data_8RQD
#
_model_server_result.job_id            Bpxee0zYn7ozYfSGyTOxtA 
_model_server_result.datetime_utc      '2024-11-21 11:22:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rqd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    8RQD 
#
_exptl.entry_id    8RQD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8RQD 
_cell.length_a            139.907 
_cell.length_b            139.907 
_cell.length_c            33.313 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RQD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 237 n n 
C1 C2 PEG sing 238 n n 
C1 H11 PEG sing 239 n n 
C1 H12 PEG sing 240 n n 
O1 HO1 PEG sing 241 n n 
C2 O2 PEG sing 242 n n 
C2 H21 PEG sing 243 n n 
C2 H22 PEG sing 244 n n 
O2 C3 PEG sing 245 n n 
C3 C4 PEG sing 246 n n 
C3 H31 PEG sing 247 n n 
C3 H32 PEG sing 248 n n 
C4 O4 PEG sing 249 n n 
C4 H41 PEG sing 250 n n 
C4 H42 PEG sing 251 n n 
O4 HO4 PEG sing 252 n n 
#
_atom_sites.entry_id                     8RQD 
_atom_sites.fract_transf_matrix[1][1]    0.007148 
_atom_sites.fract_transf_matrix[1][2]    0.004127 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008253 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL C 1 201 1 CL CL . 
D 2 CL C 1 202 2 CL CL . 
E 2 CL C 1 203 4 CL CL . 
F 3 PEG C 1 204 2 PEG PEG . 
G 3 PEG C 1 205 3 PEG PEG . 
H 3 PEG C 1 206 4 PEG PEG . 
I 2 CL A 1 201 3 CL CL . 
J 3 PEG A 1 202 1 PEG PEG . 
K 3 PEG A 1 203 5 PEG PEG . 
L 3 PEG A 1 204 6 PEG PEG . 
M 4 SO4 A 1 205 1 SO4 SO4 . 
N 5 HOH C 1 301 2 HOH HOH . 
N 5 HOH C 2 302 35 HOH HOH . 
N 5 HOH C 3 303 9 HOH HOH . 
N 5 HOH C 4 304 21 HOH HOH . 
N 5 HOH C 5 305 19 HOH HOH . 
N 5 HOH C 6 306 23 HOH HOH . 
N 5 HOH C 7 307 18 HOH HOH . 
N 5 HOH C 8 308 6 HOH HOH . 
N 5 HOH C 9 309 3 HOH HOH . 
N 5 HOH C 10 310 20 HOH HOH . 
N 5 HOH C 11 311 15 HOH HOH . 
N 5 HOH C 12 312 11 HOH HOH . 
N 5 HOH C 13 313 32 HOH HOH . 
N 5 HOH C 14 314 42 HOH HOH . 
N 5 HOH C 15 315 34 HOH HOH . 
N 5 HOH C 16 316 33 HOH HOH . 
N 5 HOH C 17 317 22 HOH HOH . 
N 5 HOH C 18 318 27 HOH HOH . 
O 5 HOH A 1 301 16 HOH HOH . 
O 5 HOH A 2 302 4 HOH HOH . 
O 5 HOH A 3 303 44 HOH HOH . 
O 5 HOH A 4 304 5 HOH HOH . 
O 5 HOH A 5 305 8 HOH HOH . 
O 5 HOH A 6 306 10 HOH HOH . 
O 5 HOH A 7 307 37 HOH HOH . 
O 5 HOH A 8 308 43 HOH HOH . 
O 5 HOH A 9 309 1 HOH HOH . 
O 5 HOH A 10 310 36 HOH HOH . 
O 5 HOH A 11 311 40 HOH HOH . 
O 5 HOH A 12 312 28 HOH HOH . 
O 5 HOH A 13 313 7 HOH HOH . 
O 5 HOH A 14 314 14 HOH HOH . 
O 5 HOH A 15 315 13 HOH HOH . 
O 5 HOH A 16 316 29 HOH HOH . 
O 5 HOH A 17 317 24 HOH HOH . 
O 5 HOH A 18 318 25 HOH HOH . 
O 5 HOH A 19 319 17 HOH HOH . 
O 5 HOH A 20 320 31 HOH HOH . 
O 5 HOH A 21 321 30 HOH HOH . 
O 5 HOH A 22 322 12 HOH HOH . 
O 5 HOH A 23 323 39 HOH HOH . 
O 5 HOH A 24 324 41 HOH HOH . 
O 5 HOH A 25 325 38 HOH HOH . 
O 5 HOH A 26 326 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . G 3 6.172 -29 18.391 1 75.09 ? C1 PEG 205 C 1 
HETATM 2 O O1 PEG . . . G 3 5.557 -27.726 18.542 1 64.73 ? O1 PEG 205 C 1 
HETATM 3 C C2 PEG . . . G 3 5.498 -29.878 17.356 1 74.67 ? C2 PEG 205 C 1 
HETATM 4 O O2 PEG . . . G 3 5.353 -31.21 17.857 1 71.02 ? O2 PEG 205 C 1 
HETATM 5 C C3 PEG . . . G 3 4.827 -32.125 16.903 1 62.6 ? C3 PEG 205 C 1 
HETATM 6 C C4 PEG . . . G 3 4.636 -33.469 17.528 1 60.06 ? C4 PEG 205 C 1 
HETATM 7 O O4 PEG . . . G 3 3.762 -33.429 18.64 1 61.71 ? O4 PEG 205 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
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