data_8RRX # _model_server_result.job_id qmBMcbR_6BWme3bl72HB_Q _model_server_result.datetime_utc '2024-10-10 02:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":5104}' # _entry.id 8RRX # _exptl.entry_id 8RRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 194.191 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 P N N ? 7 U N N ? 7 Z N N ? 7 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 4866 I CYS 4876 1_555 B SG CYS 4872 I CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 C SG CYS 22 K CYS 22 1_555 C SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 4866 A CYS 4876 1_555 E SG CYS 4872 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 F SG CYS 22 C CYS 22 1_555 F SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 H SG CYS 4866 D CYS 4876 1_555 H SG CYS 4872 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 I SG CYS 22 E CYS 22 1_555 I SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 K SG CYS 4866 G CYS 4876 1_555 K SG CYS 4872 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 L SG CYS 22 M CYS 22 1_555 L SG CYS 95 M CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 B OE2 GLU 3883 I GLU 3893 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc2 B OE1 GLU 3957 I GLU 3967 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 B OE2 GLU 3957 I GLU 3967 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 B SG CYS 4948 I CYS 4958 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 B SG CYS 4951 I CYS 4961 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 B NE2 HIS 4968 I HIS 4978 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 B ND1 HIS 4973 I HIS 4983 1_555 M ZN ZN . I ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc8 B O THR 4991 I THR 5001 1_555 Q CA CA . I CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc9 E OE2 GLU 3883 A GLU 3893 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc10 E OE2 GLU 3957 A GLU 3967 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 E SG CYS 4948 A CYS 4958 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 E SG CYS 4951 A CYS 4961 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc13 E NE2 HIS 4968 A HIS 4978 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc14 E ND1 HIS 4973 A HIS 4983 1_555 S ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc15 E O THR 4991 A THR 5001 1_555 V CA CA . A CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc16 H OE2 GLU 3883 D GLU 3893 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc17 H OE2 GLU 3957 D GLU 3967 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc18 H SG CYS 4948 D CYS 4958 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 H SG CYS 4951 D CYS 4961 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 H NE2 HIS 4968 D HIS 4978 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc21 H ND1 HIS 4973 D HIS 4983 1_555 W ZN ZN . D ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc22 H O THR 4991 D THR 5001 1_555 AA CA CA . D CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc23 K OE2 GLU 3883 G GLU 3893 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc24 K OE2 GLU 3957 G GLU 3967 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc25 K SG CYS 4948 G CYS 4958 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc26 K SG CYS 4951 G CYS 4961 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc27 K NE2 HIS 4968 G HIS 4978 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc28 K ND1 HIS 4973 G HIS 4983 1_555 BA ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc29 K O THR 4991 G THR 5001 1_555 FA CA CA . G CA 5105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CFF sing 119 n y N1 C10 CFF sing 120 n n N1 C6 CFF sing 121 n y C2 N3 CFF sing 122 n y C2 O11 CFF doub 123 n n C10 H101 CFF sing 124 n n C10 H102 CFF sing 125 n n C10 H103 CFF sing 126 n n C6 C5 CFF sing 127 n y C6 O13 CFF doub 128 n n N3 C12 CFF sing 129 n n N3 C4 CFF sing 130 n y C12 H121 CFF sing 131 n n C12 H122 CFF sing 132 n n C12 H123 CFF sing 133 n n C4 C5 CFF doub 134 n y C4 N9 CFF sing 135 n y C5 N7 CFF sing 136 n y N9 C8 CFF doub 137 n y N7 C8 CFF sing 138 n y N7 C14 CFF sing 139 n n C8 H81 CFF sing 140 n n C14 H141 CFF sing 141 n n C14 H142 CFF sing 142 n n C14 H143 CFF sing 143 n n # _atom_sites.entry_id 8RRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN I 1 5101 1 ZN ZN . N 5 POV I 1 5102 5101 POV POV . O 6 ATP I 1 5103 5103 ATP ATP . P 7 CFF I 1 5104 5104 CFF CFF . Q 8 CA I 1 5105 5105 CA CA . R 5 POV A 1 5101 5101 POV POV . S 4 ZN A 1 5102 1 ZN ZN . T 6 ATP A 1 5103 5103 ATP ATP . U 7 CFF A 1 5104 5104 CFF CFF . V 8 CA A 1 5105 5105 CA CA . W 4 ZN D 1 5101 1 ZN ZN . X 5 POV D 1 5102 5101 POV POV . Y 6 ATP D 1 5103 5103 ATP ATP . Z 7 CFF D 1 5104 5104 CFF CFF . AA 8 CA D 1 5105 5105 CA CA . BA 4 ZN G 1 5101 1 ZN ZN . CA 5 POV G 1 5102 5101 POV POV . DA 6 ATP G 1 5103 5103 ATP ATP . EA 7 CFF G 1 5104 5104 CFF CFF . FA 8 CA G 1 5105 5105 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . EA 7 248.204 296.301 299.331 1 83.86 0 N1 CFF 5104 G 1 HETATM 2 C C2 CFF . . . EA 7 248.347 297.704 299.506 1 81.79 0 C2 CFF 5104 G 1 HETATM 3 C C10 CFF . . . EA 7 247.435 295.787 298.198 1 82.34 0 C10 CFF 5104 G 1 HETATM 4 C C6 CFF . . . EA 7 248.791 295.394 300.237 1 82.42 0 C6 CFF 5104 G 1 HETATM 5 N N3 CFF . . . EA 7 249.078 298.263 300.584 1 76.63 0 N3 CFF 5104 G 1 HETATM 6 O O11 CFF . . . EA 7 247.81 298.47 298.68 1 83.83 0 O11 CFF 5104 G 1 HETATM 7 C C12 CFF . . . EA 7 249.205 299.713 300.734 1 76.96 0 C12 CFF 5104 G 1 HETATM 8 C C4 CFF . . . EA 7 249.648 297.446 301.462 1 77.77 0 C4 CFF 5104 G 1 HETATM 9 C C5 CFF . . . EA 7 249.547 296 301.351 1 82.12 0 C5 CFF 5104 G 1 HETATM 10 N N9 CFF . . . EA 7 250.382 297.711 302.552 1 75.06 0 N9 CFF 5104 G 1 HETATM 11 O O13 CFF . . . EA 7 248.677 294.159 300.099 1 84.43 0 O13 CFF 5104 G 1 HETATM 12 N N7 CFF . . . EA 7 250.217 295.47 302.369 1 84.38 0 N7 CFF 5104 G 1 HETATM 13 C C8 CFF . . . EA 7 250.716 296.501 303.087 1 79.6 0 C8 CFF 5104 G 1 HETATM 14 C C14 CFF . . . EA 7 250.389 294.027 302.666 1 84.04 0 C14 CFF 5104 G 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 173 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #