data_8RQ8
#
_model_server_result.job_id            V9B5SALtdlMXJH0n_D5PpQ 
_model_server_result.datetime_utc      '2024-12-16 19:45:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rq8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    8RQ8 
#
_exptl.entry_id    8RQ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              567.61 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Mezigdomide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RQ8 
_cell.length_a            51.046 
_cell.length_b            51.046 
_cell.length_c            267.677 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RQ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 226 A CYS 323 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 A SG CYS 229 A CYS 326 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc3 A SG CYS 294 A CYS 391 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc4 A SG CYS 297 A CYS 394 1_555 B ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
#
_chem_comp.formula           'C32 H30 F N5 O4' 
_chem_comp.formula_weight    567.61 
_chem_comp.id                QFC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Mezigdomide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 QFC sing 277 n n 
C8 N1 QFC sing 278 n n 
C7 N1 QFC sing 279 n n 
C7 C6 QFC sing 280 n n 
C9 C10 QFC doub 281 n y 
C9 C28 QFC sing 282 n y 
C10 C11 QFC sing 283 n y 
C28 C27 QFC doub 284 n y 
C11 C12 QFC doub 285 n y 
C27 C12 QFC sing 286 n y 
C12 C13 QFC sing 287 n n 
N1 C29 QFC sing 288 n n 
C6 N QFC sing 289 n n 
C13 O QFC sing 290 n n 
C29 C30 QFC sing 291 n n 
N C5 QFC sing 292 n n 
N C30 QFC sing 293 n n 
C4 C5 QFC doub 294 n y 
C4 C3 QFC sing 295 n y 
O C14 QFC sing 296 n n 
C5 C QFC sing 297 n y 
C15 C14 QFC doub 298 n y 
C15 C16 QFC sing 299 n y 
C3 C2 QFC doub 300 n y 
C14 C21 QFC sing 301 n y 
C F QFC sing 302 n n 
C C1 QFC doub 303 n y 
C16 C17 QFC doub 304 n y 
C2 C1 QFC sing 305 n y 
C2 C31 QFC sing 306 n n 
C21 C20 QFC sing 307 n n 
C21 C18 QFC doub 308 n y 
C31 N4 QFC trip 309 n n 
C20 N2 QFC sing 310 n n 
C17 C18 QFC sing 311 n y 
C18 C19 QFC sing 312 n n 
N2 C19 QFC sing 313 n n 
N2 C22 QFC sing 314 n n 
C19 O1 QFC doub 315 n n 
C23 C22 QFC sing 316 n n 
C23 C24 QFC sing 317 n n 
O3 C26 QFC doub 318 n n 
C22 C26 QFC sing 319 n n 
C26 N3 QFC sing 320 n n 
N3 C25 QFC sing 321 n n 
C24 C25 QFC sing 322 n n 
C25 O2 QFC doub 323 n n 
N3 H2 QFC sing 324 n n 
C4 H3 QFC sing 325 n n 
C6 H4 QFC sing 326 n n 
C6 H5 QFC sing 327 n n 
C7 H6 QFC sing 328 n n 
C7 H7 QFC sing 329 n n 
C8 H8 QFC sing 330 n n 
C8 H9 QFC sing 331 n n 
C10 H10 QFC sing 332 n n 
C13 H11 QFC sing 333 n n 
C13 H12 QFC sing 334 n n 
C15 H13 QFC sing 335 n n 
C17 H14 QFC sing 336 n n 
C20 H15 QFC sing 337 n n 
C20 H16 QFC sing 338 n n 
C22 H17 QFC sing 339 n n 
C24 H18 QFC sing 340 n n 
C24 H19 QFC sing 341 n n 
C28 H20 QFC sing 342 n n 
C1 H21 QFC sing 343 n n 
C11 H22 QFC sing 344 n n 
C16 H23 QFC sing 345 n n 
C23 H24 QFC sing 346 n n 
C23 H25 QFC sing 347 n n 
C27 H26 QFC sing 348 n n 
C29 H27 QFC sing 349 n n 
C29 H28 QFC sing 350 n n 
C3 H29 QFC sing 351 n n 
C30 H30 QFC sing 352 n n 
C30 H31 QFC sing 353 n n 
#
_atom_sites.entry_id                     8RQ8 
_atom_sites.fract_transf_matrix[1][1]    0.01959 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 600 600 ZN ZN . 
C 3 QFC A 1 601 601 QFC QFC . 
D 4 HOH A 1 701 1 HOH HOH . 
D 4 HOH A 2 702 30 HOH HOH . 
D 4 HOH A 3 703 24 HOH HOH . 
D 4 HOH A 4 704 19 HOH HOH . 
D 4 HOH A 5 705 21 HOH HOH . 
D 4 HOH A 6 706 31 HOH HOH . 
D 4 HOH A 7 707 28 HOH HOH . 
D 4 HOH A 8 708 25 HOH HOH . 
D 4 HOH A 9 709 18 HOH HOH . 
D 4 HOH A 10 710 15 HOH HOH . 
D 4 HOH A 11 711 4 HOH HOH . 
D 4 HOH A 12 712 12 HOH HOH . 
D 4 HOH A 13 713 17 HOH HOH . 
D 4 HOH A 14 714 6 HOH HOH . 
D 4 HOH A 15 715 3 HOH HOH . 
D 4 HOH A 16 716 7 HOH HOH . 
D 4 HOH A 17 717 20 HOH HOH . 
D 4 HOH A 18 718 2 HOH HOH . 
D 4 HOH A 19 719 32 HOH HOH . 
D 4 HOH A 20 720 16 HOH HOH . 
D 4 HOH A 21 721 22 HOH HOH . 
D 4 HOH A 22 722 14 HOH HOH . 
D 4 HOH A 23 723 29 HOH HOH . 
D 4 HOH A 24 724 26 HOH HOH . 
D 4 HOH A 25 725 11 HOH HOH . 
D 4 HOH A 26 726 23 HOH HOH . 
D 4 HOH A 27 727 10 HOH HOH . 
D 4 HOH A 28 728 13 HOH HOH . 
D 4 HOH A 29 729 8 HOH HOH . 
D 4 HOH A 30 730 9 HOH HOH . 
D 4 HOH A 31 731 5 HOH HOH . 
D 4 HOH A 32 732 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 QFC . . . C 3 18.364 -1.757 -2.204 1 31.1 ? N1 QFC 601 A 1 
HETATM 2 N N3 QFC . . . C 3 13.573 2.98 -11.018 1 28.9 ? N3 QFC 601 A 1 
HETATM 3 C C4 QFC . . . C 3 15.269 -5.634 -0.149 1 30.66 ? C4 QFC 601 A 1 
HETATM 4 C C5 QFC . . . C 3 16.584 -5.177 0.079 1 27.36 ? C5 QFC 601 A 1 
HETATM 5 C C6 QFC . . . C 3 16.321 -3.006 -1.303 1 26.26 ? C6 QFC 601 A 1 
HETATM 6 C C7 QFC . . . C 3 17.044 -1.652 -1.488 1 28.99 ? C7 QFC 601 A 1 
HETATM 7 C C8 QFC . . . C 3 19.197 -0.381 -1.81 1 32.34 ? C8 QFC 601 A 1 
HETATM 8 C C10 QFC . . . C 3 18.111 1.06 -3.627 1 30.46 ? C10 QFC 601 A 1 
HETATM 9 C C13 QFC . . . C 3 16.355 4.611 -3.477 1 34.65 ? C13 QFC 601 A 1 
HETATM 10 C C15 QFC . . . C 3 13.661 3.635 -2.958 1 31.47 ? C15 QFC 601 A 1 
HETATM 11 C C17 QFC . . . C 3 11.452 3.009 -3.852 1 28.98 ? C17 QFC 601 A 1 
HETATM 12 C C20 QFC . . . C 3 13.442 3.972 -6.913 1 25.74 ? C20 QFC 601 A 1 
HETATM 13 C C21 QFC . . . C 3 13.219 3.741 -5.372 1 25.14 ? C21 QFC 601 A 1 
HETATM 14 C C22 QFC . . . C 3 11.974 3.709 -9.15 1 27.27 ? C22 QFC 601 A 1 
HETATM 15 C C24 QFC . . . C 3 12.118 4.996 -11.312 1 27.67 ? C24 QFC 601 A 1 
HETATM 16 C C26 QFC . . . C 3 12.994 2.669 -9.71 1 26.55 ? C26 QFC 601 A 1 
HETATM 17 C C28 QFC . . . C 3 18.189 1.807 -1.322 1 35.83 ? C28 QFC 601 A 1 
HETATM 18 N N QFC . . . C 3 17.188 -3.978 -0.581 1 25.04 ? N QFC 601 A 1 
HETATM 19 C C QFC . . . C 3 17.387 -5.921 1.02 1 32.26 ? C QFC 601 A 1 
HETATM 20 O O QFC . . . C 3 15.448 4.38 -4.533 1 37.5 ? O QFC 601 A 1 
HETATM 21 C C1 QFC . . . C 3 16.835 -7.072 1.671 1 32.38 ? C1 QFC 601 A 1 
HETATM 22 C C11 QFC . . . C 3 17.451 2.23 -3.988 1 32.41 ? C11 QFC 601 A 1 
HETATM 23 C C12 QFC . . . C 3 17.16 3.207 -2.978 1 31.41 ? C12 QFC 601 A 1 
HETATM 24 C C14 QFC . . . C 3 14.137 3.925 -4.265 1 31.24 ? C14 QFC 601 A 1 
HETATM 25 C C16 QFC . . . C 3 12.328 3.182 -2.758 1 31.5 ? C16 QFC 601 A 1 
HETATM 26 C C18 QFC . . . C 3 11.902 3.291 -5.183 1 27.92 ? C18 QFC 601 A 1 
HETATM 27 C C19 QFC . . . C 3 11.199 3.212 -6.628 1 27.54 ? C19 QFC 601 A 1 
HETATM 28 C C2 QFC . . . C 3 15.505 -7.527 1.43 1 36.53 ? C2 QFC 601 A 1 
HETATM 29 C C23 QFC . . . C 3 12.149 5.093 -9.795 1 27.48 ? C23 QFC 601 A 1 
HETATM 30 C C25 QFC . . . C 3 13.213 4.086 -11.895 1 27.98 ? C25 QFC 601 A 1 
HETATM 31 C C27 QFC . . . C 3 17.521 2.993 -1.668 1 34.83 ? C27 QFC 601 A 1 
HETATM 32 C C29 QFC . . . C 3 19.167 -2.794 -1.627 1 28.91 ? C29 QFC 601 A 1 
HETATM 33 C C3 QFC . . . C 3 14.745 -6.768 0.508 1 37.34 ? C3 QFC 601 A 1 
HETATM 34 C C30 QFC . . . C 3 18.435 -4.145 -1.386 1 27.23 ? C30 QFC 601 A 1 
HETATM 35 C C31 QFC . . . C 3 14.929 -8.75 2.131 1 33.9 ? C31 QFC 601 A 1 
HETATM 36 C C9 QFC . . . C 3 18.488 0.835 -2.276 1 33.9 ? C9 QFC 601 A 1 
HETATM 37 F F QFC . . . C 3 18.633 -5.526 1.269 1 28.98 ? F QFC 601 A 1 
HETATM 38 N N2 QFC . . . C 3 12.157 3.636 -7.625 1 23.53 ? N2 QFC 601 A 1 
HETATM 39 N N4 QFC . . . C 3 14.493 -9.685 2.671 1 42.28 ? N4 QFC 601 A 1 
HETATM 40 O O1 QFC . . . C 3 10.064 2.869 -6.873 1 27.25 ? O1 QFC 601 A 1 
HETATM 41 O O2 QFC . . . C 3 13.72 4.282 -12.975 1 33.19 ? O2 QFC 601 A 1 
HETATM 42 O O3 QFC . . . C 3 13.242 1.663 -9.086 1 25.26 ? O3 QFC 601 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           42 
#