data_8RQQ # _model_server_result.job_id jj54_lc9AaZH2VDNR54mhA _model_server_result.datetime_utc '2024-10-15 11:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1216}' # _entry.id 8RQQ # _exptl.entry_id 8RQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RQQ _cell.length_a 39.69 _cell.length_b 180.44 _cell.length_c 141.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 Q NA NA . A NA 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 Q NA NA . A NA 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc3 Q NA NA . A NA 1216 1_555 R O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 Q NA NA . A NA 1216 1_555 R O HOH . A HOH 1321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RQQ _atom_sites.fract_transf_matrix[1][1] 0.025195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1201 ZMA ZMA . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 A1H2K A 1 1205 1205 A1H2K 7TN . G 4 A1H2K A 1 1206 1206 A1H2K 7TN . H 4 A1H2K A 1 1207 1207 A1H2K 7TN . I 4 A1H2K A 1 1208 1208 A1H2K 7TN . J 4 A1H2K A 1 1209 1209 A1H2K 7TN . K 5 A1H52 A 1 1210 1211 A1H52 7TN . L 4 A1H2K A 1 1211 1212 A1H2K 7TN . M 4 A1H2K A 1 1212 1213 A1H2K 7TN . N 6 GOL A 1 1213 1214 GOL GOL . O 6 GOL A 1 1214 1216 GOL GOL . P 4 A1H2K A 1 1215 1217 A1H2K 7TN . Q 7 NA A 1 1216 1 NA NA . R 8 HOH A 1 1301 35 HOH HOH . R 8 HOH A 2 1302 13 HOH HOH . R 8 HOH A 3 1303 15 HOH HOH . R 8 HOH A 4 1304 3 HOH HOH . R 8 HOH A 5 1305 26 HOH HOH . R 8 HOH A 6 1306 2 HOH HOH . R 8 HOH A 7 1307 27 HOH HOH . R 8 HOH A 8 1308 9 HOH HOH . R 8 HOH A 9 1309 6 HOH HOH . R 8 HOH A 10 1310 10 HOH HOH . R 8 HOH A 11 1311 20 HOH HOH . R 8 HOH A 12 1312 29 HOH HOH . R 8 HOH A 13 1313 25 HOH HOH . R 8 HOH A 14 1314 14 HOH HOH . R 8 HOH A 15 1315 4 HOH HOH . R 8 HOH A 16 1316 19 HOH HOH . R 8 HOH A 17 1317 23 HOH HOH . R 8 HOH A 18 1318 28 HOH HOH . R 8 HOH A 19 1319 1 HOH HOH . R 8 HOH A 20 1320 24 HOH HOH . R 8 HOH A 21 1321 21 HOH HOH . R 8 HOH A 22 1322 18 HOH HOH . R 8 HOH A 23 1323 8 HOH HOH . R 8 HOH A 24 1324 16 HOH HOH . R 8 HOH A 25 1325 7 HOH HOH . R 8 HOH A 26 1326 30 HOH HOH . R 8 HOH A 27 1327 33 HOH HOH . R 8 HOH A 28 1328 22 HOH HOH . R 8 HOH A 29 1329 17 HOH HOH . R 8 HOH A 30 1330 12 HOH HOH . R 8 HOH A 31 1331 34 HOH HOH . R 8 HOH A 32 1332 31 HOH HOH . R 8 HOH A 33 1333 11 HOH HOH . R 8 HOH A 34 1334 32 HOH HOH . R 8 HOH A 35 1335 36 HOH HOH . R 8 HOH A 36 1336 37 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 7 _atom_site.Cartn_x -23.62 _atom_site.Cartn_y -8.502 _atom_site.Cartn_z 16.336 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1216 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #