data_8RRU # _model_server_result.job_id YqBhkrtRSOWyzHhDtixiPw _model_server_result.datetime_utc '2024-10-10 04:18:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":5104}' # _entry.id 8RRU # _exptl.entry_id 8RRU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RRU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 P N N ? 7 T N N ? 7 X N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 4866 B CYS 4876 1_555 E SG CYS 4872 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 4866 E CYS 4876 1_555 F SG CYS 4872 E CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 G SG CYS 4866 G CYS 4876 1_555 G SG CYS 4872 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 H SG CYS 4866 J CYS 4876 1_555 H SG CYS 4872 J CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 I SG CYS 22 C CYS 22 1_555 I SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 J SG CYS 22 F CYS 22 1_555 J SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 K SG CYS 22 K CYS 22 1_555 K SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 L SG CYS 22 M CYS 22 1_555 L SG CYS 95 M CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 E OE2 GLU 3883 B GLU 3893 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 E OE2 GLU 3957 B GLU 3967 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 E SG CYS 4948 B CYS 4958 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 E NE2 HIS 4968 B HIS 4978 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 E ND1 HIS 4973 B HIS 4983 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 E O THR 4991 B THR 5001 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc7 F OE2 GLU 3883 E GLU 3893 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc8 F OE2 GLU 3957 E GLU 3967 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc9 F SG CYS 4948 E CYS 4958 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 F NE2 HIS 4968 E HIS 4978 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc11 F ND1 HIS 4973 E HIS 4983 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 F O THR 4991 E THR 5001 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc13 G OE2 GLU 3883 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc14 G OE2 GLU 3957 G GLU 3967 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc15 G SG CYS 4948 G CYS 4958 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc16 G NE2 HIS 4968 G HIS 4978 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc17 G ND1 HIS 4973 G HIS 4983 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc18 G O THR 4991 G THR 5001 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc19 H OE2 GLU 3883 J GLU 3893 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc20 H OE2 GLU 3957 J GLU 3967 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc21 H SG CYS 4948 J CYS 4958 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc22 H NE2 HIS 4968 J HIS 4978 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc23 H ND1 HIS 4973 J HIS 4983 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc24 H O THR 4991 J THR 5001 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RRU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN B 1 5101 5106 ZN ZN . N 5 ATP B 1 5102 5103 ATP ATP . O 6 CFF B 1 5103 5104 CFF CFF . P 7 CA B 1 5104 5105 CA CA . Q 4 ZN E 1 5101 5106 ZN ZN . R 5 ATP E 1 5102 5103 ATP ATP . S 6 CFF E 1 5103 5104 CFF CFF . T 7 CA E 1 5104 5105 CA CA . U 4 ZN G 1 5101 5106 ZN ZN . V 5 ATP G 1 5102 5103 ATP ATP . W 6 CFF G 1 5103 5104 CFF CFF . X 7 CA G 1 5104 5105 CA CA . Y 4 ZN J 1 5101 5106 ZN ZN . Z 5 ATP J 1 5102 5103 ATP ATP . AA 6 CFF J 1 5103 5104 CFF CFF . BA 7 CA J 1 5104 5105 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 7 _atom_site.Cartn_x 209.016 _atom_site.Cartn_y 268.509 _atom_site.Cartn_z 265.376 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 249.7 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5104 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 180 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #