data_8RQQ # _model_server_result.job_id CPzYJNrKVxtZfgQCdZpDIw _model_server_result.datetime_utc '2024-11-27 03:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 8RQQ # _exptl.entry_id 8RQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.513 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7.10 monoacylglycerol (S-form)' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RQQ _cell.length_a 39.69 _cell.length_b 180.44 _cell.length_c 141.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 Q NA NA . A NA 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 Q NA NA . A NA 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc3 Q NA NA . A NA 1216 1_555 R O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 Q NA NA . A NA 1216 1_555 R O HOH . A HOH 1321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C20 H38 O4' _chem_comp.formula_weight 342.513 _chem_comp.id A1H2K _chem_comp.mon_nstd_flag . _chem_comp.name '7.10 monoacylglycerol (S-form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2S)-2,3-bis(oxidanyl)propyl] (E)-heptadec-7-enoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 A1H2K sing 1 n n C1 C2 A1H2K sing 2 n n C2 O2 A1H2K sing 3 n n C2 C3 A1H2K sing 4 n n C3 O3 A1H2K sing 5 n n O3 C4 A1H2K sing 6 n n C4 O4 A1H2K doub 7 n n C4 C5 A1H2K sing 8 n n C5 C6 A1H2K sing 9 n n C6 C7 A1H2K sing 10 n n C7 C8 A1H2K sing 11 n n C8 C9 A1H2K sing 12 n n C9 C10 A1H2K sing 13 n n C10 C11 A1H2K doub 14 e n C11 C12 A1H2K sing 15 n n C12 C13 A1H2K sing 16 n n C13 C14 A1H2K sing 17 n n C14 C15 A1H2K sing 18 n n C15 C16 A1H2K sing 19 n n C16 C17 A1H2K sing 20 n n C17 C18 A1H2K sing 21 n n C18 C19 A1H2K sing 22 n n C19 C20 A1H2K sing 23 n n O1 H1 A1H2K sing 24 n n C1 H2 A1H2K sing 25 n n C1 H3 A1H2K sing 26 n n C2 H4 A1H2K sing 27 n n O2 H5 A1H2K sing 28 n n C3 H6 A1H2K sing 29 n n C3 H7 A1H2K sing 30 n n C5 H8 A1H2K sing 31 n n C5 H9 A1H2K sing 32 n n C6 H10 A1H2K sing 33 n n C6 H11 A1H2K sing 34 n n C7 H12 A1H2K sing 35 n n C7 H13 A1H2K sing 36 n n C8 H14 A1H2K sing 37 n n C8 H15 A1H2K sing 38 n n C9 H16 A1H2K sing 39 n n C9 H17 A1H2K sing 40 n n C10 H18 A1H2K sing 41 n n C11 H19 A1H2K sing 42 n n C12 H20 A1H2K sing 43 n n C12 H21 A1H2K sing 44 n n C13 H22 A1H2K sing 45 n n C13 H23 A1H2K sing 46 n n C14 H24 A1H2K sing 47 n n C14 H25 A1H2K sing 48 n n C15 H26 A1H2K sing 49 n n C15 H27 A1H2K sing 50 n n C16 H28 A1H2K sing 51 n n C16 H29 A1H2K sing 52 n n C17 H30 A1H2K sing 53 n n C17 H31 A1H2K sing 54 n n C18 H32 A1H2K sing 55 n n C18 H33 A1H2K sing 56 n n C19 H34 A1H2K sing 57 n n C19 H35 A1H2K sing 58 n n C20 H36 A1H2K sing 59 n n C20 H37 A1H2K sing 60 n n C20 H38 A1H2K sing 61 n n # _atom_sites.entry_id 8RQQ _atom_sites.fract_transf_matrix[1][1] 0.025195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1201 ZMA ZMA . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 A1H2K A 1 1205 1205 A1H2K 7TN . G 4 A1H2K A 1 1206 1206 A1H2K 7TN . H 4 A1H2K A 1 1207 1207 A1H2K 7TN . I 4 A1H2K A 1 1208 1208 A1H2K 7TN . J 4 A1H2K A 1 1209 1209 A1H2K 7TN . K 5 A1H52 A 1 1210 1211 A1H52 7TN . L 4 A1H2K A 1 1211 1212 A1H2K 7TN . M 4 A1H2K A 1 1212 1213 A1H2K 7TN . N 6 GOL A 1 1213 1214 GOL GOL . O 6 GOL A 1 1214 1216 GOL GOL . P 4 A1H2K A 1 1215 1217 A1H2K 7TN . Q 7 NA A 1 1216 1 NA NA . R 8 HOH A 1 1301 35 HOH HOH . R 8 HOH A 2 1302 13 HOH HOH . R 8 HOH A 3 1303 15 HOH HOH . R 8 HOH A 4 1304 3 HOH HOH . R 8 HOH A 5 1305 26 HOH HOH . R 8 HOH A 6 1306 2 HOH HOH . R 8 HOH A 7 1307 27 HOH HOH . R 8 HOH A 8 1308 9 HOH HOH . R 8 HOH A 9 1309 6 HOH HOH . R 8 HOH A 10 1310 10 HOH HOH . R 8 HOH A 11 1311 20 HOH HOH . R 8 HOH A 12 1312 29 HOH HOH . R 8 HOH A 13 1313 25 HOH HOH . R 8 HOH A 14 1314 14 HOH HOH . R 8 HOH A 15 1315 4 HOH HOH . R 8 HOH A 16 1316 19 HOH HOH . R 8 HOH A 17 1317 23 HOH HOH . R 8 HOH A 18 1318 28 HOH HOH . R 8 HOH A 19 1319 1 HOH HOH . R 8 HOH A 20 1320 24 HOH HOH . R 8 HOH A 21 1321 21 HOH HOH . R 8 HOH A 22 1322 18 HOH HOH . R 8 HOH A 23 1323 8 HOH HOH . R 8 HOH A 24 1324 16 HOH HOH . R 8 HOH A 25 1325 7 HOH HOH . R 8 HOH A 26 1326 30 HOH HOH . R 8 HOH A 27 1327 33 HOH HOH . R 8 HOH A 28 1328 22 HOH HOH . R 8 HOH A 29 1329 17 HOH HOH . R 8 HOH A 30 1330 12 HOH HOH . R 8 HOH A 31 1331 34 HOH HOH . R 8 HOH A 32 1332 31 HOH HOH . R 8 HOH A 33 1333 11 HOH HOH . R 8 HOH A 34 1334 32 HOH HOH . R 8 HOH A 35 1335 36 HOH HOH . R 8 HOH A 36 1336 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 A1H2K . . . I 4 -33.239 -24.002 20.466 1 71.57 ? O1 A1H2K 1208 A 1 HETATM 2 C C1 A1H2K . . . I 4 -33.155 -23.252 19.258 1 79.13 ? C1 A1H2K 1208 A 1 HETATM 3 C C2 A1H2K . . . I 4 -34.488 -23.098 18.567 1 69.77 ? C2 A1H2K 1208 A 1 HETATM 4 O O2 A1H2K . . . I 4 -34.252 -22.849 17.181 1 64.21 ? O2 A1H2K 1208 A 1 HETATM 5 C C3 A1H2K . . . I 4 -35.357 -21.964 19.087 1 77.42 ? C3 A1H2K 1208 A 1 HETATM 6 O O3 A1H2K . . . I 4 -35.849 -21.301 17.897 1 74.84 ? O3 A1H2K 1208 A 1 HETATM 7 C C4 A1H2K . . . I 4 -35.318 -20.11 17.553 1 64.96 ? C4 A1H2K 1208 A 1 HETATM 8 O O4 A1H2K . . . I 4 -35.104 -19.805 16.407 1 70.21 ? O4 A1H2K 1208 A 1 HETATM 9 C C5 A1H2K . . . I 4 -35.313 -19.069 18.639 1 64.26 ? C5 A1H2K 1208 A 1 HETATM 10 C C6 A1H2K . . . I 4 -35.659 -17.677 18.093 1 51.81 ? C6 A1H2K 1208 A 1 HETATM 11 C C7 A1H2K . . . I 4 -35.025 -16.518 18.857 1 49.04 ? C7 A1H2K 1208 A 1 HETATM 12 C C8 A1H2K . . . I 4 -35.705 -15.158 18.708 1 50.08 ? C8 A1H2K 1208 A 1 HETATM 13 C C9 A1H2K . . . I 4 -35.208 -14.241 17.581 1 54.3 ? C9 A1H2K 1208 A 1 HETATM 14 C C10 A1H2K . . . I 4 -35.734 -12.827 17.643 1 53.01 ? C10 A1H2K 1208 A 1 HETATM 15 C C11 A1H2K . . . I 4 -35.498 -11.956 18.613 1 50.58 ? C11 A1H2K 1208 A 1 HETATM 16 C C12 A1H2K . . . I 4 -35.983 -10.533 18.718 1 55.01 ? C12 A1H2K 1208 A 1 HETATM 17 C C13 A1H2K . . . I 4 -35.386 -9.555 17.7 1 50.11 ? C13 A1H2K 1208 A 1 HETATM 18 C C14 A1H2K . . . I 4 -35.623 -8.082 18.023 1 60.62 ? C14 A1H2K 1208 A 1 HETATM 19 C C15 A1H2K . . . I 4 -37.078 -7.661 18.189 1 64.72 ? C15 A1H2K 1208 A 1 HETATM 20 H H1 A1H2K . . . I 4 -33.793 -23.626 20.982 0 85.97 ? H1 A1H2K 1208 A 1 HETATM 21 H H2 A1H2K . . . I 4 -32.53 -23.702 18.647 1 95.04 ? H2 A1H2K 1208 A 1 HETATM 22 H H3 A1H2K . . . I 4 -32.799 -22.359 19.463 1 95.04 ? H3 A1H2K 1208 A 1 HETATM 23 H H4 A1H2K . . . I 4 -34.989 -23.945 18.711 1 83.81 ? H4 A1H2K 1208 A 1 HETATM 24 H H5 A1H2K . . . I 4 -33.755 -22.146 17.116 0 77.13 ? H5 A1H2K 1208 A 1 HETATM 25 H H6 A1H2K . . . I 4 -34.833 -21.347 19.639 1 92.99 ? H6 A1H2K 1208 A 1 HETATM 26 H H7 A1H2K . . . I 4 -36.099 -22.311 19.625 1 92.99 ? H7 A1H2K 1208 A 1 HETATM 27 H H8 A1H2K . . . I 4 -34.427 -19.043 19.06 1 77.19 ? H8 A1H2K 1208 A 1 HETATM 28 H H9 A1H2K . . . I 4 -35.962 -19.318 19.331 1 77.19 ? H9 A1H2K 1208 A 1 HETATM 29 H H10 A1H2K . . . I 4 -36.634 -17.563 18.112 1 62.25 ? H10 A1H2K 1208 A 1 HETATM 30 H H11 A1H2K . . . I 4 -35.372 -17.623 17.156 1 62.25 ? H11 A1H2K 1208 A 1 HETATM 31 H H12 A1H2K . . . I 4 -34.094 -16.428 18.56 1 58.93 ? H12 A1H2K 1208 A 1 HETATM 32 H H13 A1H2K . . . I 4 -35.011 -16.75 19.811 1 58.93 ? H13 A1H2K 1208 A 1 HETATM 33 H H14 A1H2K . . . I 4 -35.604 -14.675 19.556 1 60.18 ? H14 A1H2K 1208 A 1 HETATM 34 H H15 A1H2K . . . I 4 -36.665 -15.314 18.568 1 60.18 ? H15 A1H2K 1208 A 1 HETATM 35 H H16 A1H2K . . . I 4 -35.468 -14.634 16.721 1 65.24 ? H16 A1H2K 1208 A 1 HETATM 36 H H17 A1H2K . . . I 4 -34.228 -14.212 17.612 1 65.24 ? H17 A1H2K 1208 A 1 HETATM 37 H H18 A1H2K . . . I 4 -36.281 -12.537 16.922 1 63.69 ? H18 A1H2K 1208 A 1 HETATM 38 H H19 A1H2K . . . I 4 -34.958 -12.264 19.33 1 60.78 ? H19 A1H2K 1208 A 1 HETATM 39 H H20 A1H2K . . . I 4 -35.78 -10.204 19.619 1 66.09 ? H20 A1H2K 1208 A 1 HETATM 40 H H21 A1H2K . . . I 4 -36.958 -10.531 18.612 1 66.09 ? H21 A1H2K 1208 A 1 HETATM 41 H H22 A1H2K . . . I 4 -35.769 -9.749 16.817 1 60.22 ? H22 A1H2K 1208 A 1 HETATM 42 H H23 A1H2K . . . I 4 -34.418 -9.713 17.645 1 60.22 ? H23 A1H2K 1208 A 1 HETATM 43 H H24 A1H2K . . . I 4 -35.227 -7.542 17.305 1 72.82 ? H24 A1H2K 1208 A 1 HETATM 44 H H25 A1H2K . . . I 4 -35.144 -7.868 18.853 1 72.82 ? H25 A1H2K 1208 A 1 HETATM 45 H H26 A1H2K . . . I 4 -37.644 -8.265 17.662 1 77.75 ? H26 A1H2K 1208 A 1 HETATM 46 H H27 A1H2K . . . I 4 -37.187 -6.756 17.823 1 77.75 ? H27 A1H2K 1208 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #