data_8RQQ # _model_server_result.job_id hOclcmkq2dsXq69SUhVHLA _model_server_result.datetime_utc '2024-10-15 11:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1210}' # _entry.id 8RQQ # _exptl.entry_id 8RQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.513 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7.10 monoacylglycerol (R-form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RQQ _cell.length_a 39.69 _cell.length_b 180.44 _cell.length_c 141.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 Q NA NA . A NA 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 Q NA NA . A NA 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc3 Q NA NA . A NA 1216 1_555 R O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 Q NA NA . A NA 1216 1_555 R O HOH . A HOH 1321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C20 H38 O4' _chem_comp.formula_weight 342.513 _chem_comp.id A1H52 _chem_comp.mon_nstd_flag . _chem_comp.name '7.10 monoacylglycerol (R-form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2R)-2,3-bis(oxidanyl)propyl] (E)-heptadec-7-enoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 A1H52 sing 62 n n C1 C2 A1H52 sing 63 n n C3 C2 A1H52 sing 64 n n C3 O3 A1H52 sing 65 n n O4 C4 A1H52 doub 66 n n C2 O2 A1H52 sing 67 n n C4 O3 A1H52 sing 68 n n C4 C5 A1H52 sing 69 n n C8 C7 A1H52 sing 70 n n C8 C9 A1H52 sing 71 n n C7 C6 A1H52 sing 72 n n C5 C6 A1H52 sing 73 n n C9 C10 A1H52 sing 74 n n C10 C11 A1H52 doub 75 e n C11 C12 A1H52 sing 76 n n C12 C13 A1H52 sing 77 n n C13 C14 A1H52 sing 78 n n C14 C15 A1H52 sing 79 n n C15 C16 A1H52 sing 80 n n C17 C16 A1H52 sing 81 n n C17 C18 A1H52 sing 82 n n C18 C19 A1H52 sing 83 n n C19 C20 A1H52 sing 84 n n O1 H1 A1H52 sing 85 n n C1 H2 A1H52 sing 86 n n C1 H3 A1H52 sing 87 n n C2 H4 A1H52 sing 88 n n O2 H5 A1H52 sing 89 n n C3 H6 A1H52 sing 90 n n C3 H7 A1H52 sing 91 n n C5 H8 A1H52 sing 92 n n C5 H9 A1H52 sing 93 n n C6 H11 A1H52 sing 94 n n C6 H10 A1H52 sing 95 n n C7 H13 A1H52 sing 96 n n C7 H12 A1H52 sing 97 n n C8 H14 A1H52 sing 98 n n C8 H15 A1H52 sing 99 n n C9 H16 A1H52 sing 100 n n C9 H17 A1H52 sing 101 n n C10 H18 A1H52 sing 102 n n C11 H19 A1H52 sing 103 n n C12 H20 A1H52 sing 104 n n C12 H21 A1H52 sing 105 n n C13 H22 A1H52 sing 106 n n C13 H23 A1H52 sing 107 n n C14 H24 A1H52 sing 108 n n C14 H25 A1H52 sing 109 n n C15 H26 A1H52 sing 110 n n C15 H27 A1H52 sing 111 n n C16 H28 A1H52 sing 112 n n C16 H29 A1H52 sing 113 n n C17 H30 A1H52 sing 114 n n C17 H31 A1H52 sing 115 n n C18 H32 A1H52 sing 116 n n C18 H33 A1H52 sing 117 n n C19 H34 A1H52 sing 118 n n C19 H35 A1H52 sing 119 n n C20 H37 A1H52 sing 120 n n C20 H36 A1H52 sing 121 n n C20 H38 A1H52 sing 122 n n # _atom_sites.entry_id 8RQQ _atom_sites.fract_transf_matrix[1][1] 0.025195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1201 ZMA ZMA . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 A1H2K A 1 1205 1205 A1H2K 7TN . G 4 A1H2K A 1 1206 1206 A1H2K 7TN . H 4 A1H2K A 1 1207 1207 A1H2K 7TN . I 4 A1H2K A 1 1208 1208 A1H2K 7TN . J 4 A1H2K A 1 1209 1209 A1H2K 7TN . K 5 A1H52 A 1 1210 1211 A1H52 7TN . L 4 A1H2K A 1 1211 1212 A1H2K 7TN . M 4 A1H2K A 1 1212 1213 A1H2K 7TN . N 6 GOL A 1 1213 1214 GOL GOL . O 6 GOL A 1 1214 1216 GOL GOL . P 4 A1H2K A 1 1215 1217 A1H2K 7TN . Q 7 NA A 1 1216 1 NA NA . R 8 HOH A 1 1301 35 HOH HOH . R 8 HOH A 2 1302 13 HOH HOH . R 8 HOH A 3 1303 15 HOH HOH . R 8 HOH A 4 1304 3 HOH HOH . R 8 HOH A 5 1305 26 HOH HOH . R 8 HOH A 6 1306 2 HOH HOH . R 8 HOH A 7 1307 27 HOH HOH . R 8 HOH A 8 1308 9 HOH HOH . R 8 HOH A 9 1309 6 HOH HOH . R 8 HOH A 10 1310 10 HOH HOH . R 8 HOH A 11 1311 20 HOH HOH . R 8 HOH A 12 1312 29 HOH HOH . R 8 HOH A 13 1313 25 HOH HOH . R 8 HOH A 14 1314 14 HOH HOH . R 8 HOH A 15 1315 4 HOH HOH . R 8 HOH A 16 1316 19 HOH HOH . R 8 HOH A 17 1317 23 HOH HOH . R 8 HOH A 18 1318 28 HOH HOH . R 8 HOH A 19 1319 1 HOH HOH . R 8 HOH A 20 1320 24 HOH HOH . R 8 HOH A 21 1321 21 HOH HOH . R 8 HOH A 22 1322 18 HOH HOH . R 8 HOH A 23 1323 8 HOH HOH . R 8 HOH A 24 1324 16 HOH HOH . R 8 HOH A 25 1325 7 HOH HOH . R 8 HOH A 26 1326 30 HOH HOH . R 8 HOH A 27 1327 33 HOH HOH . R 8 HOH A 28 1328 22 HOH HOH . R 8 HOH A 29 1329 17 HOH HOH . R 8 HOH A 30 1330 12 HOH HOH . R 8 HOH A 31 1331 34 HOH HOH . R 8 HOH A 32 1332 31 HOH HOH . R 8 HOH A 33 1333 11 HOH HOH . R 8 HOH A 34 1334 32 HOH HOH . R 8 HOH A 35 1335 36 HOH HOH . R 8 HOH A 36 1336 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 A1H52 . . . K 5 -20.939 13.332 5.442 1 79.6 ? O1 A1H52 1210 A 1 HETATM 2 C C1 A1H52 . . . K 5 -21.489 12.195 4.791 1 79.71 ? C1 A1H52 1210 A 1 HETATM 3 C C2 A1H52 . . . K 5 -22.486 11.454 5.606 1 63.79 ? C2 A1H52 1210 A 1 HETATM 4 O O2 A1H52 . . . K 5 -23.518 12.181 6.198 1 52.88 ? O2 A1H52 1210 A 1 HETATM 5 C C3 A1H52 . . . K 5 -22.758 10.068 5.093 1 63.31 ? C3 A1H52 1210 A 1 HETATM 6 O O3 A1H52 . . . K 5 -21.509 9.404 4.784 1 70.97 ? O3 A1H52 1210 A 1 HETATM 7 C C4 A1H52 . . . K 5 -21.541 8.148 4.28 1 64.03 ? C4 A1H52 1210 A 1 HETATM 8 O O4 A1H52 . . . K 5 -20.544 7.508 4.049 1 55.46 ? O4 A1H52 1210 A 1 HETATM 9 C C5 A1H52 . . . K 5 -22.915 7.606 4.004 1 61.91 ? C5 A1H52 1210 A 1 HETATM 10 C C6 A1H52 . . . K 5 -22.892 6.25 3.305 1 55.56 ? C6 A1H52 1210 A 1 HETATM 11 C C7 A1H52 . . . K 5 -22.439 5.118 4.203 1 52.7 ? C7 A1H52 1210 A 1 HETATM 12 C C8 A1H52 . . . K 5 -21.175 4.391 3.761 1 54.94 ? C8 A1H52 1210 A 1 HETATM 13 C C9 A1H52 . . . K 5 -21.258 3.424 2.572 1 55.7 ? C9 A1H52 1210 A 1 HETATM 14 C C10 A1H52 . . . K 5 -20.171 2.406 2.754 1 55.14 ? C10 A1H52 1210 A 1 HETATM 15 C C11 A1H52 . . . K 5 -20.297 1.298 3.467 1 72.09 ? C11 A1H52 1210 A 1 HETATM 16 C C12 A1H52 . . . K 5 -19.171 0.434 3.967 1 69.68 ? C12 A1H52 1210 A 1 HETATM 17 C C13 A1H52 . . . K 5 -19.627 -0.815 4.729 1 60.14 ? C13 A1H52 1210 A 1 HETATM 18 C C14 A1H52 . . . K 5 -19.22 -2.133 4.083 1 68.6 ? C14 A1H52 1210 A 1 HETATM 19 C C15 A1H52 . . . K 5 -18.183 -2.907 4.887 1 73.08 ? C15 A1H52 1210 A 1 HETATM 20 C C16 A1H52 . . . K 5 -17.731 -4.245 4.315 1 65.65 ? C16 A1H52 1210 A 1 HETATM 21 C C17 A1H52 . . . K 5 -18.647 -5.423 4.62 1 60.86 ? C17 A1H52 1210 A 1 HETATM 22 C C18 A1H52 . . . K 5 -17.919 -6.752 4.779 1 63.1 ? C18 A1H52 1210 A 1 HETATM 23 C C19 A1H52 . . . K 5 -17.427 -7.069 6.185 1 53.68 ? C19 A1H52 1210 A 1 HETATM 24 C C20 A1H52 . . . K 5 -16.475 -6.057 6.783 1 70.34 ? C20 A1H52 1210 A 1 HETATM 25 H H1 A1H52 . . . K 5 -20.637 13.095 6.196 0 95.6 ? H1 A1H52 1210 A 1 HETATM 26 H H2 A1H52 . . . K 5 -20.756 11.582 4.559 1 95.73 ? H2 A1H52 1210 A 1 HETATM 27 H H3 A1H52 . . . K 5 -21.921 12.489 3.959 1 95.73 ? H3 A1H52 1210 A 1 HETATM 28 H H4 A1H52 . . . K 5 -22.075 11.292 6.496 1 76.64 ? H4 A1H52 1210 A 1 HETATM 29 H H5 A1H52 . . . K 5 -24.014 11.63 6.641 0 63.53 ? H5 A1H52 1210 A 1 HETATM 30 H H6 A1H52 . . . K 5 -23.312 10.12 4.286 1 76.06 ? H6 A1H52 1210 A 1 HETATM 31 H H7 A1H52 . . . K 5 -23.244 9.556 5.773 1 76.06 ? H7 A1H52 1210 A 1 HETATM 32 H H8 A1H52 . . . K 5 -23.405 8.247 3.446 1 74.37 ? H8 A1H52 1210 A 1 HETATM 33 H H9 A1H52 . . . K 5 -23.401 7.521 4.852 1 74.37 ? H9 A1H52 1210 A 1 HETATM 34 H H11 A1H52 . . . K 5 -23.792 6.045 2.97 1 66.76 ? H11 A1H52 1210 A 1 HETATM 35 H H10 A1H52 . . . K 5 -22.291 6.297 2.53 1 66.76 ? H10 A1H52 1210 A 1 HETATM 36 H H13 A1H52 . . . K 5 -22.288 5.479 5.104 1 63.32 ? H13 A1H52 1210 A 1 HETATM 37 H H12 A1H52 . . . K 5 -23.167 4.462 4.265 1 63.32 ? H12 A1H52 1210 A 1 HETATM 38 H H14 A1H52 . . . K 5 -20.84 3.883 4.532 1 66.02 ? H14 A1H52 1210 A 1 HETATM 39 H H15 A1H52 . . . K 5 -20.503 5.072 3.541 1 66.02 ? H15 A1H52 1210 A 1 HETATM 40 H H16 A1H52 . . . K 5 -21.139 3.907 1.727 1 66.92 ? H16 A1H52 1210 A 1 HETATM 41 H H17 A1H52 . . . K 5 -22.136 2.988 2.544 1 66.92 ? H17 A1H52 1210 A 1 HETATM 42 H H18 A1H52 . . . K 5 -19.337 2.569 2.328 1 66.25 ? H18 A1H52 1210 A 1 HETATM 43 H H19 A1H52 . . . K 5 -21.18 1.022 3.684 1 86.6 ? H19 A1H52 1210 A 1 HETATM 44 H H20 A1H52 . . . K 5 -18.601 0.972 4.557 1 83.7 ? H20 A1H52 1210 A 1 HETATM 45 H H21 A1H52 . . . K 5 -18.627 0.154 3.201 1 83.7 ? H21 A1H52 1210 A 1 HETATM 46 H H22 A1H52 . . . K 5 -20.605 -0.794 4.81 1 72.25 ? H22 A1H52 1210 A 1 HETATM 47 H H23 A1H52 . . . K 5 -19.254 -0.782 5.637 1 72.25 ? H23 A1H52 1210 A 1 HETATM 48 H H24 A1H52 . . . K 5 -18.858 -1.951 3.189 1 82.4 ? H24 A1H52 1210 A 1 HETATM 49 H H25 A1H52 . . . K 5 -20.019 -2.693 3.971 1 82.4 ? H25 A1H52 1210 A 1 HETATM 50 H H26 A1H52 . . . K 5 -18.55 -3.067 5.783 1 87.78 ? H26 A1H52 1210 A 1 HETATM 51 H H27 A1H52 . . . K 5 -17.39 -2.337 4.989 1 87.78 ? H27 A1H52 1210 A 1 HETATM 52 H H28 A1H52 . . . K 5 -16.837 -4.447 4.667 1 78.87 ? H28 A1H52 1210 A 1 HETATM 53 H H29 A1H52 . . . K 5 -17.654 -4.156 3.34 1 78.87 ? H29 A1H52 1210 A 1 HETATM 54 H H30 A1H52 . . . K 5 -19.304 -5.508 3.896 1 73.11 ? H30 A1H52 1210 A 1 HETATM 55 H H31 A1H52 . . . K 5 -19.141 -5.233 5.448 1 73.11 ? H31 A1H52 1210 A 1 HETATM 56 H H32 A1H52 . . . K 5 -17.146 -6.756 4.173 1 75.8 ? H32 A1H52 1210 A 1 HETATM 57 H H33 A1H52 . . . K 5 -18.523 -7.472 4.494 1 75.8 ? H33 A1H52 1210 A 1 HETATM 58 H H34 A1H52 . . . K 5 -16.98 -7.942 6.164 1 64.5 ? H34 A1H52 1210 A 1 HETATM 59 H H35 A1H52 . . . K 5 -18.208 -7.147 6.773 1 64.5 ? H35 A1H52 1210 A 1 HETATM 60 H H37 A1H52 . . . K 5 -16.122 -6.399 7.626 1 84.49 ? H37 A1H52 1210 A 1 HETATM 61 H H36 A1H52 . . . K 5 -15.737 -5.897 6.164 1 84.49 ? H36 A1H52 1210 A 1 HETATM 62 H H38 A1H52 . . . K 5 -16.948 -5.219 6.945 1 84.49 ? H38 A1H52 1210 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 62 #