data_8RRX # _model_server_result.job_id xJMP_qByWJZu7H_rzViA3w _model_server_result.datetime_utc '2024-10-10 02:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":5101}' # _entry.id 8RRX # _exptl.entry_id 8RRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 S N N ? 4 W N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 4866 I CYS 4876 1_555 B SG CYS 4872 I CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 C SG CYS 22 K CYS 22 1_555 C SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 4866 A CYS 4876 1_555 E SG CYS 4872 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 F SG CYS 22 C CYS 22 1_555 F SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 H SG CYS 4866 D CYS 4876 1_555 H SG CYS 4872 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 I SG CYS 22 E CYS 22 1_555 I SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 K SG CYS 4866 G CYS 4876 1_555 K SG CYS 4872 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 L SG CYS 22 M CYS 22 1_555 L SG CYS 95 M CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 B OE2 GLU 3883 I GLU 3893 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc2 B OE1 GLU 3957 I GLU 3967 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 B OE2 GLU 3957 I GLU 3967 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 B SG CYS 4948 I CYS 4958 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 B SG CYS 4951 I CYS 4961 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 B NE2 HIS 4968 I HIS 4978 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 B ND1 HIS 4973 I HIS 4983 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc8 B O THR 4991 I THR 5001 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc9 E OE2 GLU 3883 A GLU 3893 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc10 E OE2 GLU 3957 A GLU 3967 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 E SG CYS 4948 A CYS 4958 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 E SG CYS 4951 A CYS 4961 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc13 E NE2 HIS 4968 A HIS 4978 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc14 E ND1 HIS 4973 A HIS 4983 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc15 E O THR 4991 A THR 5001 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc16 H OE2 GLU 3883 D GLU 3893 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc17 H OE2 GLU 3957 D GLU 3967 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc18 H SG CYS 4948 D CYS 4958 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 H SG CYS 4951 D CYS 4961 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 H NE2 HIS 4968 D HIS 4978 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc21 H ND1 HIS 4973 D HIS 4983 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc22 H O THR 4991 D THR 5001 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc23 K OE2 GLU 3883 G GLU 3893 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc24 K OE2 GLU 3957 G GLU 3967 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc25 K SG CYS 4948 G CYS 4958 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc26 K SG CYS 4951 G CYS 4961 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc27 K NE2 HIS 4968 G HIS 4978 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc28 K ND1 HIS 4973 G HIS 4983 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc29 K O THR 4991 G THR 5001 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN I 1 5101 1 ZN ZN . N 5 POV I 1 5102 5101 POV POV . O 6 ATP I 1 5103 5103 ATP ATP . P 7 CFF I 1 5104 5104 CFF CFF . Q 8 CA I 1 5105 5105 CA CA . R 5 POV A 1 5101 5101 POV POV . S 4 ZN A 1 5102 1 ZN ZN . T 6 ATP A 1 5103 5103 ATP ATP . U 7 CFF A 1 5104 5104 CFF CFF . V 8 CA A 1 5105 5105 CA CA . W 4 ZN D 1 5101 1 ZN ZN . X 5 POV D 1 5102 5101 POV POV . Y 6 ATP D 1 5103 5103 ATP ATP . Z 7 CFF D 1 5104 5104 CFF CFF . AA 8 CA D 1 5105 5105 CA CA . BA 4 ZN G 1 5101 1 ZN ZN . CA 5 POV G 1 5102 5101 POV POV . DA 6 ATP G 1 5103 5103 ATP ATP . EA 7 CFF G 1 5104 5104 CFF CFF . FA 8 CA G 1 5105 5105 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 237.52 _atom_site.Cartn_y 258.515 _atom_site.Cartn_z 294.57 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.22 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 5101 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 393 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 58 _model_server_stats.element_count 1 #