data_8RP6
#
_model_server_result.job_id            PtQlsrxRpiQ9hhfcFoEKNg 
_model_server_result.datetime_utc      '2025-02-03 16:00:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rp6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    8RP6 
#
_exptl.entry_id    8RP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RP6 
_cell.length_a            79.505 
_cell.length_b            108.326 
_cell.length_c            179.758 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,V 1 1 
D,P,Q,R,S,T,U,Y 1 2 
B,C,H,I,J,K,L,M,N,O,W,X 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -79.505 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 81 AAA CYS 79 1_555 E ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc2 A ND1 HIS 130 AAA HIS 128 1_555 E ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc3 A NE2 HIS 170 AAA HIS 168 1_555 E ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc4 E ZN ZN . AAA ZN 301 1_555 V O HOH . AAA HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc5 B SG CYS 81 BBB CYS 79 1_555 H ZN ZN . BBB ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc6 B ND1 HIS 130 BBB HIS 128 1_555 H ZN ZN . BBB ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc7 B NE2 HIS 170 BBB HIS 168 1_555 H ZN ZN . BBB ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc8 H ZN ZN . BBB ZN 301 1_555 W O HOH . BBB HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc9 J MG MG . CCC MG 502 1_555 X O HOH . CCC HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc10 K MG MG . CCC MG 503 1_555 X O HOH . CCC HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc11 K MG MG . CCC MG 503 1_555 Y O HOH . DDD HOH 606 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc12 K MG MG . CCC MG 503 1_555 Y O HOH . DDD HOH 610 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc13 D OE1 GLU 440 DDD GLU 439 1_555 Q MG MG . DDD MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8RP6 
_atom_sites.fract_transf_matrix[1][1]    0.012578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN AAA 1 301 301 ZN ZN . 
F 4 GOL AAA 1 302 1001 GOL GOL . 
G 4 GOL AAA 1 303 1002 GOL GOL . 
H 3 ZN BBB 1 301 301 ZN ZN . 
I 5 TRP CCC 1 501 501 TRP TRP . 
J 6 MG CCC 1 502 601 MG MG . 
K 6 MG CCC 1 503 602 MG MG . 
L 7 CL CCC 1 504 801 CL CL . 
M 7 CL CCC 1 505 802 CL CL . 
N 7 CL CCC 1 506 803 CL CL . 
O 7 CL CCC 1 507 804 CL CL . 
P 5 TRP DDD 1 501 501 TRP TRP . 
Q 6 MG DDD 1 502 601 MG MG . 
R 7 CL DDD 1 503 801 CL CL . 
S 7 CL DDD 1 504 802 CL CL . 
T 7 CL DDD 1 505 803 CL CL . 
U 7 CL DDD 1 506 804 CL CL . 
V 8 HOH AAA 1 401 6 HOH HOH . 
V 8 HOH AAA 2 402 19 HOH HOH . 
W 8 HOH BBB 1 401 5 HOH HOH . 
W 8 HOH BBB 2 402 81 HOH HOH . 
X 8 HOH CCC 1 601 73 HOH HOH . 
X 8 HOH CCC 2 602 17 HOH HOH . 
X 8 HOH CCC 3 603 54 HOH HOH . 
X 8 HOH CCC 4 604 30 HOH HOH . 
X 8 HOH CCC 5 605 22 HOH HOH . 
X 8 HOH CCC 6 606 1 HOH HOH . 
X 8 HOH CCC 7 607 15 HOH HOH . 
X 8 HOH CCC 8 608 50 HOH HOH . 
X 8 HOH CCC 9 609 14 HOH HOH . 
X 8 HOH CCC 10 610 24 HOH HOH . 
X 8 HOH CCC 11 611 26 HOH HOH . 
X 8 HOH CCC 12 612 25 HOH HOH . 
X 8 HOH CCC 13 613 62 HOH HOH . 
X 8 HOH CCC 14 614 2 HOH HOH . 
X 8 HOH CCC 15 615 74 HOH HOH . 
X 8 HOH CCC 16 616 20 HOH HOH . 
X 8 HOH CCC 17 617 35 HOH HOH . 
X 8 HOH CCC 18 618 32 HOH HOH . 
X 8 HOH CCC 19 619 57 HOH HOH . 
X 8 HOH CCC 20 620 13 HOH HOH . 
X 8 HOH CCC 21 621 34 HOH HOH . 
X 8 HOH CCC 22 622 37 HOH HOH . 
X 8 HOH CCC 23 623 58 HOH HOH . 
X 8 HOH CCC 24 624 67 HOH HOH . 
X 8 HOH CCC 25 625 59 HOH HOH . 
X 8 HOH CCC 26 626 66 HOH HOH . 
X 8 HOH CCC 27 627 88 HOH HOH . 
X 8 HOH CCC 28 628 72 HOH HOH . 
X 8 HOH CCC 29 629 53 HOH HOH . 
X 8 HOH CCC 30 630 42 HOH HOH . 
X 8 HOH CCC 31 631 76 HOH HOH . 
X 8 HOH CCC 32 632 55 HOH HOH . 
X 8 HOH CCC 33 633 69 HOH HOH . 
X 8 HOH CCC 34 634 56 HOH HOH . 
X 8 HOH CCC 35 635 77 HOH HOH . 
Y 8 HOH DDD 1 601 47 HOH HOH . 
Y 8 HOH DDD 2 602 10 HOH HOH . 
Y 8 HOH DDD 3 603 21 HOH HOH . 
Y 8 HOH DDD 4 604 70 HOH HOH . 
Y 8 HOH DDD 5 605 61 HOH HOH . 
Y 8 HOH DDD 6 606 4 HOH HOH . 
Y 8 HOH DDD 7 607 68 HOH HOH . 
Y 8 HOH DDD 8 608 9 HOH HOH . 
Y 8 HOH DDD 9 609 52 HOH HOH . 
Y 8 HOH DDD 10 610 3 HOH HOH . 
Y 8 HOH DDD 11 611 60 HOH HOH . 
Y 8 HOH DDD 12 612 23 HOH HOH . 
Y 8 HOH DDD 13 613 27 HOH HOH . 
Y 8 HOH DDD 14 614 28 HOH HOH . 
Y 8 HOH DDD 15 615 11 HOH HOH . 
Y 8 HOH DDD 16 616 92 HOH HOH . 
Y 8 HOH DDD 17 617 39 HOH HOH . 
Y 8 HOH DDD 18 618 51 HOH HOH . 
Y 8 HOH DDD 19 619 48 HOH HOH . 
Y 8 HOH DDD 20 620 29 HOH HOH . 
Y 8 HOH DDD 21 621 18 HOH HOH . 
Y 8 HOH DDD 22 622 43 HOH HOH . 
Y 8 HOH DDD 23 623 44 HOH HOH . 
Y 8 HOH DDD 24 624 45 HOH HOH . 
Y 8 HOH DDD 25 625 75 HOH HOH . 
Y 8 HOH DDD 26 626 71 HOH HOH . 
Y 8 HOH DDD 27 627 49 HOH HOH . 
Y 8 HOH DDD 28 628 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -36.404 -4.374 48.058 1 80.74 ? C1 GOL 303 AAA 1 
HETATM 2 O O1 GOL . . . G 4 -35.231 -4.467 47.253 1 70.91 ? O1 GOL 303 AAA 1 
HETATM 3 C C2 GOL . . . G 4 -36.48 -3.031 48.754 1 88.02 ? C2 GOL 303 AAA 1 
HETATM 4 O O2 GOL . . . G 4 -37.187 -3.141 49.99 1 88.51 ? O2 GOL 303 AAA 1 
HETATM 5 C C3 GOL . . . G 4 -37.104 -1.953 47.886 1 85.91 ? C3 GOL 303 AAA 1 
HETATM 6 O O3 GOL . . . G 4 -37.188 -0.7 48.564 1 78.45 ? O3 GOL 303 AAA 1 
HETATM 7 H H11 GOL . . . G 4 -36.405 -5.088 48.727 1 79.85 ? H11 GOL 303 AAA 1 
HETATM 8 H H12 GOL . . . G 4 -37.201 -4.488 47.485 1 79.93 ? H12 GOL 303 AAA 1 
HETATM 9 H HO1 GOL . . . G 4 -35.206 -5.197 46.874 0 68.5 ? HO1 GOL 303 AAA 1 
HETATM 10 H H2 GOL . . . G 4 -35.568 -2.757 48.959 1 85.99 ? H2 GOL 303 AAA 1 
HETATM 11 H HO2 GOL . . . G 4 -37.809 -2.558 49.993 0 79.78 ? HO2 GOL 303 AAA 1 
HETATM 12 H H31 GOL . . . G 4 -38.012 -2.239 47.619 1 84.56 ? H31 GOL 303 AAA 1 
HETATM 13 H H32 GOL . . . G 4 -36.562 -1.843 47.067 1 84.57 ? H32 GOL 303 AAA 1 
HETATM 14 H HO3 GOL . . . G 4 -37.614 -0.814 49.287 1 80.69 ? HO3 GOL 303 AAA 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#