.584 1 79.93 ? O3' ADP 2000 A 1 HETATM 15 C C2' ADP . . . E 3 33.135 -22.751 7.795 1 77.24 ? C2' ADP 2000 A 1 HETATM 16 O O2' ADP . . . E 3 34.185 -23.582 7.139 1 82.92 ? O2' ADP 2000 A 1 HETATM 17 C C1' ADP . . . E 3 33.767 -21.421 8.537 1 67.51 ? C1' ADP 2000 A 1 HETATM 18 N N9 ADP . . . E 3 34.437 -21.742 9.791 1 61.56 ? N9 ADP 2000 A 1 HETATM 19 C C8 ADP . . . E 3 33.911 -22.381 10.829 1 56.17 ? C8 ADP 2000 A 1 HETATM 20 N N7 ADP . . . E 3 34.828 -22.489 11.792 1 58.67 ? N7 ADP 2000 A 1 HETATM 21 C C5 ADP . . . E 3 35.982 -21.919 11.393 1 53.61 ? C5 ADP 2000 A 1 HETATM 22 C C6 ADP . . . E 3 37.28 -21.714 11.934 1 55.29 ? C6 ADP 2000 A 1 HETATM 23 N N6 ADP . . . E 3 37.645 -22.168 13.264 1 54.26 ? N6 ADP 2000 A 1 HETATM 24 N N1 ADP . . . E 3 38.215 -21.08 11.227 1 56.83 ? N1 ADP 2000 A 1 HETATM 25 C C2 ADP . . . E 3 37.93 -20.64 10.01 1 51.04 ? C2 ADP 2000 A 1 HETATM 26 N N3 ADP . . . E 3 36.724 -20.812 9.472 1 59.86 ? N3 ADP 2000 A 1 HETATM 27 C C4 ADP . . . E 3 35.723 -21.445 10.118 1 60.94 ? C4 ADP 2000 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #