data_8RPO # _model_server_result.job_id 6iLlt77yuajdsjdW2nwPwg _model_server_result.datetime_utc '2025-07-18 02:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rpo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8RPO # _exptl.entry_id 8RPO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (~{E})-2-cyano-3-(2-dimethylphosphorylphenyl)-~{N}-[[1-[4-(trifluoromethyl)phenyl]cyclopropyl]methyl]prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RPO _cell.length_a 69.748 _cell.length_b 69.748 _cell.length_c 72.827 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id A1H2C _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1H2C _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.819 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H22 F3 N2 O2 P' _chem_comp.formula_weight 446.402 _chem_comp.id A1H2C _chem_comp.mon_nstd_flag . _chem_comp.name (~{E})-2-cyano-3-(2-dimethylphosphorylphenyl)-~{N}-[[1-[4-(trifluoromethyl)phenyl]cyclopropyl]methyl]prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C11 A1H2C doub 1 n n C12 N1 A1H2C sing 2 n n C12 C13 A1H2C sing 3 n n N C10 A1H2C trip 4 n n C11 N1 A1H2C sing 5 n n C11 C9 A1H2C sing 6 n n C14 C13 A1H2C sing 7 n n C14 C15 A1H2C sing 8 n n C10 C9 A1H2C sing 9 n n C13 C15 A1H2C sing 10 n n C13 C16 A1H2C sing 11 n n C9 C8 A1H2C doub 12 e n C21 C16 A1H2C doub 13 n y C21 C20 A1H2C sing 14 n y C16 C17 A1H2C sing 15 n y C8 C7 A1H2C sing 16 n n O P A1H2C doub 17 n n C20 C19 A1H2C doub 18 n y C17 C18 A1H2C doub 19 n y C7 C6 A1H2C sing 20 n y C7 C2 A1H2C doub 21 n y C6 C5 A1H2C doub 22 n y P C2 A1H2C sing 23 n n P C A1H2C sing 24 n n P C1 A1H2C sing 25 n n C2 C3 A1H2C sing 26 n y C19 C18 A1H2C sing 27 n y C19 C22 A1H2C sing 28 n n C5 C4 A1H2C sing 29 n y C3 C4 A1H2C doub 30 n y F C22 A1H2C sing 31 n n C22 F1 A1H2C sing 32 n n C22 F2 A1H2C sing 33 n n C1 H1 A1H2C sing 34 n n C1 H2 A1H2C sing 35 n n C1 H3 A1H2C sing 36 n n C3 H4 A1H2C sing 37 n n C8 H5 A1H2C sing 38 n n C12 H8 A1H2C sing 39 n n C12 H9 A1H2C sing 40 n n C14 H10 A1H2C sing 41 n n C14 H11 A1H2C sing 42 n n C15 H12 A1H2C sing 43 n n C15 H13 A1H2C sing 44 n n C20 H14 A1H2C sing 45 n n C21 H15 A1H2C sing 46 n n C18 H16 A1H2C sing 47 n n C17 H17 A1H2C sing 48 n n N1 H18 A1H2C sing 49 n n C H19 A1H2C sing 50 n n C H20 A1H2C sing 51 n n C H21 A1H2C sing 52 n n C6 H22 A1H2C sing 53 n n C5 H23 A1H2C sing 54 n n C4 H24 A1H2C sing 55 n n # _atom_sites.entry_id 8RPO _atom_sites.fract_transf_matrix[1][1] 0.014337 _atom_sites.fract_transf_matrix[1][2] 0.008278 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H2C A 1 201 201 A1H2C INH . C 3 HOH A 1 301 31 HOH HOH . C 3 HOH A 2 302 33 HOH HOH . C 3 HOH A 3 303 22 HOH HOH . C 3 HOH A 4 304 37 HOH HOH . C 3 HOH A 5 305 32 HOH HOH . C 3 HOH A 6 306 2 HOH HOH . C 3 HOH A 7 307 64 HOH HOH . C 3 HOH A 8 308 15 HOH HOH . C 3 HOH A 9 309 41 HOH HOH . C 3 HOH A 10 310 34 HOH HOH . C 3 HOH A 11 311 51 HOH HOH . C 3 HOH A 12 312 6 HOH HOH . C 3 HOH A 13 313 24 HOH HOH . C 3 HOH A 14 314 4 HOH HOH . C 3 HOH A 15 315 8 HOH HOH . C 3 HOH A 16 316 36 HOH HOH . C 3 HOH A 17 317 11 HOH HOH . C 3 HOH A 18 318 61 HOH HOH . C 3 HOH A 19 319 27 HOH HOH . C 3 HOH A 20 320 46 HOH HOH . C 3 HOH A 21 321 5 HOH HOH . C 3 HOH A 22 322 9 HOH HOH . C 3 HOH A 23 323 10 HOH HOH . C 3 HOH A 24 324 49 HOH HOH . C 3 HOH A 25 325 66 HOH HOH . C 3 HOH A 26 326 30 HOH HOH . C 3 HOH A 27 327 62 HOH HOH . C 3 HOH A 28 328 13 HOH HOH . C 3 HOH A 29 329 48 HOH HOH . C 3 HOH A 30 330 56 HOH HOH . C 3 HOH A 31 331 53 HOH HOH . C 3 HOH A 32 332 25 HOH HOH . C 3 HOH A 33 333 28 HOH HOH . C 3 HOH A 34 334 45 HOH HOH . C 3 HOH A 35 335 43 HOH HOH . C 3 HOH A 36 336 14 HOH HOH . C 3 HOH A 37 337 1 HOH HOH . C 3 HOH A 38 338 57 HOH HOH . C 3 HOH A 39 339 16 HOH HOH . C 3 HOH A 40 340 58 HOH HOH . C 3 HOH A 41 341 7 HOH HOH . C 3 HOH A 42 342 26 HOH HOH . C 3 HOH A 43 343 21 HOH HOH . C 3 HOH A 44 344 12 HOH HOH . C 3 HOH A 45 345 54 HOH HOH . C 3 HOH A 46 346 47 HOH HOH . C 3 HOH A 47 347 3 HOH HOH . C 3 HOH A 48 348 67 HOH HOH . C 3 HOH A 49 349 63 HOH HOH . C 3 HOH A 50 350 42 HOH HOH . C 3 HOH A 51 351 17 HOH HOH . C 3 HOH A 52 352 23 HOH HOH . C 3 HOH A 53 353 55 HOH HOH . C 3 HOH A 54 354 20 HOH HOH . C 3 HOH A 55 355 40 HOH HOH . C 3 HOH A 56 356 44 HOH HOH . C 3 HOH A 57 357 19 HOH HOH . C 3 HOH A 58 358 52 HOH HOH . C 3 HOH A 59 359 39 HOH HOH . C 3 HOH A 60 360 50 HOH HOH . C 3 HOH A 61 361 29 HOH HOH . C 3 HOH A 62 362 38 HOH HOH . C 3 HOH A 63 363 35 HOH HOH . C 3 HOH A 64 364 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1H2C . . . B 2 8.186 34.59 34.438 1 24.71 ? C1 A1H2C 201 A 1 HETATM 2 C C2 A1H2C . . . B 2 10.551 33.408 33.24 1 23.96 ? C2 A1H2C 201 A 1 HETATM 3 C C3 A1H2C . . . B 2 11.709 33.546 34.009 1 23.03 ? C3 A1H2C 201 A 1 HETATM 4 C C7 A1H2C . . . B 2 10.3 32.191 32.569 1 24.89 ? C7 A1H2C 201 A 1 HETATM 5 C C8 A1H2C . . . B 2 9.172 32.024 31.577 1 26.72 ? C8 A1H2C 201 A 1 HETATM 6 C C9 A1H2C . . . B 2 9.568 32.496 30.153 1 28.95 ? C9 A1H2C 201 A 1 HETATM 7 C C10 A1H2C . . . B 2 10.449 31.512 29.502 1 30.34 ? C10 A1H2C 201 A 1 HETATM 8 C C11 A1H2C . . . B 2 8.338 32.709 29.284 1 29.58 ? C11 A1H2C 201 A 1 HETATM 9 C C12 A1H2C . . . B 2 6.333 34.085 28.997 1 28.34 ? C12 A1H2C 201 A 1 HETATM 10 C C13 A1H2C . . . B 2 5.432 34.855 29.967 1 27.67 ? C13 A1H2C 201 A 1 HETATM 11 C C14 A1H2C . . . B 2 4.405 35.782 29.359 1 28.1 ? C14 A1H2C 201 A 1 HETATM 12 C C15 A1H2C . . . B 2 5.613 36.353 30.03 1 28.09 ? C15 A1H2C 201 A 1 HETATM 13 C C16 A1H2C . . . B 2 5.074 34.084 31.237 1 25.7 ? C16 A1H2C 201 A 1 HETATM 14 C C19 A1H2C . . . B 2 4.347 32.635 33.529 1 25.56 ? C19 A1H2C 201 A 1 HETATM 15 C C20 A1H2C . . . B 2 4.66 31.984 32.345 1 24.7 ? C20 A1H2C 201 A 1 HETATM 16 C C21 A1H2C . . . B 2 5.025 32.697 31.222 1 25 ? C21 A1H2C 201 A 1 HETATM 17 C C22 A1H2C . . . B 2 3.933 31.856 34.73 1 27.63 ? C22 A1H2C 201 A 1 HETATM 18 F F2 A1H2C . . . B 2 4.96 31.544 35.527 1 28.06 ? F2 A1H2C 201 A 1 HETATM 19 F F A1H2C . . . B 2 3.32 30.714 34.408 1 28.41 ? F A1H2C 201 A 1 HETATM 20 F F1 A1H2C . . . B 2 3.093 32.519 35.495 1 28.28 ? F1 A1H2C 201 A 1 HETATM 21 C C18 A1H2C . . . B 2 4.409 34.021 33.556 1 25.3 ? C18 A1H2C 201 A 1 HETATM 22 C C17 A1H2C . . . B 2 4.763 34.736 32.424 1 25.53 ? C17 A1H2C 201 A 1 HETATM 23 N N1 A1H2C . . . B 2 7.677 33.851 29.497 1 28.72 ? N1 A1H2C 201 A 1 HETATM 24 O O1 A1H2C . . . B 2 7.995 31.879 28.44 1 30.47 ? O1 A1H2C 201 A 1 HETATM 25 N N A1H2C . . . B 2 11.153 30.745 29.035 1 30.94 ? N A1H2C 201 A 1 HETATM 26 P P A1H2C . . . B 2 9.477 34.864 33.223 1 24.43 ? P A1H2C 201 A 1 HETATM 27 O O A1H2C . . . B 2 8.912 35.196 31.886 1 24.68 ? O A1H2C 201 A 1 HETATM 28 C C A1H2C . . . B 2 10.467 36.226 33.84 1 24.39 ? C A1H2C 201 A 1 HETATM 29 C C6 A1H2C . . . B 2 11.207 31.146 32.749 1 23.88 ? C6 A1H2C 201 A 1 HETATM 30 C C5 A1H2C . . . B 2 12.324 31.291 33.554 1 22.73 ? C5 A1H2C 201 A 1 HETATM 31 C C4 A1H2C . . . B 2 12.582 32.488 34.166 1 22.48 ? C4 A1H2C 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #