data_8RTH # _model_server_result.job_id arfh1A_6kG1P8TzPQO-BpA _model_server_result.datetime_utc '2024-12-08 09:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":701}' # _entry.id 8RTH # _exptl.entry_id 8RTH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 228.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RTH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 641 A LYS 641 1_555 M C11 BTI . A BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 C NZ LYS 641 C LYS 641 1_555 N C11 BTI . C BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 E NZ LYS 641 E LYS 641 1_555 O C11 BTI . E BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 G NZ LYS 641 G LYS 641 1_555 P C11 BTI . G BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 I NZ LYS 641 I LYS 641 1_555 Q C11 BTI . I BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 K NZ LYS 641 K LYS 641 1_555 R C11 BTI . K BTI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C10 H16 N2 O2 S' _chem_comp.formula_weight 228.311 _chem_comp.id BTI _chem_comp.mon_nstd_flag . _chem_comp.name 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTI doub 70 n n C11 C10 BTI sing 71 n n C11 H11 BTI sing 72 n n C10 C9 BTI sing 73 n n C10 H102 BTI sing 74 n n C10 H103 BTI sing 75 n n C9 C8 BTI sing 76 n n C9 H92 BTI sing 77 n n C9 H93 BTI sing 78 n n C8 C7 BTI sing 79 n n C8 H82 BTI sing 80 n n C8 H83 BTI sing 81 n n C7 C2 BTI sing 82 n n C7 H72 BTI sing 83 n n C7 H73 BTI sing 84 n n C2 S1 BTI sing 85 n n C2 C4 BTI sing 86 n n C2 H2 BTI sing 87 n n S1 C6 BTI sing 88 n n C6 C5 BTI sing 89 n n C6 H62 BTI sing 90 n n C6 H63 BTI sing 91 n n C5 N3 BTI sing 92 n n C5 C4 BTI sing 93 n n C5 H5 BTI sing 94 n n N3 C3 BTI sing 95 n n N3 HN3 BTI sing 96 n n C3 O3 BTI doub 97 n n C3 N2 BTI sing 98 n n N2 C4 BTI sing 99 n n N2 HN2 BTI sing 100 n n C4 H4 BTI sing 101 n n # _atom_sites.entry_id 8RTH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 BTI A 1 701 701 BTI BTI . N 3 BTI C 1 701 701 BTI BTI . O 3 BTI E 1 701 701 BTI BTI . P 3 BTI G 1 701 701 BTI BTI . Q 3 BTI I 1 701 701 BTI BTI . R 3 BTI K 1 701 701 BTI BTI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTI . . . R 3 251.066 268.603 229.593 1 107.99 ? C11 BTI 701 K 1 HETATM 2 O O11 BTI . . . R 3 250.172 268.645 230.401 1 109.71 ? O11 BTI 701 K 1 HETATM 3 C C10 BTI . . . R 3 251.201 267.576 228.517 1 103.56 ? C10 BTI 701 K 1 HETATM 4 C C9 BTI . . . R 3 252.327 266.596 228.831 1 105.4 ? C9 BTI 701 K 1 HETATM 5 C C8 BTI . . . R 3 252.08 265.227 228.215 1 108.55 ? C8 BTI 701 K 1 HETATM 6 C C7 BTI . . . R 3 251.054 264.42 228.997 1 104.47 ? C7 BTI 701 K 1 HETATM 7 C C2 BTI . . . R 3 251.476 262.978 229.2 1 104.1 ? C2 BTI 701 K 1 HETATM 8 S S1 BTI . . . R 3 252.462 262.337 227.811 1 116.96 ? S1 BTI 701 K 1 HETATM 9 C C6 BTI . . . R 3 252.283 260.679 228.508 1 100.67 ? C6 BTI 701 K 1 HETATM 10 C C5 BTI . . . R 3 250.817 260.569 228.938 1 101.75 ? C5 BTI 701 K 1 HETATM 11 N N3 BTI . . . R 3 249.925 260.228 227.863 1 104.66 ? N3 BTI 701 K 1 HETATM 12 C C3 BTI . . . R 3 249.009 261.185 227.58 1 100.95 ? C3 BTI 701 K 1 HETATM 13 O O3 BTI . . . R 3 248.148 261.134 226.716 1 98.46 ? O3 BTI 701 K 1 HETATM 14 N N2 BTI . . . R 3 249.227 262.218 228.438 1 104.47 ? N2 BTI 701 K 1 HETATM 15 C C4 BTI . . . R 3 250.318 261.983 229.35 1 104.35 ? C4 BTI 701 K 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 134 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #