data_8RQX # _model_server_result.job_id GITMXx2DbAKPO-BhKxFDeg _model_server_result.datetime_utc '2025-01-30 19:48:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8RQX # _exptl.entry_id 8RQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.25 _cell.angle_gamma 90 _cell.entry_id 8RQX _cell.length_a 48.663 _cell.length_b 70.05 _cell.length_c 59.605 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8RQX _atom_sites.fract_transf_matrix[1][1] 0.020549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007176 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 HOH A 1 601 126 HOH HOH . C 3 HOH A 2 602 60 HOH HOH . C 3 HOH A 3 603 42 HOH HOH . C 3 HOH A 4 604 57 HOH HOH . C 3 HOH A 5 605 13 HOH HOH . C 3 HOH A 6 606 108 HOH HOH . C 3 HOH A 7 607 43 HOH HOH . C 3 HOH A 8 608 133 HOH HOH . C 3 HOH A 9 609 120 HOH HOH . C 3 HOH A 10 610 82 HOH HOH . C 3 HOH A 11 611 115 HOH HOH . C 3 HOH A 12 612 41 HOH HOH . C 3 HOH A 13 613 95 HOH HOH . C 3 HOH A 14 614 26 HOH HOH . C 3 HOH A 15 615 63 HOH HOH . C 3 HOH A 16 616 107 HOH HOH . C 3 HOH A 17 617 51 HOH HOH . C 3 HOH A 18 618 54 HOH HOH . C 3 HOH A 19 619 12 HOH HOH . C 3 HOH A 20 620 62 HOH HOH . C 3 HOH A 21 621 11 HOH HOH . C 3 HOH A 22 622 59 HOH HOH . C 3 HOH A 23 623 50 HOH HOH . C 3 HOH A 24 624 92 HOH HOH . C 3 HOH A 25 625 135 HOH HOH . C 3 HOH A 26 626 5 HOH HOH . C 3 HOH A 27 627 99 HOH HOH . C 3 HOH A 28 628 114 HOH HOH . C 3 HOH A 29 629 32 HOH HOH . C 3 HOH A 30 630 65 HOH HOH . C 3 HOH A 31 631 72 HOH HOH . C 3 HOH A 32 632 30 HOH HOH . C 3 HOH A 33 633 37 HOH HOH . C 3 HOH A 34 634 125 HOH HOH . C 3 HOH A 35 635 55 HOH HOH . C 3 HOH A 36 636 68 HOH HOH . C 3 HOH A 37 637 14 HOH HOH . C 3 HOH A 38 638 116 HOH HOH . C 3 HOH A 39 639 71 HOH HOH . C 3 HOH A 40 640 128 HOH HOH . C 3 HOH A 41 641 110 HOH HOH . C 3 HOH A 42 642 74 HOH HOH . C 3 HOH A 43 643 39 HOH HOH . C 3 HOH A 44 644 136 HOH HOH . C 3 HOH A 45 645 9 HOH HOH . C 3 HOH A 46 646 100 HOH HOH . C 3 HOH A 47 647 85 HOH HOH . C 3 HOH A 48 648 78 HOH HOH . C 3 HOH A 49 649 16 HOH HOH . C 3 HOH A 50 650 70 HOH HOH . C 3 HOH A 51 651 91 HOH HOH . C 3 HOH A 52 652 27 HOH HOH . C 3 HOH A 53 653 40 HOH HOH . C 3 HOH A 54 654 48 HOH HOH . C 3 HOH A 55 655 20 HOH HOH . C 3 HOH A 56 656 77 HOH HOH . C 3 HOH A 57 657 1 HOH HOH . C 3 HOH A 58 658 122 HOH HOH . C 3 HOH A 59 659 10 HOH HOH . C 3 HOH A 60 660 75 HOH HOH . C 3 HOH A 61 661 31 HOH HOH . C 3 HOH A 62 662 18 HOH HOH . C 3 HOH A 63 663 22 HOH HOH . C 3 HOH A 64 664 94 HOH HOH . C 3 HOH A 65 665 58 HOH HOH . C 3 HOH A 66 666 2 HOH HOH . C 3 HOH A 67 667 4 HOH HOH . C 3 HOH A 68 668 6 HOH HOH . C 3 HOH A 69 669 19 HOH HOH . C 3 HOH A 70 670 45 HOH HOH . C 3 HOH A 71 671 52 HOH HOH . C 3 HOH A 72 672 15 HOH HOH . C 3 HOH A 73 673 69 HOH HOH . C 3 HOH A 74 674 21 HOH HOH . C 3 HOH A 75 675 80 HOH HOH . C 3 HOH A 76 676 83 HOH HOH . C 3 HOH A 77 677 8 HOH HOH . C 3 HOH A 78 678 36 HOH HOH . C 3 HOH A 79 679 17 HOH HOH . C 3 HOH A 80 680 117 HOH HOH . C 3 HOH A 81 681 47 HOH HOH . C 3 HOH A 82 682 28 HOH HOH . C 3 HOH A 83 683 25 HOH HOH . C 3 HOH A 84 684 113 HOH HOH . C 3 HOH A 85 685 3 HOH HOH . C 3 HOH A 86 686 7 HOH HOH . C 3 HOH A 87 687 131 HOH HOH . C 3 HOH A 88 688 64 HOH HOH . C 3 HOH A 89 689 106 HOH HOH . C 3 HOH A 90 690 49 HOH HOH . C 3 HOH A 91 691 102 HOH HOH . C 3 HOH A 92 692 53 HOH HOH . C 3 HOH A 93 693 84 HOH HOH . C 3 HOH A 94 694 34 HOH HOH . C 3 HOH A 95 695 24 HOH HOH . C 3 HOH A 96 696 33 HOH HOH . C 3 HOH A 97 697 46 HOH HOH . C 3 HOH A 98 698 111 HOH HOH . C 3 HOH A 99 699 93 HOH HOH . C 3 HOH A 100 700 79 HOH HOH . C 3 HOH A 101 701 98 HOH HOH . C 3 HOH A 102 702 86 HOH HOH . C 3 HOH A 103 703 132 HOH HOH . C 3 HOH A 104 704 35 HOH HOH . C 3 HOH A 105 705 123 HOH HOH . C 3 HOH A 106 706 97 HOH HOH . C 3 HOH A 107 707 23 HOH HOH . C 3 HOH A 108 708 38 HOH HOH . C 3 HOH A 109 709 61 HOH HOH . C 3 HOH A 110 710 44 HOH HOH . C 3 HOH A 111 711 81 HOH HOH . C 3 HOH A 112 712 112 HOH HOH . C 3 HOH A 113 713 56 HOH HOH . C 3 HOH A 114 714 101 HOH HOH . C 3 HOH A 115 715 66 HOH HOH . C 3 HOH A 116 716 103 HOH HOH . C 3 HOH A 117 717 88 HOH HOH . C 3 HOH A 118 718 105 HOH HOH . C 3 HOH A 119 719 130 HOH HOH . C 3 HOH A 120 720 76 HOH HOH . C 3 HOH A 121 721 67 HOH HOH . C 3 HOH A 122 722 134 HOH HOH . C 3 HOH A 123 723 87 HOH HOH . C 3 HOH A 124 724 118 HOH HOH . C 3 HOH A 125 725 129 HOH HOH . C 3 HOH A 126 726 73 HOH HOH . C 3 HOH A 127 727 119 HOH HOH . C 3 HOH A 128 728 137 HOH HOH . C 3 HOH A 129 729 138 HOH HOH . C 3 HOH A 130 730 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 2.282 15.648 11.765 1 61.04 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 3.614 15.016 11.364 1 54.23 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 1.978 16.778 10.797 1 65.15 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 2.343 16.185 13.18 1 47.83 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 0.219 13.751 12.78 1 65.05 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -0.407 12.506 12.199 1 71.71 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 0.903 13.653 14.121 1 64.34 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 1.148 14.473 11.639 1 63.98 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -0.981 16.457 13.122 1 76.88 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -1.052 16.737 14.587 1 90.66 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 0.1 17.152 12.364 1 83.8 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -0.956 14.854 12.914 1 71.64 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -2.379 16.813 12.421 1 77.75 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -2.913 18.167 12.48 1 64.99 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -4.234 18.12 13.205 1 57.42 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -5.023 17.004 12.696 1 58.24 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -4.12 17.889 14.718 1 56.15 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -5.139 18.551 15.456 1 53.46 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -4.23 16.361 14.801 1 52.09 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -4.589 15.951 16.1 1 41.26 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -5.287 16.083 13.733 1 48.72 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -5.281 14.679 13.205 1 41.27 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -4.232 13.889 12.739 1 37.74 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -4.614 12.68 12.381 1 38.19 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -5.98 12.65 12.667 1 33.99 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -6.975 11.655 12.539 1 27.74 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -6.768 10.429 12.066 1 29.08 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -8.227 11.975 12.95 1 29.43 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -8.464 13.21 13.392 1 30.68 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -7.621 14.232 13.542 1 37.39 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -6.384 13.878 13.16 1 37.28 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 466 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #