data_8RSR
#
_model_server_result.job_id            OQvTFKpwGZ4YbgoJ9m0BNw 
_model_server_result.datetime_utc      '2025-06-18 21:54:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rsr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    8RSR 
#
_exptl.entry_id    8RSR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     3.6.5.2 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.54 
_cell.angle_gamma         90 
_cell.entry_id            8RSR 
_cell.length_a            133.186 
_cell.length_b            39.787 
_cell.length_c            95.756 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RSR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             200 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              200 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              504 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.449 
_struct_conn.pdbx_value_order               sing 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 436 n n 
C1 C6 RET sing 437 n n 
C1 C16 RET sing 438 n n 
C1 C17 RET sing 439 n n 
C2 C3 RET sing 440 n n 
C2 H21 RET sing 441 n n 
C2 H22 RET sing 442 n n 
C3 C4 RET sing 443 n n 
C3 H31 RET sing 444 n n 
C3 H32 RET sing 445 n n 
C4 C5 RET sing 446 n n 
C4 H41 RET sing 447 n n 
C4 H42 RET sing 448 n n 
C5 C6 RET doub 449 n n 
C5 C18 RET sing 450 n n 
C6 C7 RET sing 451 n n 
C7 C8 RET doub 452 e n 
C7 H7 RET sing 453 n n 
C8 C9 RET sing 454 n n 
C8 H8 RET sing 455 n n 
C9 C10 RET doub 456 e n 
C9 C19 RET sing 457 n n 
C10 C11 RET sing 458 n n 
C10 H10 RET sing 459 n n 
C11 C12 RET doub 460 e n 
C11 H11 RET sing 461 n n 
C12 C13 RET sing 462 n n 
C12 H12 RET sing 463 n n 
C13 C14 RET doub 464 e n 
C13 C20 RET sing 465 n n 
C14 C15 RET sing 466 n n 
C14 H14 RET sing 467 n n 
C15 O1 RET doub 468 n n 
C15 H15 RET sing 469 n n 
C16 H161 RET sing 470 n n 
C16 H162 RET sing 471 n n 
C16 H163 RET sing 472 n n 
C17 H171 RET sing 473 n n 
C17 H172 RET sing 474 n n 
C17 H173 RET sing 475 n n 
C18 H181 RET sing 476 n n 
C18 H182 RET sing 477 n n 
C18 H183 RET sing 478 n n 
C19 H191 RET sing 479 n n 
C19 H192 RET sing 480 n n 
C19 H193 RET sing 481 n n 
C20 H201 RET sing 482 n n 
C20 H202 RET sing 483 n n 
C20 H203 RET sing 484 n n 
#
_atom_sites.entry_id                     8RSR 
_atom_sites.fract_transf_matrix[1][1]    0.007508 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005168 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025134 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012678 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 501 501 GDP GDP . 
C 3 LFA A 1 502 502 LFA LFA . 
D 4 OLA A 1 503 1 OLA OLA . 
E 5 RET A 1 504 200 RET LYR . 
F 6 HOH A 1 601 553 HOH HOH . 
F 6 HOH A 2 602 540 HOH HOH . 
F 6 HOH A 3 603 544 HOH HOH . 
F 6 HOH A 4 604 4 HOH HOH . 
F 6 HOH A 5 605 50 HOH HOH . 
F 6 HOH A 6 606 503 HOH HOH . 
F 6 HOH A 7 607 523 HOH HOH . 
F 6 HOH A 8 608 532 HOH HOH . 
F 6 HOH A 9 609 47 HOH HOH . 
F 6 HOH A 10 610 13 HOH HOH . 
F 6 HOH A 11 611 7 HOH HOH . 
F 6 HOH A 12 612 23 HOH HOH . 
F 6 HOH A 13 613 43 HOH HOH . 
F 6 HOH A 14 614 543 HOH HOH . 
F 6 HOH A 15 615 9 HOH HOH . 
F 6 HOH A 16 616 539 HOH HOH . 
F 6 HOH A 17 617 517 HOH HOH . 
F 6 HOH A 18 618 518 HOH HOH . 
F 6 HOH A 19 619 3 HOH HOH . 
F 6 HOH A 20 620 16 HOH HOH . 
F 6 HOH A 21 621 521 HOH HOH . 
F 6 HOH A 22 622 59 HOH HOH . 
F 6 HOH A 23 623 547 HOH HOH . 
F 6 HOH A 24 624 538 HOH HOH . 
F 6 HOH A 25 625 64 HOH HOH . 
F 6 HOH A 26 626 33 HOH HOH . 
F 6 HOH A 27 627 526 HOH HOH . 
F 6 HOH A 28 628 546 HOH HOH . 
F 6 HOH A 29 629 57 HOH HOH . 
F 6 HOH A 30 630 536 HOH HOH . 
F 6 HOH A 31 631 527 HOH HOH . 
F 6 HOH A 32 632 524 HOH HOH . 
F 6 HOH A 33 633 529 HOH HOH . 
F 6 HOH A 34 634 512 HOH HOH . 
F 6 HOH A 35 635 525 HOH HOH . 
F 6 HOH A 36 636 530 HOH HOH . 
F 6 HOH A 37 637 508 HOH HOH . 
F 6 HOH A 38 638 511 HOH HOH . 
F 6 HOH A 39 639 24 HOH HOH . 
F 6 HOH A 40 640 506 HOH HOH . 
F 6 HOH A 41 641 558 HOH HOH . 
F 6 HOH A 42 642 528 HOH HOH . 
F 6 HOH A 43 643 2 HOH HOH . 
F 6 HOH A 44 644 49 HOH HOH . 
F 6 HOH A 45 645 531 HOH HOH . 
F 6 HOH A 46 646 60 HOH HOH . 
F 6 HOH A 47 647 22 HOH HOH . 
F 6 HOH A 48 648 505 HOH HOH . 
F 6 HOH A 49 649 44 HOH HOH . 
F 6 HOH A 50 650 545 HOH HOH . 
F 6 HOH A 51 651 63 HOH HOH . 
F 6 HOH A 52 652 537 HOH HOH . 
F 6 HOH A 53 653 555 HOH HOH . 
F 6 HOH A 54 654 30 HOH HOH . 
F 6 HOH A 55 655 520 HOH HOH . 
F 6 HOH A 56 656 509 HOH HOH . 
F 6 HOH A 57 657 28 HOH HOH . 
F 6 HOH A 58 658 35 HOH HOH . 
F 6 HOH A 59 659 51 HOH HOH . 
F 6 HOH A 60 660 510 HOH HOH . 
F 6 HOH A 61 661 40 HOH HOH . 
F 6 HOH A 62 662 557 HOH HOH . 
F 6 HOH A 63 663 36 HOH HOH . 
F 6 HOH A 64 664 41 HOH HOH . 
F 6 HOH A 65 665 548 HOH HOH . 
F 6 HOH A 66 666 515 HOH HOH . 
F 6 HOH A 67 667 56 HOH HOH . 
F 6 HOH A 68 668 8 HOH HOH . 
F 6 HOH A 69 669 5 HOH HOH . 
F 6 HOH A 70 670 522 HOH HOH . 
F 6 HOH A 71 671 549 HOH HOH . 
F 6 HOH A 72 672 551 HOH HOH . 
F 6 HOH A 73 673 27 HOH HOH . 
F 6 HOH A 74 674 542 HOH HOH . 
F 6 HOH A 75 675 535 HOH HOH . 
F 6 HOH A 76 676 62 HOH HOH . 
F 6 HOH A 77 677 507 HOH HOH . 
F 6 HOH A 78 678 541 HOH HOH . 
F 6 HOH A 79 679 55 HOH HOH . 
F 6 HOH A 80 680 513 HOH HOH . 
F 6 HOH A 81 681 58 HOH HOH . 
F 6 HOH A 82 682 17 HOH HOH . 
F 6 HOH A 83 683 18 HOH HOH . 
F 6 HOH A 84 684 10 HOH HOH . 
F 6 HOH A 85 685 42 HOH HOH . 
F 6 HOH A 86 686 61 HOH HOH . 
F 6 HOH A 87 687 26 HOH HOH . 
F 6 HOH A 88 688 45 HOH HOH . 
F 6 HOH A 89 689 54 HOH HOH . 
F 6 HOH A 90 690 39 HOH HOH . 
F 6 HOH A 91 691 52 HOH HOH . 
F 6 HOH A 92 692 32 HOH HOH . 
F 6 HOH A 93 693 1 HOH HOH . 
F 6 HOH A 94 694 25 HOH HOH . 
F 6 HOH A 95 695 38 HOH HOH . 
F 6 HOH A 96 696 37 HOH HOH . 
F 6 HOH A 97 697 31 HOH HOH . 
F 6 HOH A 98 698 519 HOH HOH . 
F 6 HOH A 99 699 29 HOH HOH . 
F 6 HOH A 100 700 53 HOH HOH . 
F 6 HOH A 101 701 46 HOH HOH . 
F 6 HOH A 102 702 15 HOH HOH . 
F 6 HOH A 103 703 552 HOH HOH . 
F 6 HOH A 104 704 554 HOH HOH . 
F 6 HOH A 105 705 48 HOH HOH . 
F 6 HOH A 106 706 550 HOH HOH . 
F 6 HOH A 107 707 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . E 5 -53.409 14.126 43.312 1 48.36 ? C1 RET 504 A 1 
HETATM 2 C C2 RET . . . E 5 -54.531 14.938 43.965 1 46.82 ? C2 RET 504 A 1 
HETATM 3 C C3 RET . . . E 5 -55.901 14.374 43.675 1 46.17 ? C3 RET 504 A 1 
HETATM 4 C C4 RET . . . E 5 -56.159 14.299 42.189 1 44.8 ? C4 RET 504 A 1 
HETATM 5 C C5 RET . . . E 5 -54.961 13.998 41.349 1 45.14 ? C5 RET 504 A 1 
HETATM 6 C C6 RET . . . E 5 -53.699 13.911 41.835 1 46.53 ? C6 RET 504 A 1 
HETATM 7 C C7 RET . . . E 5 -52.544 13.623 40.972 1 47.94 ? C7 RET 504 A 1 
HETATM 8 C C8 RET . . . E 5 -51.663 12.607 41.084 1 48.95 ? C8 RET 504 A 1 
HETATM 9 C C9 RET . . . E 5 -50.667 12.23 40.09 1 50.26 ? C9 RET 504 A 1 
HETATM 10 C C10 RET . . . E 5 -49.494 11.712 40.528 1 52.19 ? C10 RET 504 A 1 
HETATM 11 C C11 RET . . . E 5 -48.515 11.047 39.697 1 54.14 ? C11 RET 504 A 1 
HETATM 12 C C12 RET . . . E 5 -47.287 10.639 40.068 1 55.37 ? C12 RET 504 A 1 
HETATM 13 C C13 RET . . . E 5 -46.339 9.882 39.261 1 56.53 ? C13 RET 504 A 1 
HETATM 14 C C14 RET . . . E 5 -45.019 9.902 39.523 1 58.22 ? C14 RET 504 A 1 
HETATM 15 C C15 RET . . . E 5 -44.373 9.041 40.557 1 59.77 ? C15 RET 504 A 1 
HETATM 16 C C16 RET . . . E 5 -52.12 14.918 43.534 1 50.79 ? C16 RET 504 A 1 
HETATM 17 C C17 RET . . . E 5 -53.301 12.781 44.032 1 48.7 ? C17 RET 504 A 1 
HETATM 18 C C18 RET . . . E 5 -55.308 13.806 39.916 1 44.89 ? C18 RET 504 A 1 
HETATM 19 C C19 RET . . . E 5 -51.17 12.005 38.71 1 48.98 ? C19 RET 504 A 1 
HETATM 20 C C20 RET . . . E 5 -46.847 9.49 37.921 1 52.71 ? C20 RET 504 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#