data_8RRS # _model_server_result.job_id 4OsqJ8OQfkqy1Gnx6jh76w _model_server_result.datetime_utc '2024-10-10 04:17:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rrs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":5101}' # _entry.id 8RRS # _exptl.entry_id 8RRS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RRS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 Q N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 36 C CYS 36 1_555 C SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 36 E CYS 36 1_555 E SG CYS 65 E CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 F SG CYS 36 F CYS 36 1_555 F SG CYS 65 F CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 G SG CYS 22 G CYS 22 1_555 G SG CYS 95 G CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 H SG CYS 22 I CYS 22 1_555 H SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 3847 A GLU 3847 1_555 L CA CA . A CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc2 A OE1 GLU 3921 A GLU 3921 1_555 L CA CA . A CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? metalc ? metalc3 A OE2 GLU 3921 A GLU 3921 1_555 L CA CA . A CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc4 A SG CYS 4887 A CYS 4887 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 A SG CYS 4890 A CYS 4890 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 A NE2 HIS 4907 A HIS 4907 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc7 A ND1 HIS 4912 A HIS 4912 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc8 A O THR 4930 A THR 4930 1_555 L CA CA . A CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 C OE2 GLU 3847 C GLU 3847 1_555 P CA CA . C CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc10 C OE1 GLU 3921 C GLU 3921 1_555 P CA CA . C CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc11 C OE2 GLU 3921 C GLU 3921 1_555 P CA CA . C CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc12 C SG CYS 4887 C CYS 4887 1_555 O ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc13 C SG CYS 4890 C CYS 4890 1_555 O ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc14 C NE2 HIS 4907 C HIS 4907 1_555 O ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc15 C ND1 HIS 4912 C HIS 4912 1_555 O ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc16 C O THR 4930 C THR 4930 1_555 P CA CA . C CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc17 E OE2 GLU 3847 E GLU 3847 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc18 E OE1 GLU 3921 E GLU 3921 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? metalc ? metalc19 E OE2 GLU 3921 E GLU 3921 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc20 E SG CYS 4887 E CYS 4887 1_555 S ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc21 E SG CYS 4890 E CYS 4890 1_555 S ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc22 E NE2 HIS 4907 E HIS 4907 1_555 S ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc23 E ND1 HIS 4912 E HIS 4912 1_555 S ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc24 E O THR 4930 E THR 4930 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc25 F OE2 GLU 3847 F GLU 3847 1_555 X CA CA . F CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc26 F OE1 GLU 3921 F GLU 3921 1_555 X CA CA . F CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? metalc ? metalc27 F OE2 GLU 3921 F GLU 3921 1_555 X CA CA . F CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc28 F SG CYS 4887 F CYS 4887 1_555 W ZN ZN . F ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc29 F SG CYS 4890 F CYS 4890 1_555 W ZN ZN . F ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc30 F NE2 HIS 4907 F HIS 4907 1_555 W ZN ZN . F ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc31 F ND1 HIS 4912 F HIS 4912 1_555 W ZN ZN . F ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc32 F O THR 4930 F THR 4930 1_555 X CA CA . F CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8RRS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5101 5101 ATP ATP . J 4 CFF A 1 5102 5102 CFF CFF . K 5 ZN A 1 5103 6000 ZN ZN . L 6 CA A 1 5104 6001 CA CA . M 3 ATP C 1 5101 5101 ATP ATP . N 4 CFF C 1 5102 5102 CFF CFF . O 5 ZN C 1 5103 6000 ZN ZN . P 6 CA C 1 5104 6001 CA CA . Q 3 ATP E 1 5101 5101 ATP ATP . R 4 CFF E 1 5102 5102 CFF CFF . S 5 ZN E 1 5103 6000 ZN ZN . T 6 CA E 1 5104 6001 CA CA . U 3 ATP F 1 5101 5101 ATP ATP . V 4 CFF F 1 5102 5102 CFF CFF . W 5 ZN F 1 5103 6000 ZN ZN . X 6 CA F 1 5104 6001 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Q 3 216.501 239.653 182.638 1 93.39 0 PG ATP 5101 E 1 HETATM 2 O O1G ATP . . . Q 3 216.183 241.076 182.946 1 75.91 0 O1G ATP 5101 E 1 HETATM 3 O O2G ATP . . . Q 3 215.304 238.709 182.784 1 80.42 -1 O2G ATP 5101 E 1 HETATM 4 O O3G ATP . . . Q 3 217.136 239.45 181.259 1 78.19 0 O3G ATP 5101 E 1 HETATM 5 P PB ATP . . . Q 3 217.768 238.856 185.215 1 83.91 0 PB ATP 5101 E 1 HETATM 6 O O1B ATP . . . Q 3 218.056 237.444 185.531 1 73.74 -1 O1B ATP 5101 E 1 HETATM 7 O O2B ATP . . . Q 3 216.55 239.458 185.913 1 71.42 0 O2B ATP 5101 E 1 HETATM 8 O O3B ATP . . . Q 3 217.581 239.088 183.662 1 76.26 0 O3B ATP 5101 E 1 HETATM 9 P PA ATP . . . Q 3 219.823 240.237 186.816 1 94.18 0 PA ATP 5101 E 1 HETATM 10 O O1A ATP . . . Q 3 220.443 241.566 186.644 1 74.69 -1 O1A ATP 5101 E 1 HETATM 11 O O2A ATP . . . Q 3 218.878 240.108 188.009 1 80.18 0 O2A ATP 5101 E 1 HETATM 12 O O3A ATP . . . Q 3 219.006 239.802 185.534 1 79.91 0 O3A ATP 5101 E 1 HETATM 13 O O5' ATP . . . Q 3 220.91 239.098 186.921 1 78.52 0 O5' ATP 5101 E 1 HETATM 14 C C5' ATP . . . Q 3 222.316 239.393 186.792 1 77.05 0 C5' ATP 5101 E 1 HETATM 15 C C4' ATP . . . Q 3 222.92 239.421 188.171 1 74.53 0 C4' ATP 5101 E 1 HETATM 16 O O4' ATP . . . Q 3 222.65 240.689 188.794 1 68.52 0 O4' ATP 5101 E 1 HETATM 17 C C3' ATP . . . Q 3 222.347 238.409 189.151 1 70.74 0 C3' ATP 5101 E 1 HETATM 18 O O3' ATP . . . Q 3 222.949 237.132 188.975 1 81.13 0 O3' ATP 5101 E 1 HETATM 19 C C2' ATP . . . Q 3 222.713 239.025 190.504 1 66.86 0 C2' ATP 5101 E 1 HETATM 20 O O2' ATP . . . Q 3 223.991 238.591 190.952 1 76.54 0 O2' ATP 5101 E 1 HETATM 21 C C1' ATP . . . Q 3 222.736 240.531 190.2 1 62.91 0 C1' ATP 5101 E 1 HETATM 22 N N9 ATP . . . Q 3 221.646 241.271 190.819 1 63.13 0 N9 ATP 5101 E 1 HETATM 23 C C8 ATP . . . Q 3 220.333 241.307 190.43 1 72.81 0 C8 ATP 5101 E 1 HETATM 24 N N7 ATP . . . Q 3 219.571 242.058 191.187 1 69.19 0 N7 ATP 5101 E 1 HETATM 25 C C5 ATP . . . Q 3 220.445 242.549 192.145 1 61.37 0 C5 ATP 5101 E 1 HETATM 26 C C6 ATP . . . Q 3 220.266 243.408 193.245 1 59.52 0 C6 ATP 5101 E 1 HETATM 27 N N6 ATP . . . Q 3 219.094 243.951 193.58 1 68.02 0 N6 ATP 5101 E 1 HETATM 28 N N1 ATP . . . Q 3 221.345 243.696 193.999 1 56.44 0 N1 ATP 5101 E 1 HETATM 29 C C2 ATP . . . Q 3 222.52 243.156 193.67 1 62.1 0 C2 ATP 5101 E 1 HETATM 30 N N3 ATP . . . Q 3 222.812 242.339 192.658 1 57.95 0 N3 ATP 5101 E 1 HETATM 31 C C4 ATP . . . Q 3 221.726 242.07 191.931 1 59.69 0 C4 ATP 5101 E 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 186 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #