data_8RRX # _model_server_result.job_id 0uPZ5Mlr9ID-AUlveas3DQ _model_server_result.datetime_utc '2024-10-10 02:25:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5103}' # _entry.id 8RRX # _exptl.entry_id 8RRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 T N N ? 6 Y N N ? 6 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 4866 I CYS 4876 1_555 B SG CYS 4872 I CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 C SG CYS 22 K CYS 22 1_555 C SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 4866 A CYS 4876 1_555 E SG CYS 4872 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 F SG CYS 22 C CYS 22 1_555 F SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 H SG CYS 4866 D CYS 4876 1_555 H SG CYS 4872 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 I SG CYS 22 E CYS 22 1_555 I SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 K SG CYS 4866 G CYS 4876 1_555 K SG CYS 4872 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 L SG CYS 22 M CYS 22 1_555 L SG CYS 95 M CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 B OE2 GLU 3883 I GLU 3893 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc2 B OE1 GLU 3957 I GLU 3967 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 B OE2 GLU 3957 I GLU 3967 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 B SG CYS 4948 I CYS 4958 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 B SG CYS 4951 I CYS 4961 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 B NE2 HIS 4968 I HIS 4978 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 B ND1 HIS 4973 I HIS 4983 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc8 B O THR 4991 I THR 5001 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc9 E OE2 GLU 3883 A GLU 3893 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc10 E OE2 GLU 3957 A GLU 3967 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 E SG CYS 4948 A CYS 4958 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 E SG CYS 4951 A CYS 4961 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc13 E NE2 HIS 4968 A HIS 4978 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc14 E ND1 HIS 4973 A HIS 4983 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc15 E O THR 4991 A THR 5001 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc16 H OE2 GLU 3883 D GLU 3893 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc17 H OE2 GLU 3957 D GLU 3967 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc18 H SG CYS 4948 D CYS 4958 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 H SG CYS 4951 D CYS 4961 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 H NE2 HIS 4968 D HIS 4978 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc21 H ND1 HIS 4973 D HIS 4983 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc22 H O THR 4991 D THR 5001 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc23 K OE2 GLU 3883 G GLU 3893 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc24 K OE2 GLU 3957 G GLU 3967 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc25 K SG CYS 4948 G CYS 4958 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc26 K SG CYS 4951 G CYS 4961 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc27 K NE2 HIS 4968 G HIS 4978 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc28 K ND1 HIS 4973 G HIS 4983 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc29 K O THR 4991 G THR 5001 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8RRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN I 1 5101 1 ZN ZN . N 5 POV I 1 5102 5101 POV POV . O 6 ATP I 1 5103 5103 ATP ATP . P 7 CFF I 1 5104 5104 CFF CFF . Q 8 CA I 1 5105 5105 CA CA . R 5 POV A 1 5101 5101 POV POV . S 4 ZN A 1 5102 1 ZN ZN . T 6 ATP A 1 5103 5103 ATP ATP . U 7 CFF A 1 5104 5104 CFF CFF . V 8 CA A 1 5105 5105 CA CA . W 4 ZN D 1 5101 1 ZN ZN . X 5 POV D 1 5102 5101 POV POV . Y 6 ATP D 1 5103 5103 ATP ATP . Z 7 CFF D 1 5104 5104 CFF CFF . AA 8 CA D 1 5105 5105 CA CA . BA 4 ZN G 1 5101 1 ZN ZN . CA 5 POV G 1 5102 5101 POV POV . DA 6 ATP G 1 5103 5103 ATP ATP . EA 7 CFF G 1 5104 5104 CFF CFF . FA 8 CA G 1 5105 5105 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 6 232.305 266.444 310.57 1 96.76 0 PG ATP 5103 I 1 HETATM 2 O O1G ATP . . . O 6 233.029 265.18 310.966 1 81.64 0 O1G ATP 5103 I 1 HETATM 3 O O2G ATP . . . O 6 230.849 266.247 310.226 1 82.77 -1 O2G ATP 5103 I 1 HETATM 4 O O3G ATP . . . O 6 232.581 267.629 311.463 1 83.45 0 O3G ATP 5103 I 1 HETATM 5 P PB ATP . . . O 6 232.606 266.024 307.843 1 97.85 0 PB ATP 5103 I 1 HETATM 6 O O1B ATP . . . O 6 232.339 264.591 308.231 1 86.09 -1 O1B ATP 5103 I 1 HETATM 7 O O2B ATP . . . O 6 231.564 266.808 307.082 1 76.72 0 O2B ATP 5103 I 1 HETATM 8 O O3B ATP . . . O 6 232.983 266.846 309.171 1 84.55 0 O3B ATP 5103 I 1 HETATM 9 P PA ATP . . . O 6 233.967 265.673 305.45 1 98.56 0 PA ATP 5103 I 1 HETATM 10 O O1A ATP . . . O 6 233.934 266.949 304.645 1 81.75 -1 O1A ATP 5103 I 1 HETATM 11 O O2A ATP . . . O 6 232.91 264.618 305.234 1 84.01 0 O2A ATP 5103 I 1 HETATM 12 O O3A ATP . . . O 6 233.978 266.064 307.008 1 87.07 0 O3A ATP 5103 I 1 HETATM 13 O O5' ATP . . . O 6 235.407 264.988 305.252 1 81.54 0 O5' ATP 5103 I 1 HETATM 14 C C5' ATP . . . O 6 236.24 265.378 304.166 1 76.3 0 C5' ATP 5103 I 1 HETATM 15 C C4' ATP . . . O 6 237.438 264.447 304.116 1 70.66 0 C4' ATP 5103 I 1 HETATM 16 O O4' ATP . . . O 6 237.037 263.121 303.77 1 73.03 0 O4' ATP 5103 I 1 HETATM 17 C C3' ATP . . . O 6 238.442 264.884 303.068 1 76.62 0 C3' ATP 5103 I 1 HETATM 18 O O3' ATP . . . O 6 239.548 265.546 303.681 1 80.74 0 O3' ATP 5103 I 1 HETATM 19 C C2' ATP . . . O 6 238.883 263.613 302.38 1 80.69 0 C2' ATP 5103 I 1 HETATM 20 O O2' ATP . . . O 6 240.283 263.394 302.553 1 87.32 0 O2' ATP 5103 I 1 HETATM 21 C C1' ATP . . . O 6 238.092 262.499 303.036 1 76.21 0 C1' ATP 5103 I 1 HETATM 22 N N9 ATP . . . O 6 237.588 261.6 301.975 1 72.77 0 N9 ATP 5103 I 1 HETATM 23 C C8 ATP . . . O 6 238.319 260.645 301.378 1 75.3 0 C8 ATP 5103 I 1 HETATM 24 N N7 ATP . . . O 6 237.592 259.99 300.444 1 74.25 0 N7 ATP 5103 I 1 HETATM 25 C C5 ATP . . . O 6 236.366 260.535 300.434 1 66.07 0 C5 ATP 5103 I 1 HETATM 26 C C6 ATP . . . O 6 235.118 260.307 299.681 1 67.67 0 C6 ATP 5103 I 1 HETATM 27 N N6 ATP . . . O 6 235.051 259.34 298.737 1 73.97 0 N6 ATP 5103 I 1 HETATM 28 N N1 ATP . . . O 6 234.059 261.091 299.97 1 68.43 0 N1 ATP 5103 I 1 HETATM 29 C C2 ATP . . . O 6 234.127 262.05 300.91 1 65.71 0 C2 ATP 5103 I 1 HETATM 30 N N3 ATP . . . O 6 235.23 262.309 301.631 1 66.89 0 N3 ATP 5103 I 1 HETATM 31 C C4 ATP . . . O 6 236.365 261.599 301.443 1 67.08 0 C4 ATP 5103 I 1 # _model_server_stats.io_time_ms 160 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 169 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #