data_8RSD # _model_server_result.job_id XLaqnPqFHMRSxgO9Jp5YRg _model_server_result.datetime_utc '2024-12-08 03:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8RSD # _exptl.entry_id 8RSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RSD _cell.length_a 58.2 _cell.length_b 58.2 _cell.length_c 150.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 X CYS 9 1_555 A SG CYS 226 X CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 78 X CYS 56 1_555 A SG CYS 88 X CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 93 X CYS 71 1_555 A SG CYS 99 X CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 143 X CYS 121 1_555 A SG CYS 215 X CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 148 X CYS 126 1_555 A SG CYS 199 X CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 156 X CYS 134 1_555 A SG CYS 167 X CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 171 X CYS 149 1_555 A SG CYS 180 X CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 181 X CYS 159 1_555 A SG CYS 186 X CYS 164 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 181 X CYS 159 1_555 A SG CYS 186 X CYS 164 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 269 n n O11 C1 TAR sing 270 n n O11 HO1 TAR sing 271 n n C1 C2 TAR sing 272 n n C2 O2 TAR sing 273 n n C2 C3 TAR sing 274 n n C2 H2 TAR sing 275 n n O2 HO2 TAR sing 276 n n C3 O3 TAR sing 277 n n C3 C4 TAR sing 278 n n C3 H3 TAR sing 279 n n O3 HO3 TAR sing 280 n n C4 O4 TAR doub 281 n n C4 O41 TAR sing 282 n n O41 HO4 TAR sing 283 n n # _atom_sites.entry_id 8RSD _atom_sites.fract_transf_matrix[1][1] 0.017182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAR X 1 501 501 TAR TLA . C 3 HOH X 1 601 183 HOH HOH . C 3 HOH X 2 602 115 HOH HOH . C 3 HOH X 3 603 175 HOH HOH . C 3 HOH X 4 604 26 HOH HOH . C 3 HOH X 5 605 137 HOH HOH . C 3 HOH X 6 606 172 HOH HOH . C 3 HOH X 7 607 42 HOH HOH . C 3 HOH X 8 608 37 HOH HOH . C 3 HOH X 9 609 63 HOH HOH . C 3 HOH X 10 610 158 HOH HOH . C 3 HOH X 11 611 83 HOH HOH . C 3 HOH X 12 612 12 HOH HOH . C 3 HOH X 13 613 66 HOH HOH . C 3 HOH X 14 614 11 HOH HOH . C 3 HOH X 15 615 155 HOH HOH . C 3 HOH X 16 616 38 HOH HOH . C 3 HOH X 17 617 6 HOH HOH . C 3 HOH X 18 618 178 HOH HOH . C 3 HOH X 19 619 31 HOH HOH . C 3 HOH X 20 620 50 HOH HOH . C 3 HOH X 21 621 54 HOH HOH . C 3 HOH X 22 622 130 HOH HOH . C 3 HOH X 23 623 127 HOH HOH . C 3 HOH X 24 624 7 HOH HOH . C 3 HOH X 25 625 142 HOH HOH . C 3 HOH X 26 626 114 HOH HOH . C 3 HOH X 27 627 15 HOH HOH . C 3 HOH X 28 628 36 HOH HOH . C 3 HOH X 29 629 4 HOH HOH . C 3 HOH X 30 630 20 HOH HOH . C 3 HOH X 31 631 167 HOH HOH . C 3 HOH X 32 632 17 HOH HOH . C 3 HOH X 33 633 23 HOH HOH . C 3 HOH X 34 634 162 HOH HOH . C 3 HOH X 35 635 35 HOH HOH . C 3 HOH X 36 636 105 HOH HOH . C 3 HOH X 37 637 160 HOH HOH . C 3 HOH X 38 638 40 HOH HOH . C 3 HOH X 39 639 8 HOH HOH . C 3 HOH X 40 640 91 HOH HOH . C 3 HOH X 41 641 165 HOH HOH . C 3 HOH X 42 642 27 HOH HOH . C 3 HOH X 43 643 1 HOH HOH . C 3 HOH X 44 644 64 HOH HOH . C 3 HOH X 45 645 166 HOH HOH . C 3 HOH X 46 646 10 HOH HOH . C 3 HOH X 47 647 123 HOH HOH . C 3 HOH X 48 648 33 HOH HOH . C 3 HOH X 49 649 84 HOH HOH . C 3 HOH X 50 650 126 HOH HOH . C 3 HOH X 51 651 176 HOH HOH . C 3 HOH X 52 652 25 HOH HOH . C 3 HOH X 53 653 21 HOH HOH . C 3 HOH X 54 654 2 HOH HOH . C 3 HOH X 55 655 18 HOH HOH . C 3 HOH X 56 656 52 HOH HOH . C 3 HOH X 57 657 76 HOH HOH . C 3 HOH X 58 658 55 HOH HOH . C 3 HOH X 59 659 97 HOH HOH . C 3 HOH X 60 660 60 HOH HOH . C 3 HOH X 61 661 14 HOH HOH . C 3 HOH X 62 662 81 HOH HOH . C 3 HOH X 63 663 70 HOH HOH . C 3 HOH X 64 664 93 HOH HOH . C 3 HOH X 65 665 79 HOH HOH . C 3 HOH X 66 666 121 HOH HOH . C 3 HOH X 67 667 41 HOH HOH . C 3 HOH X 68 668 61 HOH HOH . C 3 HOH X 69 669 149 HOH HOH . C 3 HOH X 70 670 77 HOH HOH . C 3 HOH X 71 671 159 HOH HOH . C 3 HOH X 72 672 78 HOH HOH . C 3 HOH X 73 673 80 HOH HOH . C 3 HOH X 74 674 95 HOH HOH . C 3 HOH X 75 675 107 HOH HOH . C 3 HOH X 76 676 57 HOH HOH . C 3 HOH X 77 677 49 HOH HOH . C 3 HOH X 78 678 71 HOH HOH . C 3 HOH X 79 679 22 HOH HOH . C 3 HOH X 80 680 9 HOH HOH . C 3 HOH X 81 681 28 HOH HOH . C 3 HOH X 82 682 150 HOH HOH . C 3 HOH X 83 683 98 HOH HOH . C 3 HOH X 84 684 19 HOH HOH . C 3 HOH X 85 685 59 HOH HOH . C 3 HOH X 86 686 92 HOH HOH . C 3 HOH X 87 687 169 HOH HOH . C 3 HOH X 88 688 13 HOH HOH . C 3 HOH X 89 689 112 HOH HOH . C 3 HOH X 90 690 86 HOH HOH . C 3 HOH X 91 691 16 HOH HOH . C 3 HOH X 92 692 164 HOH HOH . C 3 HOH X 93 693 46 HOH HOH . C 3 HOH X 94 694 5 HOH HOH . C 3 HOH X 95 695 117 HOH HOH . C 3 HOH X 96 696 34 HOH HOH . C 3 HOH X 97 697 113 HOH HOH . C 3 HOH X 98 698 170 HOH HOH . C 3 HOH X 99 699 39 HOH HOH . C 3 HOH X 100 700 56 HOH HOH . C 3 HOH X 101 701 51 HOH HOH . C 3 HOH X 102 702 30 HOH HOH . C 3 HOH X 103 703 119 HOH HOH . C 3 HOH X 104 704 3 HOH HOH . C 3 HOH X 105 705 177 HOH HOH . C 3 HOH X 106 706 32 HOH HOH . C 3 HOH X 107 707 156 HOH HOH . C 3 HOH X 108 708 103 HOH HOH . C 3 HOH X 109 709 58 HOH HOH . C 3 HOH X 110 710 180 HOH HOH . C 3 HOH X 111 711 45 HOH HOH . C 3 HOH X 112 712 90 HOH HOH . C 3 HOH X 113 713 29 HOH HOH . C 3 HOH X 114 714 48 HOH HOH . C 3 HOH X 115 715 146 HOH HOH . C 3 HOH X 116 716 73 HOH HOH . C 3 HOH X 117 717 82 HOH HOH . C 3 HOH X 118 718 68 HOH HOH . C 3 HOH X 119 719 116 HOH HOH . C 3 HOH X 120 720 108 HOH HOH . C 3 HOH X 121 721 157 HOH HOH . C 3 HOH X 122 722 43 HOH HOH . C 3 HOH X 123 723 24 HOH HOH . C 3 HOH X 124 724 87 HOH HOH . C 3 HOH X 125 725 131 HOH HOH . C 3 HOH X 126 726 152 HOH HOH . C 3 HOH X 127 727 120 HOH HOH . C 3 HOH X 128 728 67 HOH HOH . C 3 HOH X 129 729 89 HOH HOH . C 3 HOH X 130 730 106 HOH HOH . C 3 HOH X 131 731 153 HOH HOH . C 3 HOH X 132 732 140 HOH HOH . C 3 HOH X 133 733 139 HOH HOH . C 3 HOH X 134 734 104 HOH HOH . C 3 HOH X 135 735 132 HOH HOH . C 3 HOH X 136 736 101 HOH HOH . C 3 HOH X 137 737 47 HOH HOH . C 3 HOH X 138 738 74 HOH HOH . C 3 HOH X 139 739 184 HOH HOH . C 3 HOH X 140 740 53 HOH HOH . C 3 HOH X 141 741 118 HOH HOH . C 3 HOH X 142 742 72 HOH HOH . C 3 HOH X 143 743 136 HOH HOH . C 3 HOH X 144 744 154 HOH HOH . C 3 HOH X 145 745 144 HOH HOH . C 3 HOH X 146 746 75 HOH HOH . C 3 HOH X 147 747 124 HOH HOH . C 3 HOH X 148 748 110 HOH HOH . C 3 HOH X 149 749 181 HOH HOH . C 3 HOH X 150 750 62 HOH HOH . C 3 HOH X 151 751 128 HOH HOH . C 3 HOH X 152 752 147 HOH HOH . C 3 HOH X 153 753 129 HOH HOH . C 3 HOH X 154 754 125 HOH HOH . C 3 HOH X 155 755 100 HOH HOH . C 3 HOH X 156 756 143 HOH HOH . C 3 HOH X 157 757 44 HOH HOH . C 3 HOH X 158 758 145 HOH HOH . C 3 HOH X 159 759 182 HOH HOH . C 3 HOH X 160 760 69 HOH HOH . C 3 HOH X 161 761 179 HOH HOH . C 3 HOH X 162 762 171 HOH HOH . C 3 HOH X 163 763 141 HOH HOH . C 3 HOH X 164 764 138 HOH HOH . C 3 HOH X 165 765 135 HOH HOH . C 3 HOH X 166 766 99 HOH HOH . C 3 HOH X 167 767 96 HOH HOH . C 3 HOH X 168 768 173 HOH HOH . C 3 HOH X 169 769 88 HOH HOH . C 3 HOH X 170 770 109 HOH HOH . C 3 HOH X 171 771 174 HOH HOH . C 3 HOH X 172 772 134 HOH HOH . C 3 HOH X 173 773 85 HOH HOH . C 3 HOH X 174 774 163 HOH HOH . C 3 HOH X 175 775 161 HOH HOH . C 3 HOH X 176 776 111 HOH HOH . C 3 HOH X 177 777 65 HOH HOH . C 3 HOH X 178 778 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . B 2 -8.941 16.803 -26.391 1 21.14 ? O1 TAR 501 X 1 HETATM 2 O O11 TAR . . . B 2 -10.397 17.359 -24.714 1 19.96 ? O11 TAR 501 X 1 HETATM 3 C C1 TAR . . . B 2 -9.937 16.63 -25.622 1 20.48 ? C1 TAR 501 X 1 HETATM 4 C C2 TAR . . . B 2 -10.627 15.268 -25.775 1 16.9 ? C2 TAR 501 X 1 HETATM 5 O O2 TAR . . . B 2 -11.797 15.297 -24.952 1 23.13 ? O2 TAR 501 X 1 HETATM 6 C C3 TAR . . . B 2 -9.666 14.235 -25.242 1 26.3 ? C3 TAR 501 X 1 HETATM 7 O O3 TAR . . . B 2 -9.364 14.513 -23.867 1 19 ? O3 TAR 501 X 1 HETATM 8 C C4 TAR . . . B 2 -10.362 12.849 -25.35 1 29.48 ? C4 TAR 501 X 1 HETATM 9 O O4 TAR . . . B 2 -10.563 12.391 -26.492 1 27.37 ? O4 TAR 501 X 1 HETATM 10 O O41 TAR . . . B 2 -10.678 12.297 -24.305 1 29.03 ? O41 TAR 501 X 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #