data_8RRT
#
_model_server_result.job_id            T-GHTjD80hh5b0pIRaNoWw 
_model_server_result.datetime_utc      '2024-10-10 04:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rrt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":5102}' 
#
_entry.id    8RRT 
#
_exptl.entry_id    8RRT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RRT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    12-meric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 R N N 
? 5 V N N 
? 5 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 220 B CYS 230 1_555 A SG CYS 243 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 220 E CYS 230 1_555 B SG CYS 243 E CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 220 G CYS 230 1_555 C SG CYS 243 G CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 220 J CYS 230 1_555 D SG CYS 243 J CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 I SG CYS 22 C CYS 22 1_555 I SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 J SG CYS 22 F CYS 22 1_555 J SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 K SG CYS 22 K CYS 22 1_555 K SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 L SG CYS 22 M CYS 22 1_555 L SG CYS 95 M CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A OE2 GLU 3883 B GLU 3893 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc2 A SG CYS 4948 B CYS 4958 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc3 A SG CYS 4951 B CYS 4961 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 A NE2 HIS 4968 B HIS 4978 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc5 A ND1 HIS 4973 B HIS 4983 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc6 A O THR 4991 B THR 5001 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc7 B OE2 GLU 3883 E GLU 3893 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc8 B SG CYS 4948 E CYS 4958 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc9 B SG CYS 4951 E CYS 4961 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc10 B NE2 HIS 4968 E HIS 4978 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc11 B ND1 HIS 4973 E HIS 4983 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc12 B O THR 4991 E THR 5001 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc13 C OE2 GLU 3883 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc14 C SG CYS 4948 G CYS 4958 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc15 C SG CYS 4951 G CYS 4961 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc16 C NE2 HIS 4968 G HIS 4978 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc17 C ND1 HIS 4973 G HIS 4983 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc18 C O THR 4991 G THR 5001 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc19 D OE2 GLU 3883 J GLU 3893 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc20 D SG CYS 4948 J CYS 4958 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc21 D SG CYS 4951 J CYS 4961 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc22 D NE2 HIS 4968 J HIS 4978 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc23 D ND1 HIS 4973 J HIS 4983 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc24 D O THR 4991 J THR 5001 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8RRT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 ZN B 1 5101 1 ZN ZN . 
N 5 ATP B 1 5102 5103 ATP ATP . 
O 6 CFF B 1 5103 5104 CFF CFF . 
P 7 CA B 1 5104 5105 CA CA . 
Q 4 ZN E 1 5101 1 ZN ZN . 
R 5 ATP E 1 5102 5103 ATP ATP . 
S 6 CFF E 1 5103 5104 CFF CFF . 
T 7 CA E 1 5104 5105 CA CA . 
U 4 ZN G 1 5101 1 ZN ZN . 
V 5 ATP G 1 5102 5103 ATP ATP . 
W 6 CFF G 1 5103 5104 CFF CFF . 
X 7 CA G 1 5104 5105 CA CA . 
Y 4 ZN J 1 5101 1 ZN ZN . 
Z 5 ATP J 1 5102 5103 ATP ATP . 
AA 6 CFF J 1 5103 5104 CFF CFF . 
BA 7 CA J 1 5104 5105 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Z 5 272.769 271.347 286.373 1 360.18 0 PG ATP 5102 J 1 
HETATM 2 O O1G ATP . . . Z 5 272.056 272.655 286.312 1 360.18 0 O1G ATP 5102 J 1 
HETATM 3 O O2G ATP . . . Z 5 274.296 271.477 286.368 1 360.18 -1 O2G ATP 5102 J 1 
HETATM 4 O O3G ATP . . . Z 5 272.345 270.47 287.557 1 360.18 0 O3G ATP 5102 J 1 
HETATM 5 P PB ATP . . . Z 5 273.024 270.157 283.636 1 360.18 0 PB ATP 5102 J 1 
HETATM 6 O O1B ATP . . . Z 5 273.158 271.383 282.822 1 360.18 -1 O1B ATP 5102 J 1 
HETATM 7 O O2B ATP . . . Z 5 274.305 269.346 283.83 1 360.18 0 O2B ATP 5102 J 1 
HETATM 8 O O3B ATP . . . Z 5 272.437 270.465 285.082 1 360.18 0 O3B ATP 5102 J 1 
HETATM 9 P PA ATP . . . Z 5 271.701 268.358 281.696 1 360.18 0 PA ATP 5102 J 1 
HETATM 10 O O1A ATP . . . Z 5 272.763 267.355 281.481 1 360.18 -1 O1A ATP 5102 J 1 
HETATM 11 O O2A ATP . . . Z 5 271.546 269.386 280.574 1 360.18 0 O2A ATP 5102 J 1 
HETATM 12 O O3A ATP . . . Z 5 271.925 269.17 283.044 1 360.18 0 O3A ATP 5102 J 1 
HETATM 13 O O5' ATP . . . Z 5 270.301 267.668 281.932 1 360.18 0 O5' ATP 5102 J 1 
HETATM 14 C C5' ATP . . . Z 5 269.124 268.094 281.213 1 360.18 0 C5' ATP 5102 J 1 
HETATM 15 C C4' ATP . . . Z 5 268.731 267.014 280.238 1 360.18 0 C4' ATP 5102 J 1 
HETATM 16 O O4' ATP . . . Z 5 267.533 267.408 279.54 1 360.18 0 O4' ATP 5102 J 1 
HETATM 17 C C3' ATP . . . Z 5 269.739 266.738 279.13 1 360.18 0 C3' ATP 5102 J 1 
HETATM 18 O O3' ATP . . . Z 5 270.754 265.843 279.572 1 360.18 0 O3' ATP 5102 J 1 
HETATM 19 C C2' ATP . . . Z 5 268.865 266.114 278.038 1 360.18 0 C2' ATP 5102 J 1 
HETATM 20 O O2' ATP . . . Z 5 268.744 264.706 278.199 1 360.18 0 O2' ATP 5102 J 1 
HETATM 21 C C1' ATP . . . Z 5 267.509 266.802 278.258 1 360.18 0 C1' ATP 5102 J 1 
HETATM 22 N N9 ATP . . . Z 5 267.181 267.823 277.267 1 360.18 0 N9 ATP 5102 J 1 
HETATM 23 C C8 ATP . . . Z 5 266.192 267.759 276.321 1 360.18 0 C8 ATP 5102 J 1 
HETATM 24 N N7 ATP . . . Z 5 266.114 268.819 275.554 1 360.18 0 N7 ATP 5102 J 1 
HETATM 25 C C5 ATP . . . Z 5 267.122 269.643 276.031 1 360.18 0 C5 ATP 5102 J 1 
HETATM 26 C C6 ATP . . . Z 5 267.565 270.923 275.645 1 360.18 0 C6 ATP 5102 J 1 
HETATM 27 N N6 ATP . . . Z 5 267.024 271.628 274.646 1 360.18 0 N6 ATP 5102 J 1 
HETATM 28 N N1 ATP . . . Z 5 268.598 271.463 276.329 1 360.18 0 N1 ATP 5102 J 1 
HETATM 29 C C2 ATP . . . Z 5 269.143 270.765 277.327 1 360.18 0 C2 ATP 5102 J 1 
HETATM 30 N N3 ATP . . . Z 5 268.811 269.554 277.78 1 360.18 0 N3 ATP 5102 J 1 
HETATM 31 C C4 ATP . . . Z 5 267.789 269.042 277.087 1 360.18 0 C4 ATP 5102 J 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    184 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#