data_8RSO
#
_model_server_result.job_id            GP00HSqkehzNrd_sD41PaA 
_model_server_result.datetime_utc      '2025-06-18 14:49:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rso 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":511}' 
#
_entry.id    8RSO 
#
_exptl.entry_id    8RSO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         64.09 
_cell.angle_beta          81.52 
_cell.angle_gamma         85.29 
_cell.entry_id            8RSO 
_cell.length_a            40.71 
_cell.length_b            55.85 
_cell.length_c            56.64 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RSO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,HA 1 1 
B,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,IA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 V N N 
? 5 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 200 A LYS 200 1_555 V C15 RET . A RET 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 doub 
covale ? covale2 B NZ LYS 200 B LYS 200 1_555 GA C15 RET . B RET 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 doub 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 419 n n 
C1 C6 RET sing 420 n n 
C1 C16 RET sing 421 n n 
C1 C17 RET sing 422 n n 
C2 C3 RET sing 423 n n 
C2 H21 RET sing 424 n n 
C2 H22 RET sing 425 n n 
C3 C4 RET sing 426 n n 
C3 H31 RET sing 427 n n 
C3 H32 RET sing 428 n n 
C4 C5 RET sing 429 n n 
C4 H41 RET sing 430 n n 
C4 H42 RET sing 431 n n 
C5 C6 RET doub 432 n n 
C5 C18 RET sing 433 n n 
C6 C7 RET sing 434 n n 
C7 C8 RET doub 435 e n 
C7 H7 RET sing 436 n n 
C8 C9 RET sing 437 n n 
C8 H8 RET sing 438 n n 
C9 C10 RET doub 439 e n 
C9 C19 RET sing 440 n n 
C10 C11 RET sing 441 n n 
C10 H10 RET sing 442 n n 
C11 C12 RET doub 443 e n 
C11 H11 RET sing 444 n n 
C12 C13 RET sing 445 n n 
C12 H12 RET sing 446 n n 
C13 C14 RET doub 447 e n 
C13 C20 RET sing 448 n n 
C14 C15 RET sing 449 n n 
C14 H14 RET sing 450 n n 
C15 O1 RET doub 451 n n 
C15 H15 RET sing 452 n n 
C16 H161 RET sing 453 n n 
C16 H162 RET sing 454 n n 
C16 H163 RET sing 455 n n 
C17 H171 RET sing 456 n n 
C17 H172 RET sing 457 n n 
C17 H173 RET sing 458 n n 
C18 H181 RET sing 459 n n 
C18 H182 RET sing 460 n n 
C18 H183 RET sing 461 n n 
C19 H191 RET sing 462 n n 
C19 H192 RET sing 463 n n 
C19 H193 RET sing 464 n n 
C20 H201 RET sing 465 n n 
C20 H202 RET sing 466 n n 
C20 H203 RET sing 467 n n 
#
_atom_sites.entry_id                     8RSO 
_atom_sites.fract_transf_matrix[1][1]    0.024564 
_atom_sites.fract_transf_matrix[1][2]    -0.002024 
_atom_sites.fract_transf_matrix[1][3]    -0.003092 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017966 
_atom_sites.fract_transf_matrix[2][3]    -0.008581 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019782 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OLC A 1 501 501 OLC OLC . 
D 2 OLC A 1 502 502 OLC OLC . 
E 2 OLC A 1 503 503 OLC OLC . 
F 3 LFA A 1 504 504 LFA LFA . 
G 3 LFA A 1 505 505 LFA LFA . 
H 3 LFA A 1 506 506 LFA LFA . 
I 3 LFA A 1 507 507 LFA LFA . 
J 3 LFA A 1 508 508 LFA LFA . 
K 3 LFA A 1 509 509 LFA LFA . 
L 3 LFA A 1 510 510 LFA LFA . 
M 4 GOL A 1 511 511 GOL GOL . 
N 2 OLC A 1 512 512 OLC OLC . 
O 2 OLC A 1 513 513 OLC OLC . 
P 3 LFA A 1 514 514 LFA LFA . 
Q 4 GOL A 1 515 502 GOL GOL . 
R 3 LFA A 1 516 503 LFA LFA . 
S 2 OLC A 1 517 505 OLC OLC . 
T 2 OLC A 1 518 508 OLC OLC . 
U 4 GOL A 1 519 515 GOL GOL . 
V 5 RET A 1 520 200 RET LYR . 
W 3 LFA B 1 501 501 LFA LFA . 
X 3 LFA B 1 502 504 LFA LFA . 
Y 2 OLC B 1 503 506 OLC OLC . 
Z 2 OLC B 1 504 507 OLC OLC . 
AA 2 OLC B 1 505 509 OLC OLC . 
BA 3 LFA B 1 506 510 LFA LFA . 
CA 3 LFA B 1 507 511 LFA LFA . 
DA 3 LFA B 1 508 512 LFA LFA . 
EA 3 LFA B 1 509 513 LFA LFA . 
FA 6 PO4 B 1 510 514 PO4 PO4 . 
GA 5 RET B 1 511 200 RET LYR . 
HA 7 HOH A 1 601 643 HOH HOH . 
HA 7 HOH A 2 602 626 HOH HOH . 
HA 7 HOH A 3 603 646 HOH HOH . 
HA 7 HOH A 4 604 612 HOH HOH . 
HA 7 HOH A 5 605 652 HOH HOH . 
HA 7 HOH A 6 606 647 HOH HOH . 
HA 7 HOH A 7 607 649 HOH HOH . 
HA 7 HOH A 8 608 609 HOH HOH . 
HA 7 HOH A 9 609 617 HOH HOH . 
HA 7 HOH A 10 610 608 HOH HOH . 
HA 7 HOH A 11 611 651 HOH HOH . 
HA 7 HOH A 12 612 607 HOH HOH . 
HA 7 HOH A 13 613 620 HOH HOH . 
HA 7 HOH A 14 614 627 HOH HOH . 
HA 7 HOH A 15 615 613 HOH HOH . 
HA 7 HOH A 16 616 654 HOH HOH . 
HA 7 HOH A 17 617 614 HOH HOH . 
HA 7 HOH A 18 618 628 HOH HOH . 
HA 7 HOH A 19 619 623 HOH HOH . 
HA 7 HOH A 20 620 604 HOH HOH . 
HA 7 HOH A 21 621 610 HOH HOH . 
HA 7 HOH A 22 622 639 HOH HOH . 
HA 7 HOH A 23 623 625 HOH HOH . 
HA 7 HOH A 24 624 633 HOH HOH . 
HA 7 HOH A 25 625 615 HOH HOH . 
HA 7 HOH A 26 626 603 HOH HOH . 
HA 7 HOH A 27 627 644 HOH HOH . 
HA 7 HOH A 28 628 655 HOH HOH . 
HA 7 HOH A 29 629 616 HOH HOH . 
HA 7 HOH A 30 630 642 HOH HOH . 
HA 7 HOH A 31 631 602 HOH HOH . 
HA 7 HOH A 32 632 606 HOH HOH . 
HA 7 HOH A 33 633 630 HOH HOH . 
HA 7 HOH A 34 634 645 HOH HOH . 
HA 7 HOH A 35 635 622 HOH HOH . 
HA 7 HOH A 36 636 605 HOH HOH . 
HA 7 HOH A 37 637 621 HOH HOH . 
HA 7 HOH A 38 638 658 HOH HOH . 
HA 7 HOH A 39 639 601 HOH HOH . 
HA 7 HOH A 40 640 636 HOH HOH . 
HA 7 HOH A 41 641 641 HOH HOH . 
HA 7 HOH A 42 642 629 HOH HOH . 
HA 7 HOH A 43 643 662 HOH HOH . 
HA 7 HOH A 44 644 640 HOH HOH . 
HA 7 HOH A 45 645 637 HOH HOH . 
HA 7 HOH A 46 646 653 HOH HOH . 
HA 7 HOH A 47 647 635 HOH HOH . 
HA 7 HOH A 48 648 656 HOH HOH . 
HA 7 HOH A 49 649 629 HOH HOH . 
HA 7 HOH A 50 650 632 HOH HOH . 
HA 7 HOH A 51 651 618 HOH HOH . 
HA 7 HOH A 52 652 638 HOH HOH . 
HA 7 HOH A 53 653 657 HOH HOH . 
HA 7 HOH A 54 654 650 HOH HOH . 
HA 7 HOH A 55 655 611 HOH HOH . 
HA 7 HOH A 56 656 659 HOH HOH . 
HA 7 HOH A 57 657 619 HOH HOH . 
HA 7 HOH A 58 658 631 HOH HOH . 
HA 7 HOH A 59 659 648 HOH HOH . 
HA 7 HOH A 60 660 652 HOH HOH . 
HA 7 HOH A 61 661 660 HOH HOH . 
HA 7 HOH A 62 662 661 HOH HOH . 
HA 7 HOH A 63 663 624 HOH HOH . 
HA 7 HOH A 64 664 634 HOH HOH . 
IA 7 HOH B 1 601 665 HOH HOH . 
IA 7 HOH B 2 602 639 HOH HOH . 
IA 7 HOH B 3 603 656 HOH HOH . 
IA 7 HOH B 4 604 615 HOH HOH . 
IA 7 HOH B 5 605 664 HOH HOH . 
IA 7 HOH B 6 606 631 HOH HOH . 
IA 7 HOH B 7 607 626 HOH HOH . 
IA 7 HOH B 8 608 670 HOH HOH . 
IA 7 HOH B 9 609 654 HOH HOH . 
IA 7 HOH B 10 610 660 HOH HOH . 
IA 7 HOH B 11 611 613 HOH HOH . 
IA 7 HOH B 12 612 612 HOH HOH . 
IA 7 HOH B 13 613 623 HOH HOH . 
IA 7 HOH B 14 614 608 HOH HOH . 
IA 7 HOH B 15 615 609 HOH HOH . 
IA 7 HOH B 16 616 617 HOH HOH . 
IA 7 HOH B 17 617 644 HOH HOH . 
IA 7 HOH B 18 618 653 HOH HOH . 
IA 7 HOH B 19 619 630 HOH HOH . 
IA 7 HOH B 20 620 625 HOH HOH . 
IA 7 HOH B 21 621 620 HOH HOH . 
IA 7 HOH B 22 622 667 HOH HOH . 
IA 7 HOH B 23 623 632 HOH HOH . 
IA 7 HOH B 24 624 604 HOH HOH . 
IA 7 HOH B 25 625 603 HOH HOH . 
IA 7 HOH B 26 626 610 HOH HOH . 
IA 7 HOH B 27 627 650 HOH HOH . 
IA 7 HOH B 28 628 619 HOH HOH . 
IA 7 HOH B 29 629 669 HOH HOH . 
IA 7 HOH B 30 630 638 HOH HOH . 
IA 7 HOH B 31 631 618 HOH HOH . 
IA 7 HOH B 32 632 657 HOH HOH . 
IA 7 HOH B 33 633 611 HOH HOH . 
IA 7 HOH B 34 634 641 HOH HOH . 
IA 7 HOH B 35 635 627 HOH HOH . 
IA 7 HOH B 36 636 605 HOH HOH . 
IA 7 HOH B 37 637 622 HOH HOH . 
IA 7 HOH B 38 638 634 HOH HOH . 
IA 7 HOH B 39 639 655 HOH HOH . 
IA 7 HOH B 40 640 602 HOH HOH . 
IA 7 HOH B 41 641 649 HOH HOH . 
IA 7 HOH B 42 642 624 HOH HOH . 
IA 7 HOH B 43 643 661 HOH HOH . 
IA 7 HOH B 44 644 606 HOH HOH . 
IA 7 HOH B 45 645 607 HOH HOH . 
IA 7 HOH B 46 646 645 HOH HOH . 
IA 7 HOH B 47 647 642 HOH HOH . 
IA 7 HOH B 48 648 636 HOH HOH . 
IA 7 HOH B 49 649 651 HOH HOH . 
IA 7 HOH B 50 650 601 HOH HOH . 
IA 7 HOH B 51 651 646 HOH HOH . 
IA 7 HOH B 52 652 643 HOH HOH . 
IA 7 HOH B 53 653 637 HOH HOH . 
IA 7 HOH B 54 654 633 HOH HOH . 
IA 7 HOH B 55 655 662 HOH HOH . 
IA 7 HOH B 56 656 628 HOH HOH . 
IA 7 HOH B 57 657 616 HOH HOH . 
IA 7 HOH B 58 658 658 HOH HOH . 
IA 7 HOH B 59 659 666 HOH HOH . 
IA 7 HOH B 60 660 671 HOH HOH . 
IA 7 HOH B 61 661 663 HOH HOH . 
IA 7 HOH B 62 662 621 HOH HOH . 
IA 7 HOH B 63 663 635 HOH HOH . 
IA 7 HOH B 64 664 659 HOH HOH . 
IA 7 HOH B 65 665 647 HOH HOH . 
IA 7 HOH B 66 666 668 HOH HOH . 
IA 7 HOH B 67 667 614 HOH HOH . 
IA 7 HOH B 68 668 640 HOH HOH . 
IA 7 HOH B 69 669 648 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . GA 5 33.889 61.524 29.888 1 15.87 ? C1 RET 511 B 1 
HETATM 2 C C2 RET . . . GA 5 32.503 61.07 30.353 1 17.74 ? C2 RET 511 B 1 
HETATM 3 C C3 RET . . . GA 5 31.602 60.656 29.22 1 17.94 ? C3 RET 511 B 1 
HETATM 4 C C4 RET . . . GA 5 31.333 61.849 28.335 1 17.79 ? C4 RET 511 B 1 
HETATM 5 C C5 RET . . . GA 5 32.557 62.635 28.019 1 15.49 ? C5 RET 511 B 1 
HETATM 6 C C6 RET . . . GA 5 33.723 62.483 28.694 1 16.15 ? C6 RET 511 B 1 
HETATM 7 C C7 RET . . . GA 5 34.861 63.289 28.29 1 16.01 ? C7 RET 511 B 1 
HETATM 8 C C8 RET . . . GA 5 36.186 63.188 28.579 1 16.36 ? C8 RET 511 B 1 
HETATM 9 C C9 RET . . . GA 5 37.268 63.889 27.944 1 15.27 ? C9 RET 511 B 1 
HETATM 10 C C10 RET . . . GA 5 38.541 63.67 28.356 1 15.19 ? C10 RET 511 B 1 
HETATM 11 C C11 RET . . . GA 5 39.763 64.182 27.842 1 14.91 ? C11 RET 511 B 1 
HETATM 12 C C12 RET . . . GA 5 40.942 63.822 28.364 1 15 ? C12 RET 511 B 1 
HETATM 13 C C13 RET . . . GA 5 42.209 64.416 28.023 1 15.13 ? C13 RET 511 B 1 
HETATM 14 C C14 RET . . . GA 5 43.318 64.084 28.743 1 17.7 ? C14 RET 511 B 1 
HETATM 15 C C15 RET . . . GA 5 44.506 64.93 28.764 1 18.57 ? C15 RET 511 B 1 
HETATM 16 C C16 RET . . . GA 5 34.463 62.249 31.101 1 17.46 ? C16 RET 511 B 1 
HETATM 17 C C17 RET . . . GA 5 34.767 60.306 29.597 1 16.93 ? C17 RET 511 B 1 
HETATM 18 C C18 RET . . . GA 5 32.351 63.626 26.929 1 17.51 ? C18 RET 511 B 1 
HETATM 19 C C19 RET . . . GA 5 36.945 64.797 26.81 1 16.83 ? C19 RET 511 B 1 
HETATM 20 C C20 RET . . . GA 5 42.263 65.425 26.939 1 17.02 ? C20 RET 511 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           20 
#