data_8RS0 # _model_server_result.job_id 7oSHjqtmNV_ZGuDjsLVeQA _model_server_result.datetime_utc '2024-10-16 11:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rs0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":5102}' # _entry.id 8RS0 # _exptl.entry_id 8RS0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RS0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 R N N ? 5 V N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 4866 B CYS 4876 1_555 E SG CYS 4872 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 4866 E CYS 4876 1_555 F SG CYS 4872 E CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 G SG CYS 4866 G CYS 4876 1_555 G SG CYS 4872 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 H SG CYS 4866 J CYS 4876 1_555 H SG CYS 4872 J CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 I SG CYS 22 C CYS 22 1_555 I SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 J SG CYS 22 F CYS 22 1_555 J SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 K SG CYS 22 K CYS 22 1_555 K SG CYS 95 K CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 L SG CYS 22 M CYS 22 1_555 L SG CYS 95 M CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 E OE2 GLU 3883 B GLU 3893 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 E OE1 GLU 3957 B GLU 3967 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc3 E OE1 GLN 3960 B GLN 3970 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? metalc ? metalc4 E SG CYS 4948 B CYS 4958 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 E SG CYS 4951 B CYS 4961 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 E NE2 HIS 4968 B HIS 4978 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 E ND1 HIS 4973 B HIS 4983 1_555 M ZN ZN . B ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc8 E O THR 4991 B THR 5001 1_555 P CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc9 F OE2 GLU 3883 E GLU 3893 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc10 F OE1 GLU 3957 E GLU 3967 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc11 F OE1 GLN 3960 E GLN 3970 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? metalc ? metalc12 F SG CYS 4948 E CYS 4958 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc13 F SG CYS 4951 E CYS 4961 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc14 F NE2 HIS 4968 E HIS 4978 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc15 F ND1 HIS 4973 E HIS 4983 1_555 Q ZN ZN . E ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc16 F O THR 4991 E THR 5001 1_555 T CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc17 G OE2 GLU 3883 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc18 G OE1 GLU 3957 G GLU 3967 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc19 G OE1 GLN 3960 G GLN 3970 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc20 G SG CYS 4948 G CYS 4958 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc21 G SG CYS 4951 G CYS 4961 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc22 G NE2 HIS 4968 G HIS 4978 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc23 G ND1 HIS 4973 G HIS 4983 1_555 U ZN ZN . G ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc24 G O THR 4991 G THR 5001 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc25 H OE2 GLU 3883 J GLU 3893 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc26 H OE1 GLU 3957 J GLU 3967 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc27 H SG CYS 4948 J CYS 4958 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc28 H SG CYS 4951 J CYS 4961 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc29 H NE2 HIS 4968 J HIS 4978 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc30 H ND1 HIS 4973 J HIS 4983 1_555 Y ZN ZN . J ZN 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc31 H O THR 4991 J THR 5001 1_555 BA CA CA . J CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8RS0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN B 1 5101 1 ZN ZN . N 5 ATP B 1 5102 5103 ATP ATP . O 6 CFF B 1 5103 5104 CFF CFF . P 7 CA B 1 5104 5105 CA CA . Q 4 ZN E 1 5101 1 ZN ZN . R 5 ATP E 1 5102 5103 ATP ATP . S 6 CFF E 1 5103 5104 CFF CFF . T 7 CA E 1 5104 5105 CA CA . U 4 ZN G 1 5101 1 ZN ZN . V 5 ATP G 1 5102 5103 ATP ATP . W 6 CFF G 1 5103 5104 CFF CFF . X 7 CA G 1 5104 5105 CA CA . Y 4 ZN J 1 5101 1 ZN ZN . Z 5 ATP J 1 5102 5103 ATP ATP . AA 6 CFF J 1 5103 5104 CFF CFF . BA 7 CA J 1 5104 5105 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Z 5 265.009 271.597 181.773 1 116.06 0 PG ATP 5102 J 1 HETATM 2 O O1G ATP . . . Z 5 266.223 270.74 181.893 1 102.93 0 O1G ATP 5102 J 1 HETATM 3 O O2G ATP . . . Z 5 265.31 273.098 181.818 1 101.82 -1 O2G ATP 5102 J 1 HETATM 4 O O3G ATP . . . Z 5 264.16 271.294 180.533 1 102.89 0 O3G ATP 5102 J 1 HETATM 5 P PB ATP . . . Z 5 263.47 272.107 184.284 1 112.83 0 PB ATP 5102 J 1 HETATM 6 O O1B ATP . . . Z 5 264.543 272.817 185.008 1 97.55 -1 O1B ATP 5102 J 1 HETATM 7 O O2B ATP . . . Z 5 262.288 272.965 183.831 1 101.16 0 O2B ATP 5102 J 1 HETATM 8 O O3B ATP . . . Z 5 264.024 271.35 183.003 1 105.17 0 O3B ATP 5102 J 1 HETATM 9 P PA ATP . . . Z 5 263.398 269.961 186.313 1 114.01 0 PA ATP 5102 J 1 HETATM 10 O O1A ATP . . . Z 5 263.465 270.694 187.593 1 103.66 -1 O1A ATP 5102 J 1 HETATM 11 O O2A ATP . . . Z 5 264.72 269.349 185.849 1 101.87 0 O2A ATP 5102 J 1 HETATM 12 O O3A ATP . . . Z 5 262.885 270.9 185.14 1 103.62 0 O3A ATP 5102 J 1 HETATM 13 O O5' ATP . . . Z 5 262.313 268.815 186.36 1 96.81 0 O5' ATP 5102 J 1 HETATM 14 C C5' ATP . . . Z 5 262.692 267.433 186.53 1 95.22 0 C5' ATP 5102 J 1 HETATM 15 C C4' ATP . . . Z 5 261.749 266.792 187.516 1 92.52 0 C4' ATP 5102 J 1 HETATM 16 O O4' ATP . . . Z 5 262.471 265.857 188.333 1 97.93 0 O4' ATP 5102 J 1 HETATM 17 C C3' ATP . . . Z 5 261.108 267.749 188.514 1 90.31 0 C3' ATP 5102 J 1 HETATM 18 O O3' ATP . . . Z 5 259.9 268.289 187.991 1 91.77 0 O3' ATP 5102 J 1 HETATM 19 C C2' ATP . . . Z 5 260.846 266.862 189.744 1 95.61 0 C2' ATP 5102 J 1 HETATM 20 O O2' ATP . . . Z 5 259.468 266.528 189.87 1 98.86 0 O2' ATP 5102 J 1 HETATM 21 C C1' ATP . . . Z 5 261.684 265.602 189.476 1 97.45 0 C1' ATP 5102 J 1 HETATM 22 N N9 ATP . . . Z 5 262.569 265.227 190.574 1 95.14 0 N9 ATP 5102 J 1 HETATM 23 C C8 ATP . . . Z 5 262.422 264.162 191.423 1 96.36 0 C8 ATP 5102 J 1 HETATM 24 N N7 ATP . . . Z 5 263.368 264.061 192.324 1 94.84 0 N7 ATP 5102 J 1 HETATM 25 C C5 ATP . . . Z 5 264.199 265.136 192.048 1 83.98 0 C5 ATP 5102 J 1 HETATM 26 C C6 ATP . . . Z 5 265.39 265.594 192.645 1 87.32 0 C6 ATP 5102 J 1 HETATM 27 N N6 ATP . . . Z 5 265.975 264.999 193.689 1 93.63 0 N6 ATP 5102 J 1 HETATM 28 N N1 ATP . . . Z 5 265.968 266.7 192.126 1 92.67 0 N1 ATP 5102 J 1 HETATM 29 C C2 ATP . . . Z 5 265.389 267.299 191.083 1 89.24 0 C2 ATP 5102 J 1 HETATM 30 N N3 ATP . . . Z 5 264.269 266.96 190.439 1 86.95 0 N3 ATP 5102 J 1 HETATM 31 C C4 ATP . . . Z 5 263.719 265.864 190.972 1 87.03 0 C4 ATP 5102 J 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 552 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 31 #