data_8RQV # _model_server_result.job_id -jy5IPVxKT95J-9n1fxf0A _model_server_result.datetime_utc '2025-02-22 22:11:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8RQV # _exptl.entry_id 8RQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.39 _cell.angle_gamma 90 _cell.entry_id 8RQV _cell.length_a 48.757 _cell.length_b 70.279 _cell.length_c 59.889 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8RQV _atom_sites.fract_transf_matrix[1][1] 0.02051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007219 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 HOH A 1 601 82 HOH HOH . C 3 HOH A 2 602 51 HOH HOH . C 3 HOH A 3 603 7 HOH HOH . C 3 HOH A 4 604 58 HOH HOH . C 3 HOH A 5 605 40 HOH HOH . C 3 HOH A 6 606 9 HOH HOH . C 3 HOH A 7 607 76 HOH HOH . C 3 HOH A 8 608 21 HOH HOH . C 3 HOH A 9 609 43 HOH HOH . C 3 HOH A 10 610 50 HOH HOH . C 3 HOH A 11 611 84 HOH HOH . C 3 HOH A 12 612 22 HOH HOH . C 3 HOH A 13 613 77 HOH HOH . C 3 HOH A 14 614 28 HOH HOH . C 3 HOH A 15 615 14 HOH HOH . C 3 HOH A 16 616 44 HOH HOH . C 3 HOH A 17 617 3 HOH HOH . C 3 HOH A 18 618 1 HOH HOH . C 3 HOH A 19 619 13 HOH HOH . C 3 HOH A 20 620 17 HOH HOH . C 3 HOH A 21 621 25 HOH HOH . C 3 HOH A 22 622 47 HOH HOH . C 3 HOH A 23 623 79 HOH HOH . C 3 HOH A 24 624 52 HOH HOH . C 3 HOH A 25 625 33 HOH HOH . C 3 HOH A 26 626 8 HOH HOH . C 3 HOH A 27 627 2 HOH HOH . C 3 HOH A 28 628 18 HOH HOH . C 3 HOH A 29 629 31 HOH HOH . C 3 HOH A 30 630 71 HOH HOH . C 3 HOH A 31 631 5 HOH HOH . C 3 HOH A 32 632 34 HOH HOH . C 3 HOH A 33 633 73 HOH HOH . C 3 HOH A 34 634 57 HOH HOH . C 3 HOH A 35 635 4 HOH HOH . C 3 HOH A 36 636 45 HOH HOH . C 3 HOH A 37 637 20 HOH HOH . C 3 HOH A 38 638 81 HOH HOH . C 3 HOH A 39 639 55 HOH HOH . C 3 HOH A 40 640 35 HOH HOH . C 3 HOH A 41 641 80 HOH HOH . C 3 HOH A 42 642 62 HOH HOH . C 3 HOH A 43 643 65 HOH HOH . C 3 HOH A 44 644 6 HOH HOH . C 3 HOH A 45 645 10 HOH HOH . C 3 HOH A 46 646 78 HOH HOH . C 3 HOH A 47 647 59 HOH HOH . C 3 HOH A 48 648 67 HOH HOH . C 3 HOH A 49 649 12 HOH HOH . C 3 HOH A 50 650 70 HOH HOH . C 3 HOH A 51 651 61 HOH HOH . C 3 HOH A 52 652 36 HOH HOH . C 3 HOH A 53 653 24 HOH HOH . C 3 HOH A 54 654 32 HOH HOH . C 3 HOH A 55 655 60 HOH HOH . C 3 HOH A 56 656 23 HOH HOH . C 3 HOH A 57 657 16 HOH HOH . C 3 HOH A 58 658 29 HOH HOH . C 3 HOH A 59 659 39 HOH HOH . C 3 HOH A 60 660 69 HOH HOH . C 3 HOH A 61 661 15 HOH HOH . C 3 HOH A 62 662 30 HOH HOH . C 3 HOH A 63 663 49 HOH HOH . C 3 HOH A 64 664 19 HOH HOH . C 3 HOH A 65 665 64 HOH HOH . C 3 HOH A 66 666 74 HOH HOH . C 3 HOH A 67 667 27 HOH HOH . C 3 HOH A 68 668 75 HOH HOH . C 3 HOH A 69 669 37 HOH HOH . C 3 HOH A 70 670 48 HOH HOH . C 3 HOH A 71 671 42 HOH HOH . C 3 HOH A 72 672 38 HOH HOH . C 3 HOH A 73 673 41 HOH HOH . C 3 HOH A 74 674 53 HOH HOH . C 3 HOH A 75 675 68 HOH HOH . C 3 HOH A 76 676 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 1.799 14.431 12.19 1 132.33 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 2.802 13.485 11.588 1 132.75 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 0.466 13.736 12.031 1 133.25 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 2.077 14.515 13.678 1 129.07 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 1.231 17.368 11.769 1 111.58 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 2.205 18.316 12.416 1 103.07 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 0.336 17.913 10.682 1 101.46 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 1.891 15.892 11.409 1 119.2 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -1.161 16.203 12.928 1 78.39 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -1.48 15.892 11.503 1 83.57 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -1.241 15.105 13.943 1 81.16 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 0.285 16.889 12.969 1 92.67 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -2.015 17.469 13.425 1 70.14 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -2.927 18.22 12.58 1 52.13 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -4.269 18.226 13.259 1 46.8 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -5.089 17.165 12.695 1 44.06 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -4.211 17.961 14.771 1 44.01 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -5.154 18.77 15.457 1 42.78 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -4.462 16.447 14.847 1 44.34 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -4.923 16.024 16.118 1 41.58 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -5.457 16.239 13.696 1 43.73 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -5.456 14.846 13.135 1 40.74 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -4.386 14.13 12.611 1 40.81 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -4.719 12.907 12.253 1 38.4 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -6.065 12.786 12.588 1 35.76 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -6.992 11.72 12.47 1 32.74 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -6.707 10.508 11.978 1 26.06 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -8.248 11.956 12.909 1 30.87 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -8.545 13.167 13.402 1 33.95 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -7.763 14.233 13.565 1 36.71 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -6.519 13.975 13.132 1 37.41 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #