data_8RP6 # _model_server_result.job_id zjb1qNPC7weO-rpwco1-RQ _model_server_result.datetime_utc '2025-02-03 15:57:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 8RP6 # _exptl.entry_id 8RP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RP6 _cell.length_a 79.505 _cell.length_b 108.326 _cell.length_c 179.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,V 1 1 D,P,Q,R,S,T,U,Y 1 2 B,C,H,I,J,K,L,M,N,O,W,X 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -79.505 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 81 AAA CYS 79 1_555 E ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A ND1 HIS 130 AAA HIS 128 1_555 E ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A NE2 HIS 170 AAA HIS 168 1_555 E ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc4 E ZN ZN . AAA ZN 301 1_555 V O HOH . AAA HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 B SG CYS 81 BBB CYS 79 1_555 H ZN ZN . BBB ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 B ND1 HIS 130 BBB HIS 128 1_555 H ZN ZN . BBB ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 B NE2 HIS 170 BBB HIS 168 1_555 H ZN ZN . BBB ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 H ZN ZN . BBB ZN 301 1_555 W O HOH . BBB HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc9 J MG MG . CCC MG 502 1_555 X O HOH . CCC HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc10 K MG MG . CCC MG 503 1_555 X O HOH . CCC HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc11 K MG MG . CCC MG 503 1_555 Y O HOH . DDD HOH 606 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc12 K MG MG . CCC MG 503 1_555 Y O HOH . DDD HOH 610 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc13 D OE1 GLU 440 DDD GLU 439 1_555 Q MG MG . DDD MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 319 n n N H TRP sing 320 n n N H2 TRP sing 321 n n CA C TRP sing 322 n n CA CB TRP sing 323 n n CA HA TRP sing 324 n n C O TRP doub 325 n n C OXT TRP sing 326 n n CB CG TRP sing 327 n n CB HB2 TRP sing 328 n n CB HB3 TRP sing 329 n n CG CD1 TRP doub 330 n y CG CD2 TRP sing 331 n y CD1 NE1 TRP sing 332 n y CD1 HD1 TRP sing 333 n n CD2 CE2 TRP doub 334 n y CD2 CE3 TRP sing 335 n y NE1 CE2 TRP sing 336 n y NE1 HE1 TRP sing 337 n n CE2 CZ2 TRP sing 338 n y CE3 CZ3 TRP doub 339 n y CE3 HE3 TRP sing 340 n n CZ2 CH2 TRP doub 341 n y CZ2 HZ2 TRP sing 342 n n CZ3 CH2 TRP sing 343 n y CZ3 HZ3 TRP sing 344 n n CH2 HH2 TRP sing 345 n n OXT HXT TRP sing 346 n n # _atom_sites.entry_id 8RP6 _atom_sites.fract_transf_matrix[1][1] 0.012578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN AAA 1 301 301 ZN ZN . F 4 GOL AAA 1 302 1001 GOL GOL . G 4 GOL AAA 1 303 1002 GOL GOL . H 3 ZN BBB 1 301 301 ZN ZN . I 5 TRP CCC 1 501 501 TRP TRP . J 6 MG CCC 1 502 601 MG MG . K 6 MG CCC 1 503 602 MG MG . L 7 CL CCC 1 504 801 CL CL . M 7 CL CCC 1 505 802 CL CL . N 7 CL CCC 1 506 803 CL CL . O 7 CL CCC 1 507 804 CL CL . P 5 TRP DDD 1 501 501 TRP TRP . Q 6 MG DDD 1 502 601 MG MG . R 7 CL DDD 1 503 801 CL CL . S 7 CL DDD 1 504 802 CL CL . T 7 CL DDD 1 505 803 CL CL . U 7 CL DDD 1 506 804 CL CL . V 8 HOH AAA 1 401 6 HOH HOH . V 8 HOH AAA 2 402 19 HOH HOH . W 8 HOH BBB 1 401 5 HOH HOH . W 8 HOH BBB 2 402 81 HOH HOH . X 8 HOH CCC 1 601 73 HOH HOH . X 8 HOH CCC 2 602 17 HOH HOH . X 8 HOH CCC 3 603 54 HOH HOH . X 8 HOH CCC 4 604 30 HOH HOH . X 8 HOH CCC 5 605 22 HOH HOH . X 8 HOH CCC 6 606 1 HOH HOH . X 8 HOH CCC 7 607 15 HOH HOH . X 8 HOH CCC 8 608 50 HOH HOH . X 8 HOH CCC 9 609 14 HOH HOH . X 8 HOH CCC 10 610 24 HOH HOH . X 8 HOH CCC 11 611 26 HOH HOH . X 8 HOH CCC 12 612 25 HOH HOH . X 8 HOH CCC 13 613 62 HOH HOH . X 8 HOH CCC 14 614 2 HOH HOH . X 8 HOH CCC 15 615 74 HOH HOH . X 8 HOH CCC 16 616 20 HOH HOH . X 8 HOH CCC 17 617 35 HOH HOH . X 8 HOH CCC 18 618 32 HOH HOH . X 8 HOH CCC 19 619 57 HOH HOH . X 8 HOH CCC 20 620 13 HOH HOH . X 8 HOH CCC 21 621 34 HOH HOH . X 8 HOH CCC 22 622 37 HOH HOH . X 8 HOH CCC 23 623 58 HOH HOH . X 8 HOH CCC 24 624 67 HOH HOH . X 8 HOH CCC 25 625 59 HOH HOH . X 8 HOH CCC 26 626 66 HOH HOH . X 8 HOH CCC 27 627 88 HOH HOH . X 8 HOH CCC 28 628 72 HOH HOH . X 8 HOH CCC 29 629 53 HOH HOH . X 8 HOH CCC 30 630 42 HOH HOH . X 8 HOH CCC 31 631 76 HOH HOH . X 8 HOH CCC 32 632 55 HOH HOH . X 8 HOH CCC 33 633 69 HOH HOH . X 8 HOH CCC 34 634 56 HOH HOH . X 8 HOH CCC 35 635 77 HOH HOH . Y 8 HOH DDD 1 601 47 HOH HOH . Y 8 HOH DDD 2 602 10 HOH HOH . Y 8 HOH DDD 3 603 21 HOH HOH . Y 8 HOH DDD 4 604 70 HOH HOH . Y 8 HOH DDD 5 605 61 HOH HOH . Y 8 HOH DDD 6 606 4 HOH HOH . Y 8 HOH DDD 7 607 68 HOH HOH . Y 8 HOH DDD 8 608 9 HOH HOH . Y 8 HOH DDD 9 609 52 HOH HOH . Y 8 HOH DDD 10 610 3 HOH HOH . Y 8 HOH DDD 11 611 60 HOH HOH . Y 8 HOH DDD 12 612 23 HOH HOH . Y 8 HOH DDD 13 613 27 HOH HOH . Y 8 HOH DDD 14 614 28 HOH HOH . Y 8 HOH DDD 15 615 11 HOH HOH . Y 8 HOH DDD 16 616 92 HOH HOH . Y 8 HOH DDD 17 617 39 HOH HOH . Y 8 HOH DDD 18 618 51 HOH HOH . Y 8 HOH DDD 19 619 48 HOH HOH . Y 8 HOH DDD 20 620 29 HOH HOH . Y 8 HOH DDD 21 621 18 HOH HOH . Y 8 HOH DDD 22 622 43 HOH HOH . Y 8 HOH DDD 23 623 44 HOH HOH . Y 8 HOH DDD 24 624 45 HOH HOH . Y 8 HOH DDD 25 625 75 HOH HOH . Y 8 HOH DDD 26 626 71 HOH HOH . Y 8 HOH DDD 27 627 49 HOH HOH . Y 8 HOH DDD 28 628 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . I 5 -39.191 7.747 28.244 1 44.09 ? N TRP 501 CCC 1 HETATM 2 C CA TRP . . . I 5 -38.876 9.156 27.824 1 43.28 ? CA TRP 501 CCC 1 HETATM 3 C C TRP . . . I 5 -39.271 10.113 28.942 1 45.01 ? C TRP 501 CCC 1 HETATM 4 O O TRP . . . I 5 -38.949 11.279 28.817 1 46.66 ? O TRP 501 CCC 1 HETATM 5 C CB TRP . . . I 5 -39.589 9.543 26.515 1 42.18 ? CB TRP 501 CCC 1 HETATM 6 C CG TRP . . . I 5 -39.415 8.557 25.401 1 37.62 ? CG TRP 501 CCC 1 HETATM 7 C CD1 TRP . . . I 5 -40.205 7.479 25.135 1 35.89 ? CD1 TRP 501 CCC 1 HETATM 8 C CD2 TRP . . . I 5 -38.382 8.564 24.405 1 36.11 ? CD2 TRP 501 CCC 1 HETATM 9 N NE1 TRP . . . I 5 -39.73 6.809 24.045 1 36.82 ? NE1 TRP 501 CCC 1 HETATM 10 C CE2 TRP . . . I 5 -38.613 7.449 23.576 1 36.08 ? CE2 TRP 501 CCC 1 HETATM 11 C CE3 TRP . . . I 5 -37.282 9.397 24.137 1 38.59 ? CE3 TRP 501 CCC 1 HETATM 12 C CZ2 TRP . . . I 5 -37.78 7.145 22.499 1 34.79 ? CZ2 TRP 501 CCC 1 HETATM 13 C CZ3 TRP . . . I 5 -36.45 9.091 23.077 1 34.82 ? CZ3 TRP 501 CCC 1 HETATM 14 C CH2 TRP . . . I 5 -36.7 7.975 22.277 1 34.36 ? CH2 TRP 501 CCC 1 HETATM 15 O OXT TRP . . . I 5 -39.916 9.741 29.926 1 53.95 ? OXT TRP 501 CCC 1 HETATM 16 H H1 TRP . . . I 5 -40.043 7.535 28 1 43.81 ? H1 TRP 501 CCC 1 HETATM 17 H H2 TRP . . . I 5 -39.104 7.664 29.198 1 43.83 ? H2 TRP 501 CCC 1 HETATM 18 H H3 TRP . . . I 5 -38.576 7.144 27.817 1 43.83 ? H3 TRP 501 CCC 1 HETATM 19 H HA TRP . . . I 5 -37.904 9.222 27.675 1 43.54 ? HA TRP 501 CCC 1 HETATM 20 H HB2 TRP . . . I 5 -40.544 9.645 26.704 1 41.3 ? HB2 TRP 501 CCC 1 HETATM 21 H HB3 TRP . . . I 5 -39.248 10.414 26.226 1 41.31 ? HB3 TRP 501 CCC 1 HETATM 22 H HD1 TRP . . . I 5 -40.969 7.228 25.629 1 36.48 ? HD1 TRP 501 CCC 1 HETATM 23 H HE1 TRP . . . I 5 -40.082 6.088 23.708 1 36.45 ? HE1 TRP 501 CCC 1 HETATM 24 H HE3 TRP . . . I 5 -37.103 10.142 24.688 1 36.99 ? HE3 TRP 501 CCC 1 HETATM 25 H HZ2 TRP . . . I 5 -37.945 6.396 21.952 1 35.19 ? HZ2 TRP 501 CCC 1 HETATM 26 H HZ3 TRP . . . I 5 -35.71 9.645 22.888 1 35.68 ? HZ3 TRP 501 CCC 1 HETATM 27 H HH2 TRP . . . I 5 -36.133 7.799 21.548 1 34.83 ? HH2 TRP 501 CCC 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #