data_8RSP
#
_model_server_result.job_id            vjzR9WglR4vMV3ZFOIW8TA 
_model_server_result.datetime_utc      '2025-08-19 21:27:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rsp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":314}' 
#
_entry.id    8RSP 
#
_exptl.entry_id    8RSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         64.41 
_cell.angle_beta          81.31 
_cell.angle_gamma         84.43 
_cell.entry_id            8RSP 
_cell.length_a            40.684 
_cell.length_b            55.982 
_cell.length_c            56.728 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,HA 1 1 
B,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,IA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 S N N 
? 5 GA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 200 A LYS 200 1_555 S C15 RET . A RET 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 sing 
covale ? covale2 B NZ LYS 200 B LYS 200 1_555 GA C15 RET . B RET 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 sing 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 419 n n 
C1 C6 RET sing 420 n n 
C1 C16 RET sing 421 n n 
C1 C17 RET sing 422 n n 
C2 C3 RET sing 423 n n 
C2 H21 RET sing 424 n n 
C2 H22 RET sing 425 n n 
C3 C4 RET sing 426 n n 
C3 H31 RET sing 427 n n 
C3 H32 RET sing 428 n n 
C4 C5 RET sing 429 n n 
C4 H41 RET sing 430 n n 
C4 H42 RET sing 431 n n 
C5 C6 RET doub 432 n n 
C5 C18 RET sing 433 n n 
C6 C7 RET sing 434 n n 
C7 C8 RET doub 435 e n 
C7 H7 RET sing 436 n n 
C8 C9 RET sing 437 n n 
C8 H8 RET sing 438 n n 
C9 C10 RET doub 439 e n 
C9 C19 RET sing 440 n n 
C10 C11 RET sing 441 n n 
C10 H10 RET sing 442 n n 
C11 C12 RET doub 443 e n 
C11 H11 RET sing 444 n n 
C12 C13 RET sing 445 n n 
C12 H12 RET sing 446 n n 
C13 C14 RET doub 447 e n 
C13 C20 RET sing 448 n n 
C14 C15 RET sing 449 n n 
C14 H14 RET sing 450 n n 
C15 O1 RET doub 451 n n 
C15 H15 RET sing 452 n n 
C16 H161 RET sing 453 n n 
C16 H162 RET sing 454 n n 
C16 H163 RET sing 455 n n 
C17 H171 RET sing 456 n n 
C17 H172 RET sing 457 n n 
C17 H173 RET sing 458 n n 
C18 H181 RET sing 459 n n 
C18 H182 RET sing 460 n n 
C18 H183 RET sing 461 n n 
C19 H191 RET sing 462 n n 
C19 H192 RET sing 463 n n 
C19 H193 RET sing 464 n n 
C20 H201 RET sing 465 n n 
C20 H202 RET sing 466 n n 
C20 H203 RET sing 467 n n 
#
_atom_sites.entry_id                     8RSP 
_atom_sites.fract_transf_matrix[1][1]    0.02458 
_atom_sites.fract_transf_matrix[1][2]    -0.002397 
_atom_sites.fract_transf_matrix[1][3]    -0.003026 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017948 
_atom_sites.fract_transf_matrix[2][3]    -0.008405 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019691 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OLC A 1 301 217 OLC OLC . 
D 2 OLC A 1 302 218 OLC OLC . 
E 3 LFA A 1 303 219 LFA LFA . 
F 3 LFA A 1 304 220 LFA LFA . 
G 3 LFA A 1 305 221 LFA LFA . 
H 3 LFA A 1 306 222 LFA LFA . 
I 3 LFA A 1 307 223 LFA LFA . 
J 3 LFA A 1 308 224 LFA LFA . 
K 3 LFA A 1 309 225 LFA LFA . 
L 4 GOL A 1 310 226 GOL GOL . 
M 2 OLC A 1 311 227 OLC OLC . 
N 2 OLC A 1 312 228 OLC OLC . 
O 3 LFA A 1 313 229 LFA LFA . 
P 4 GOL A 1 314 230 GOL GOL . 
Q 2 OLC A 1 315 231 OLC OLC . 
R 4 GOL A 1 316 232 GOL GOL . 
S 5 RET A 1 317 200 RET LYR . 
T 2 OLC B 1 301 218 OLC OLC . 
U 3 LFA B 1 302 219 LFA LFA . 
V 3 LFA B 1 303 220 LFA LFA . 
W 3 LFA B 1 304 221 LFA LFA . 
X 2 OLC B 1 305 222 OLC OLC . 
Y 2 OLC B 1 306 223 OLC OLC . 
Z 2 OLC B 1 307 224 OLC OLC . 
AA 2 OLC B 1 308 225 OLC OLC . 
BA 3 LFA B 1 309 226 LFA LFA . 
CA 3 LFA B 1 310 227 LFA LFA . 
DA 3 LFA B 1 311 228 LFA LFA . 
EA 3 LFA B 1 312 229 LFA LFA . 
FA 6 PO4 B 1 313 230 PO4 PO4 . 
GA 5 RET B 1 314 200 RET LYR . 
HA 7 HOH A 1 401 242 HOH HOH . 
HA 7 HOH A 2 402 247 HOH HOH . 
HA 7 HOH A 3 403 263 HOH HOH . 
HA 7 HOH A 4 404 246 HOH HOH . 
HA 7 HOH A 5 405 258 HOH HOH . 
HA 7 HOH A 6 406 239 HOH HOH . 
HA 7 HOH A 7 407 236 HOH HOH . 
HA 7 HOH A 8 408 243 HOH HOH . 
HA 7 HOH A 9 409 256 HOH HOH . 
HA 7 HOH A 10 410 250 HOH HOH . 
HA 7 HOH A 11 411 245 HOH HOH . 
HA 7 HOH A 12 412 257 HOH HOH . 
HA 7 HOH A 13 413 244 HOH HOH . 
HA 7 HOH A 14 414 264 HOH HOH . 
HA 7 HOH A 15 415 253 HOH HOH . 
HA 7 HOH A 16 416 251 HOH HOH . 
HA 7 HOH A 17 417 237 HOH HOH . 
HA 7 HOH A 18 418 233 HOH HOH . 
HA 7 HOH A 19 419 249 HOH HOH . 
HA 7 HOH A 20 420 238 HOH HOH . 
HA 7 HOH A 21 421 248 HOH HOH . 
HA 7 HOH A 22 422 252 HOH HOH . 
HA 7 HOH A 23 423 235 HOH HOH . 
HA 7 HOH A 24 424 240 HOH HOH . 
HA 7 HOH A 25 425 234 HOH HOH . 
HA 7 HOH A 26 426 254 HOH HOH . 
HA 7 HOH A 27 427 265 HOH HOH . 
HA 7 HOH A 28 428 268 HOH HOH . 
HA 7 HOH A 29 429 259 HOH HOH . 
HA 7 HOH A 30 430 267 HOH HOH . 
HA 7 HOH A 31 431 260 HOH HOH . 
HA 7 HOH A 32 432 266 HOH HOH . 
HA 7 HOH A 33 433 261 HOH HOH . 
HA 7 HOH A 34 434 255 HOH HOH . 
HA 7 HOH A 35 435 241 HOH HOH . 
HA 7 HOH A 36 436 262 HOH HOH . 
IA 7 HOH B 1 401 246 HOH HOH . 
IA 7 HOH B 2 402 244 HOH HOH . 
IA 7 HOH B 3 403 242 HOH HOH . 
IA 7 HOH B 4 404 238 HOH HOH . 
IA 7 HOH B 5 405 240 HOH HOH . 
IA 7 HOH B 6 406 245 HOH HOH . 
IA 7 HOH B 7 407 248 HOH HOH . 
IA 7 HOH B 8 408 243 HOH HOH . 
IA 7 HOH B 9 409 231 HOH HOH . 
IA 7 HOH B 10 410 234 HOH HOH . 
IA 7 HOH B 11 411 241 HOH HOH . 
IA 7 HOH B 12 412 233 HOH HOH . 
IA 7 HOH B 13 413 236 HOH HOH . 
IA 7 HOH B 14 414 232 HOH HOH . 
IA 7 HOH B 15 415 235 HOH HOH . 
IA 7 HOH B 16 416 247 HOH HOH . 
IA 7 HOH B 17 417 239 HOH HOH . 
IA 7 HOH B 18 418 237 HOH HOH . 
IA 7 HOH B 19 419 249 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . GA 5 -20.86 -17.875 -21.06 1 22.94 ? C1 RET 314 B 1 
HETATM 2 C C2 RET . . . GA 5 -22.235 -18.431 -20.684 1 22.05 ? C2 RET 314 B 1 
HETATM 3 C C3 RET . . . GA 5 -23.033 -18.857 -21.859 1 23.58 ? C3 RET 314 B 1 
HETATM 4 C C4 RET . . . GA 5 -23.242 -17.698 -22.82 1 31.26 ? C4 RET 314 B 1 
HETATM 5 C C5 RET . . . GA 5 -22.043 -16.809 -22.99 1 20.67 ? C5 RET 314 B 1 
HETATM 6 C C6 RET . . . GA 5 -20.955 -16.867 -22.196 1 22.66 ? C6 RET 314 B 1 
HETATM 7 C C7 RET . . . GA 5 -19.871 -15.929 -22.395 1 26.2 ? C7 RET 314 B 1 
HETATM 8 C C8 RET . . . GA 5 -18.551 -16.221 -22.558 1 25.51 ? C8 RET 314 B 1 
HETATM 9 C C9 RET . . . GA 5 -17.518 -15.421 -23.031 1 20.02 ? C9 RET 314 B 1 
HETATM 10 C C10 RET . . . GA 5 -16.271 -15.385 -22.393 1 23.43 ? C10 RET 314 B 1 
HETATM 11 C C11 RET . . . GA 5 -15.044 -15.046 -22.919 1 20.44 ? C11 RET 314 B 1 
HETATM 12 C C12 RET . . . GA 5 -13.8 -15.455 -22.487 1 21.88 ? C12 RET 314 B 1 
HETATM 13 C C13 RET . . . GA 5 -12.538 -14.91 -22.823 1 24.68 ? C13 RET 314 B 1 
HETATM 14 C C14 RET . . . GA 5 -11.43 -15.249 -22.122 1 24.56 ? C14 RET 314 B 1 
HETATM 15 C C15 RET . . . GA 5 -10.348 -14.248 -21.809 1 26.31 ? C15 RET 314 B 1 
HETATM 16 C C16 RET . . . GA 5 -20.268 -17.215 -19.804 1 26.43 ? C16 RET 314 B 1 
HETATM 17 C C17 RET . . . GA 5 -19.968 -19.063 -21.457 1 20.83 ? C17 RET 314 B 1 
HETATM 18 C C18 RET . . . GA 5 -22.2 -15.836 -24.125 1 21.12 ? C18 RET 314 B 1 
HETATM 19 C C19 RET . . . GA 5 -17.691 -14.586 -24.242 1 24.19 ? C19 RET 314 B 1 
HETATM 20 C C20 RET . . . GA 5 -12.504 -13.964 -23.941 1 22.73 ? C20 RET 314 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#