data_8RPR # _model_server_result.job_id 9QXYUwMeEwC3248CnDaBzA _model_server_result.datetime_utc '2024-11-02 17:34:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8RPR # _exptl.entry_id 8RPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXO-4-METHYLPENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RPR _cell.length_a 67.031 _cell.length_b 67.031 _cell.length_c 182.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 12 A ALA 12 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc2 A O ILE 15 A ILE 15 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc3 A O GLY 19 A GLY 19 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc4 A OD2 ASP 23 A ASP 23 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc5 A O ALA 64 A ALA 64 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc6 A O HIS 147 A HIS 147 1_555 F MG MG . A MG 405 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc7 A NE2 HIS 244 A HIS 244 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 A O ARG 284 A ARG 284 1_555 E MG MG . A MG 404 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc9 A OH TYR 294 A TYR 294 1_555 G MG MG . A MG 406 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc10 A NE2 HIS 296 A HIS 296 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 B O2 COI . A COI 401 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc12 B O3 COI . A COI 401 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc13 F MG MG . A MG 405 1_555 J O HOH . A HOH 505 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc14 H MG MG . A MG 407 1_555 J O HOH . A HOH 560 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc15 H MG MG . A MG 407 1_555 J O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc16 I ZN ZN . A ZN 408 1_555 J O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc17 I ZN ZN . A ZN 408 1_555 J O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'C6 H10 O3' _chem_comp.formula_weight 130.142 _chem_comp.id COI _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXO-4-METHYLPENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'alpha-ketoisocaproic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 COI doub 70 n n C1 O2 COI sing 71 n n C1 C2 COI sing 72 n n O2 HO2 COI sing 73 n n C2 O3 COI doub 74 n n C2 C3 COI sing 75 n n C3 C4 COI sing 76 n n C3 H31 COI sing 77 n n C3 H32 COI sing 78 n n C4 C5 COI sing 79 n n C4 C6 COI sing 80 n n C4 H4 COI sing 81 n n C5 H51 COI sing 82 n n C5 H52 COI sing 83 n n C5 H53 COI sing 84 n n C6 H61 COI sing 85 n n C6 H62 COI sing 86 n n C6 H63 COI sing 87 n n # _atom_sites.entry_id 8RPR _atom_sites.fract_transf_matrix[1][1] 0.014918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COI A 1 401 1002 COI COI . C 3 CL A 1 402 1004 CL CL . D 4 MG A 1 403 1005 MG MG . E 4 MG A 1 404 1006 MG MG . F 4 MG A 1 405 1007 MG MG . G 4 MG A 1 406 1008 MG MG . H 4 MG A 1 407 1009 MG MG . I 5 ZN A 1 408 1001 ZN ZN . J 6 HOH A 1 501 61 HOH HOH . J 6 HOH A 2 502 6 HOH HOH . J 6 HOH A 3 503 26 HOH HOH . J 6 HOH A 4 504 6 HOH HOH . J 6 HOH A 5 505 1 HOH HOH . J 6 HOH A 6 506 59 HOH HOH . J 6 HOH A 7 507 6 HOH HOH . J 6 HOH A 8 508 25 HOH HOH . J 6 HOH A 9 509 27 HOH HOH . J 6 HOH A 10 510 62 HOH HOH . J 6 HOH A 11 511 46 HOH HOH . J 6 HOH A 12 512 54 HOH HOH . J 6 HOH A 13 513 23 HOH HOH . J 6 HOH A 14 514 11 HOH HOH . J 6 HOH A 15 515 51 HOH HOH . J 6 HOH A 16 516 4 HOH HOH . J 6 HOH A 17 517 2 HOH HOH . J 6 HOH A 18 518 47 HOH HOH . J 6 HOH A 19 519 16 HOH HOH . J 6 HOH A 20 520 2 HOH HOH . J 6 HOH A 21 521 69 HOH HOH . J 6 HOH A 22 522 1 HOH HOH . J 6 HOH A 23 523 19 HOH HOH . J 6 HOH A 24 524 25 HOH HOH . J 6 HOH A 25 525 7 HOH HOH . J 6 HOH A 26 526 49 HOH HOH . J 6 HOH A 27 527 15 HOH HOH . J 6 HOH A 28 528 32 HOH HOH . J 6 HOH A 29 529 37 HOH HOH . J 6 HOH A 30 530 2 HOH HOH . J 6 HOH A 31 531 57 HOH HOH . J 6 HOH A 32 532 17 HOH HOH . J 6 HOH A 33 533 7 HOH HOH . J 6 HOH A 34 534 15 HOH HOH . J 6 HOH A 35 535 14 HOH HOH . J 6 HOH A 36 536 48 HOH HOH . J 6 HOH A 37 537 41 HOH HOH . J 6 HOH A 38 538 13 HOH HOH . J 6 HOH A 39 539 2 HOH HOH . J 6 HOH A 40 540 22 HOH HOH . J 6 HOH A 41 541 42 HOH HOH . J 6 HOH A 42 542 53 HOH HOH . J 6 HOH A 43 543 9 HOH HOH . J 6 HOH A 44 544 16 HOH HOH . J 6 HOH A 45 545 11 HOH HOH . J 6 HOH A 46 546 43 HOH HOH . J 6 HOH A 47 547 65 HOH HOH . J 6 HOH A 48 548 45 HOH HOH . J 6 HOH A 49 549 10 HOH HOH . J 6 HOH A 50 550 26 HOH HOH . J 6 HOH A 51 551 33 HOH HOH . J 6 HOH A 52 552 44 HOH HOH . J 6 HOH A 53 553 57 HOH HOH . J 6 HOH A 54 554 27 HOH HOH . J 6 HOH A 55 555 8 HOH HOH . J 6 HOH A 56 556 40 HOH HOH . J 6 HOH A 57 557 35 HOH HOH . J 6 HOH A 58 558 15 HOH HOH . J 6 HOH A 59 559 22 HOH HOH . J 6 HOH A 60 560 10 HOH HOH . J 6 HOH A 61 561 45 HOH HOH . J 6 HOH A 62 562 31 HOH HOH . J 6 HOH A 63 563 68 HOH HOH . J 6 HOH A 64 564 5 HOH HOH . J 6 HOH A 65 565 4 HOH HOH . J 6 HOH A 66 566 36 HOH HOH . J 6 HOH A 67 567 10 HOH HOH . J 6 HOH A 68 568 18 HOH HOH . J 6 HOH A 69 569 11 HOH HOH . J 6 HOH A 70 570 7 HOH HOH . J 6 HOH A 71 571 46 HOH HOH . J 6 HOH A 72 572 6 HOH HOH . J 6 HOH A 73 573 3 HOH HOH . J 6 HOH A 74 574 64 HOH HOH . J 6 HOH A 75 575 70 HOH HOH . J 6 HOH A 76 576 39 HOH HOH . J 6 HOH A 77 577 43 HOH HOH . J 6 HOH A 78 578 5 HOH HOH . J 6 HOH A 79 579 28 HOH HOH . J 6 HOH A 80 580 20 HOH HOH . J 6 HOH A 81 581 66 HOH HOH . J 6 HOH A 82 582 33 HOH HOH . J 6 HOH A 83 583 47 HOH HOH . J 6 HOH A 84 584 14 HOH HOH . J 6 HOH A 85 585 53 HOH HOH . J 6 HOH A 86 586 1 HOH HOH . J 6 HOH A 87 587 46 HOH HOH . J 6 HOH A 88 588 1 HOH HOH . J 6 HOH A 89 589 43 HOH HOH . J 6 HOH A 90 590 10 HOH HOH . J 6 HOH A 91 591 50 HOH HOH . J 6 HOH A 92 592 1 HOH HOH . J 6 HOH A 93 593 29 HOH HOH . J 6 HOH A 94 594 54 HOH HOH . J 6 HOH A 95 595 45 HOH HOH . J 6 HOH A 96 596 31 HOH HOH . J 6 HOH A 97 597 18 HOH HOH . J 6 HOH A 98 598 58 HOH HOH . J 6 HOH A 99 599 52 HOH HOH . J 6 HOH A 100 600 65 HOH HOH . J 6 HOH A 101 601 70 HOH HOH . J 6 HOH A 102 602 56 HOH HOH . J 6 HOH A 103 603 63 HOH HOH . J 6 HOH A 104 604 67 HOH HOH . J 6 HOH A 105 605 55 HOH HOH . J 6 HOH A 106 606 38 HOH HOH . J 6 HOH A 107 607 74 HOH HOH . J 6 HOH A 108 608 61 HOH HOH . J 6 HOH A 109 609 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 COI . . . B 2 0.729 -18.003 -8.56 1 52.92 ? C1 COI 401 A 1 HETATM 2 O O1 COI . . . B 2 0.176 -17.418 -7.588 1 53.18 ? O1 COI 401 A 1 HETATM 3 O O2 COI . . . B 2 1.429 -17.346 -9.374 1 49.96 ? O2 COI 401 A 1 HETATM 4 C C2 COI . . . B 2 0.567 -19.511 -8.746 1 55.59 ? C2 COI 401 A 1 HETATM 5 O O3 COI . . . B 2 0.812 -19.996 -9.803 1 50.64 ? O3 COI 401 A 1 HETATM 6 C C3 COI . . . B 2 0.148 -20.378 -7.552 1 54.05 ? C3 COI 401 A 1 HETATM 7 C C4 COI . . . B 2 -1.303 -20.874 -7.589 1 55.94 ? C4 COI 401 A 1 HETATM 8 C C5 COI . . . B 2 -1.336 -22.301 -7.05 1 54.8 ? C5 COI 401 A 1 HETATM 9 C C6 COI . . . B 2 -1.925 -20.864 -8.985 1 51.26 ? C6 COI 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #