data_8RPK
#
_model_server_result.job_id            n2O6C5UwnLSpzouUOpImkA 
_model_server_result.datetime_utc      '2024-10-11 03:25:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    8RPK 
#
_exptl.entry_id    8RPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8RPK 
_cell.length_a            161.352 
_cell.length_b            161.352 
_cell.length_c            814.182 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,J 1 1 
A,E,F,J 1 2 
A,E,F,J 1 3 
B,C,D,G,H,I,K,L,M 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -80.676 -139.734931 0 
3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 80.676 -139.734931 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 485 A GLU 475 1_555 A N NEP 486 A NEP 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C NEP 486 A NEP 476 1_555 A N GLY 487 A GLY 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale3 B C GLU 485 B GLU 475 1_555 B N NEP 486 B NEP 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C NEP 486 B NEP 476 1_555 B N GLY 487 B GLY 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 C C GLU 485 C GLU 475 1_555 C N NEP 486 C NEP 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale6 C C NEP 486 C NEP 476 1_555 C N GLY 487 C GLY 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 D C GLU 485 D GLU 475 1_555 D N NEP 486 D NEP 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale8 D C NEP 486 D NEP 476 1_555 D N GLY 487 D GLY 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD1 ASP 90 A ASP 80 1_555 F K K . A K 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.389 ? 
metalc ? metalc2 A OD2 ASP 206 A ASP 196 1_555 F K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc3 A O VAL 562 A VAL 552 1_555 E MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc4 A O HIS 564 A HIS 554 1_555 E MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc5 A O VAL 567 A VAL 557 1_555 E MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc6 E MG MG . A MG 701 1_555 J O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc7 B O VAL 562 B VAL 552 1_555 G MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc8 B O HIS 564 B HIS 554 1_555 G MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc9 B O VAL 567 B VAL 557 1_555 G MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
metalc ? metalc10 G MG MG . B MG 701 1_555 K O HOH . B HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc11 C O VAL 562 C VAL 552 1_555 H MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc12 C O HIS 564 C HIS 554 1_555 H MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc13 C O VAL 567 C VAL 557 1_555 H MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc14 H MG MG . C MG 701 1_555 L O HOH . C HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc15 H MG MG . C MG 701 1_555 L O HOH . C HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc16 H MG MG . C MG 701 1_555 L O HOH . C HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc17 D O VAL 562 D VAL 552 1_555 I MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc18 D O HIS 564 D HIS 554 1_555 I MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
metalc ? metalc19 D O VAL 567 D VAL 557 1_555 I MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? 
metalc ? metalc20 I MG MG . D MG 701 1_555 M O HOH . D HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8RPK 
_atom_sites.fract_transf_matrix[1][1]    0.006198 
_atom_sites.fract_transf_matrix[1][2]    0.003578 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007156 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 701 3 MG MG . 
F 3 K A 1 702 1 K K . 
G 2 MG B 1 701 4 MG MG . 
H 2 MG C 1 701 1 MG MG . 
I 2 MG D 1 701 2 MG MG . 
J 4 HOH A 1 801 30 HOH HOH . 
J 4 HOH A 2 802 3 HOH HOH . 
J 4 HOH A 3 803 2 HOH HOH . 
J 4 HOH A 4 804 41 HOH HOH . 
J 4 HOH A 5 805 9 HOH HOH . 
J 4 HOH A 6 806 21 HOH HOH . 
J 4 HOH A 7 807 13 HOH HOH . 
J 4 HOH A 8 808 17 HOH HOH . 
J 4 HOH A 9 809 26 HOH HOH . 
J 4 HOH A 10 810 1 HOH HOH . 
J 4 HOH A 11 811 38 HOH HOH . 
K 4 HOH B 1 801 31 HOH HOH . 
K 4 HOH B 2 802 5 HOH HOH . 
K 4 HOH B 3 803 22 HOH HOH . 
K 4 HOH B 4 804 10 HOH HOH . 
K 4 HOH B 5 805 4 HOH HOH . 
K 4 HOH B 6 806 40 HOH HOH . 
K 4 HOH B 7 807 14 HOH HOH . 
K 4 HOH B 8 808 18 HOH HOH . 
K 4 HOH B 9 809 25 HOH HOH . 
K 4 HOH B 10 810 27 HOH HOH . 
K 4 HOH B 11 811 37 HOH HOH . 
L 4 HOH C 1 801 6 HOH HOH . 
L 4 HOH C 2 802 44 HOH HOH . 
L 4 HOH C 3 803 11 HOH HOH . 
L 4 HOH C 4 804 19 HOH HOH . 
L 4 HOH C 5 805 43 HOH HOH . 
L 4 HOH C 6 806 7 HOH HOH . 
L 4 HOH C 7 807 23 HOH HOH . 
L 4 HOH C 8 808 32 HOH HOH . 
L 4 HOH C 9 809 15 HOH HOH . 
L 4 HOH C 10 810 45 HOH HOH . 
L 4 HOH C 11 811 34 HOH HOH . 
L 4 HOH C 12 812 28 HOH HOH . 
M 4 HOH D 1 801 42 HOH HOH . 
M 4 HOH D 2 802 8 HOH HOH . 
M 4 HOH D 3 803 20 HOH HOH . 
M 4 HOH D 4 804 29 HOH HOH . 
M 4 HOH D 5 805 16 HOH HOH . 
M 4 HOH D 6 806 33 HOH HOH . 
M 4 HOH D 7 807 12 HOH HOH . 
M 4 HOH D 8 808 39 HOH HOH . 
M 4 HOH D 9 809 24 HOH HOH . 
M 4 HOH D 10 810 36 HOH HOH . 
M 4 HOH D 11 811 35 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -43.151 
_atom_site.Cartn_y               -74.868 
_atom_site.Cartn_z               -25.633 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        87 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           701 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#