data_8RPA # _model_server_result.job_id mSE0bG0hvcJ4xZrfddzVeg _model_server_result.datetime_utc '2025-02-22 22:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8RPA # _exptl.entry_id 8RPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RPA _cell.length_a 51.049 _cell.length_b 117.49 _cell.length_c 165.958 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 337 n n C1 C2 PEG sing 338 n n C1 H11 PEG sing 339 n n C1 H12 PEG sing 340 n n O1 HO1 PEG sing 341 n n C2 O2 PEG sing 342 n n C2 H21 PEG sing 343 n n C2 H22 PEG sing 344 n n O2 C3 PEG sing 345 n n C3 C4 PEG sing 346 n n C3 H31 PEG sing 347 n n C3 H32 PEG sing 348 n n C4 O4 PEG sing 349 n n C4 H41 PEG sing 350 n n C4 H42 PEG sing 351 n n O4 HO4 PEG sing 352 n n # _atom_sites.entry_id 8RPA _atom_sites.fract_transf_matrix[1][1] 0.019589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AP5 A 1 401 401 AP5 AP5 . C 3 EDO A 1 402 403 EDO EDO . D 4 PEG A 1 403 404 PEG PEG . E 4 PEG A 1 404 405 PEG PEG . F 4 PEG A 1 405 406 PEG PEG . G 5 CL A 1 406 1 CL CL . H 5 CL A 1 407 2 CL CL . I 6 HOH A 1 501 16 HOH HOH . I 6 HOH A 2 502 34 HOH HOH . I 6 HOH A 3 503 12 HOH HOH . I 6 HOH A 4 504 82 HOH HOH . I 6 HOH A 5 505 76 HOH HOH . I 6 HOH A 6 506 97 HOH HOH . I 6 HOH A 7 507 30 HOH HOH . I 6 HOH A 8 508 33 HOH HOH . I 6 HOH A 9 509 8 HOH HOH . I 6 HOH A 10 510 89 HOH HOH . I 6 HOH A 11 511 3 HOH HOH . I 6 HOH A 12 512 32 HOH HOH . I 6 HOH A 13 513 5 HOH HOH . I 6 HOH A 14 514 88 HOH HOH . I 6 HOH A 15 515 36 HOH HOH . I 6 HOH A 16 516 95 HOH HOH . I 6 HOH A 17 517 28 HOH HOH . I 6 HOH A 18 518 24 HOH HOH . I 6 HOH A 19 519 14 HOH HOH . I 6 HOH A 20 520 7 HOH HOH . I 6 HOH A 21 521 9 HOH HOH . I 6 HOH A 22 522 53 HOH HOH . I 6 HOH A 23 523 54 HOH HOH . I 6 HOH A 24 524 26 HOH HOH . I 6 HOH A 25 525 86 HOH HOH . I 6 HOH A 26 526 48 HOH HOH . I 6 HOH A 27 527 102 HOH HOH . I 6 HOH A 28 528 39 HOH HOH . I 6 HOH A 29 529 15 HOH HOH . I 6 HOH A 30 530 11 HOH HOH . I 6 HOH A 31 531 37 HOH HOH . I 6 HOH A 32 532 62 HOH HOH . I 6 HOH A 33 533 108 HOH HOH . I 6 HOH A 34 534 106 HOH HOH . I 6 HOH A 35 535 55 HOH HOH . I 6 HOH A 36 536 41 HOH HOH . I 6 HOH A 37 537 66 HOH HOH . I 6 HOH A 38 538 25 HOH HOH . I 6 HOH A 39 539 70 HOH HOH . I 6 HOH A 40 540 61 HOH HOH . I 6 HOH A 41 541 6 HOH HOH . I 6 HOH A 42 542 40 HOH HOH . I 6 HOH A 43 543 57 HOH HOH . I 6 HOH A 44 544 45 HOH HOH . I 6 HOH A 45 545 80 HOH HOH . I 6 HOH A 46 546 51 HOH HOH . I 6 HOH A 47 547 31 HOH HOH . I 6 HOH A 48 548 52 HOH HOH . I 6 HOH A 49 549 4 HOH HOH . I 6 HOH A 50 550 10 HOH HOH . I 6 HOH A 51 551 44 HOH HOH . I 6 HOH A 52 552 47 HOH HOH . I 6 HOH A 53 553 79 HOH HOH . I 6 HOH A 54 554 27 HOH HOH . I 6 HOH A 55 555 19 HOH HOH . I 6 HOH A 56 556 29 HOH HOH . I 6 HOH A 57 557 67 HOH HOH . I 6 HOH A 58 558 81 HOH HOH . I 6 HOH A 59 559 104 HOH HOH . I 6 HOH A 60 560 43 HOH HOH . I 6 HOH A 61 561 111 HOH HOH . I 6 HOH A 62 562 94 HOH HOH . I 6 HOH A 63 563 50 HOH HOH . I 6 HOH A 64 564 110 HOH HOH . I 6 HOH A 65 565 35 HOH HOH . I 6 HOH A 66 566 17 HOH HOH . I 6 HOH A 67 567 58 HOH HOH . I 6 HOH A 68 568 115 HOH HOH . I 6 HOH A 69 569 109 HOH HOH . I 6 HOH A 70 570 59 HOH HOH . I 6 HOH A 71 571 87 HOH HOH . I 6 HOH A 72 572 20 HOH HOH . I 6 HOH A 73 573 49 HOH HOH . I 6 HOH A 74 574 2 HOH HOH . I 6 HOH A 75 575 42 HOH HOH . I 6 HOH A 76 576 74 HOH HOH . I 6 HOH A 77 577 84 HOH HOH . I 6 HOH A 78 578 91 HOH HOH . I 6 HOH A 79 579 114 HOH HOH . I 6 HOH A 80 580 73 HOH HOH . I 6 HOH A 81 581 21 HOH HOH . I 6 HOH A 82 582 85 HOH HOH . I 6 HOH A 83 583 23 HOH HOH . I 6 HOH A 84 584 71 HOH HOH . I 6 HOH A 85 585 92 HOH HOH . I 6 HOH A 86 586 105 HOH HOH . I 6 HOH A 87 587 101 HOH HOH . I 6 HOH A 88 588 103 HOH HOH . I 6 HOH A 89 589 98 HOH HOH . I 6 HOH A 90 590 107 HOH HOH . I 6 HOH A 91 591 93 HOH HOH . I 6 HOH A 92 592 77 HOH HOH . I 6 HOH A 93 593 99 HOH HOH . I 6 HOH A 94 594 78 HOH HOH . I 6 HOH A 95 595 113 HOH HOH . I 6 HOH A 96 596 112 HOH HOH . I 6 HOH A 97 597 72 HOH HOH . I 6 HOH A 98 598 22 HOH HOH . I 6 HOH A 99 599 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 4 3.255 9.604 -43.57 1 52.12 ? C1 PEG 405 A 1 HETATM 2 O O1 PEG . . . F 4 2.26 9.308 -44.541 1 52.3 ? O1 PEG 405 A 1 HETATM 3 C C2 PEG . . . F 4 3.379 11.08 -43.333 1 51.84 ? C2 PEG 405 A 1 HETATM 4 O O2 PEG . . . F 4 4.333 11.643 -44.238 1 51.62 ? O2 PEG 405 A 1 HETATM 5 C C3 PEG . . . F 4 3.783 12.251 -45.405 1 51.58 ? C3 PEG 405 A 1 HETATM 6 C C4 PEG . . . F 4 4.852 13 -46.145 1 51.47 ? C4 PEG 405 A 1 HETATM 7 O O4 PEG . . . F 4 4.384 13.468 -47.401 1 51.4 ? O4 PEG 405 A 1 HETATM 8 H H11 PEG . . . F 4 4.204 9.19 -43.919 1 52.13 ? H11 PEG 405 A 1 HETATM 9 H H12 PEG . . . F 4 2.961 9.102 -42.645 1 52.12 ? H12 PEG 405 A 1 HETATM 10 H HO1 PEG . . . F 4 2.148 8.342 -44.543 1 52.3 ? HO1 PEG 405 A 1 HETATM 11 H H21 PEG . . . F 4 3.76 11.238 -42.32 1 51.84 ? H21 PEG 405 A 1 HETATM 12 H H22 PEG . . . F 4 2.397 11.555 -43.416 1 51.84 ? H22 PEG 405 A 1 HETATM 13 H H31 PEG . . . F 4 2.982 12.94 -45.124 1 51.58 ? H31 PEG 405 A 1 HETATM 14 H H32 PEG . . . F 4 3.381 11.463 -46.048 1 51.58 ? H32 PEG 405 A 1 HETATM 15 H H41 PEG . . . F 4 5.702 12.342 -46.342 1 51.47 ? H41 PEG 405 A 1 HETATM 16 H H42 PEG . . . F 4 5.191 13.864 -45.57 1 51.47 ? H42 PEG 405 A 1 HETATM 17 H HO4 PEG . . . F 4 5.083 14.034 -47.767 1 51.39 ? HO4 PEG 405 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #