data_8RQW # _model_server_result.job_id qTpxNB_LTuAT-D-jkumQJw _model_server_result.datetime_utc '2025-03-01 07:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8RQW # _exptl.entry_id 8RQW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.61 _cell.angle_gamma 90 _cell.entry_id 8RQW _cell.length_a 48.913 _cell.length_b 70.601 _cell.length_c 60.409 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8RQW _atom_sites.fract_transf_matrix[1][1] 0.020444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 HOH A 1 601 92 HOH HOH . C 3 HOH A 2 602 46 HOH HOH . C 3 HOH A 3 603 53 HOH HOH . C 3 HOH A 4 604 60 HOH HOH . C 3 HOH A 5 605 54 HOH HOH . C 3 HOH A 6 606 111 HOH HOH . C 3 HOH A 7 607 33 HOH HOH . C 3 HOH A 8 608 105 HOH HOH . C 3 HOH A 9 609 109 HOH HOH . C 3 HOH A 10 610 20 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 9 HOH HOH . C 3 HOH A 13 613 49 HOH HOH . C 3 HOH A 14 614 87 HOH HOH . C 3 HOH A 15 615 68 HOH HOH . C 3 HOH A 16 616 39 HOH HOH . C 3 HOH A 17 617 57 HOH HOH . C 3 HOH A 18 618 118 HOH HOH . C 3 HOH A 19 619 78 HOH HOH . C 3 HOH A 20 620 104 HOH HOH . C 3 HOH A 21 621 73 HOH HOH . C 3 HOH A 22 622 95 HOH HOH . C 3 HOH A 23 623 133 HOH HOH . C 3 HOH A 24 624 93 HOH HOH . C 3 HOH A 25 625 3 HOH HOH . C 3 HOH A 26 626 108 HOH HOH . C 3 HOH A 27 627 76 HOH HOH . C 3 HOH A 28 628 69 HOH HOH . C 3 HOH A 29 629 52 HOH HOH . C 3 HOH A 30 630 4 HOH HOH . C 3 HOH A 31 631 99 HOH HOH . C 3 HOH A 32 632 114 HOH HOH . C 3 HOH A 33 633 47 HOH HOH . C 3 HOH A 34 634 63 HOH HOH . C 3 HOH A 35 635 8 HOH HOH . C 3 HOH A 36 636 16 HOH HOH . C 3 HOH A 37 637 31 HOH HOH . C 3 HOH A 38 638 6 HOH HOH . C 3 HOH A 39 639 59 HOH HOH . C 3 HOH A 40 640 56 HOH HOH . C 3 HOH A 41 641 86 HOH HOH . C 3 HOH A 42 642 123 HOH HOH . C 3 HOH A 43 643 61 HOH HOH . C 3 HOH A 44 644 42 HOH HOH . C 3 HOH A 45 645 12 HOH HOH . C 3 HOH A 46 646 17 HOH HOH . C 3 HOH A 47 647 25 HOH HOH . C 3 HOH A 48 648 64 HOH HOH . C 3 HOH A 49 649 128 HOH HOH . C 3 HOH A 50 650 103 HOH HOH . C 3 HOH A 51 651 37 HOH HOH . C 3 HOH A 52 652 94 HOH HOH . C 3 HOH A 53 653 1 HOH HOH . C 3 HOH A 54 654 26 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 75 HOH HOH . C 3 HOH A 57 657 88 HOH HOH . C 3 HOH A 58 658 2 HOH HOH . C 3 HOH A 59 659 66 HOH HOH . C 3 HOH A 60 660 58 HOH HOH . C 3 HOH A 61 661 30 HOH HOH . C 3 HOH A 62 662 40 HOH HOH . C 3 HOH A 63 663 32 HOH HOH . C 3 HOH A 64 664 107 HOH HOH . C 3 HOH A 65 665 48 HOH HOH . C 3 HOH A 66 666 24 HOH HOH . C 3 HOH A 67 667 13 HOH HOH . C 3 HOH A 68 668 19 HOH HOH . C 3 HOH A 69 669 81 HOH HOH . C 3 HOH A 70 670 43 HOH HOH . C 3 HOH A 71 671 97 HOH HOH . C 3 HOH A 72 672 121 HOH HOH . C 3 HOH A 73 673 22 HOH HOH . C 3 HOH A 74 674 5 HOH HOH . C 3 HOH A 75 675 7 HOH HOH . C 3 HOH A 76 676 117 HOH HOH . C 3 HOH A 77 677 51 HOH HOH . C 3 HOH A 78 678 14 HOH HOH . C 3 HOH A 79 679 91 HOH HOH . C 3 HOH A 80 680 110 HOH HOH . C 3 HOH A 81 681 79 HOH HOH . C 3 HOH A 82 682 45 HOH HOH . C 3 HOH A 83 683 34 HOH HOH . C 3 HOH A 84 684 84 HOH HOH . C 3 HOH A 85 685 65 HOH HOH . C 3 HOH A 86 686 77 HOH HOH . C 3 HOH A 87 687 102 HOH HOH . C 3 HOH A 88 688 10 HOH HOH . C 3 HOH A 89 689 15 HOH HOH . C 3 HOH A 90 690 29 HOH HOH . C 3 HOH A 91 691 112 HOH HOH . C 3 HOH A 92 692 106 HOH HOH . C 3 HOH A 93 693 116 HOH HOH . C 3 HOH A 94 694 23 HOH HOH . C 3 HOH A 95 695 127 HOH HOH . C 3 HOH A 96 696 62 HOH HOH . C 3 HOH A 97 697 21 HOH HOH . C 3 HOH A 98 698 74 HOH HOH . C 3 HOH A 99 699 38 HOH HOH . C 3 HOH A 100 700 27 HOH HOH . C 3 HOH A 101 701 80 HOH HOH . C 3 HOH A 102 702 28 HOH HOH . C 3 HOH A 103 703 72 HOH HOH . C 3 HOH A 104 704 71 HOH HOH . C 3 HOH A 105 705 35 HOH HOH . C 3 HOH A 106 706 126 HOH HOH . C 3 HOH A 107 707 41 HOH HOH . C 3 HOH A 108 708 131 HOH HOH . C 3 HOH A 109 709 70 HOH HOH . C 3 HOH A 110 710 36 HOH HOH . C 3 HOH A 111 711 67 HOH HOH . C 3 HOH A 112 712 115 HOH HOH . C 3 HOH A 113 713 89 HOH HOH . C 3 HOH A 114 714 85 HOH HOH . C 3 HOH A 115 715 96 HOH HOH . C 3 HOH A 116 716 90 HOH HOH . C 3 HOH A 117 717 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 0.542 18.289 13.787 1 129.81 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 0.506 19.594 13.03 1 133.27 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 1.783 18.266 14.65 1 131.41 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -0.647 18.295 14.718 1 123.16 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 1.711 15.907 12.478 1 118.62 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 2.355 15.518 13.781 1 126.14 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 2.584 16.198 11.29 1 113.43 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 0.542 17.041 12.719 1 128.28 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -0.491 14.026 12.624 1 104.31 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -0.256 13.656 14.051 1 101.83 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -1.025 12.975 11.705 1 106.55 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 0.894 14.596 12.055 1 117.9 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -1.399 15.362 12.523 1 94.75 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -2.02 15.826 13.745 1 85.06 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -3.022 16.937 13.502 1 79.66 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -4.12 16.497 12.658 1 77.05 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -3.785 17.34 14.762 1 76.73 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -4.652 18.45 14.563 1 68.72 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -4.598 16.055 14.922 1 72.21 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -5.502 16.189 15.998 1 70.88 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -5.117 15.914 13.478 1 62.68 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -5.28 14.534 13.024 1 50.54 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -4.297 13.717 12.52 1 45.79 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -4.741 12.52 12.211 1 51.31 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -6.092 12.55 12.535 1 38.73 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -7.11 11.578 12.438 1 36.08 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -6.931 10.356 11.931 1 30.09 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -8.347 11.943 12.853 1 31.88 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -8.528 13.196 13.298 1 33.38 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -7.645 14.191 13.431 1 40 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -6.432 13.795 13.021 1 42.58 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #