data_8RU0 # _model_server_result.job_id LkC0K9MuWOJOp4WmskSNpA _model_server_result.datetime_utc '2024-11-10 01:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ru0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 8RU0 # _exptl.entry_id 8RU0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RU0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 B GLU 72 1_555 A N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C HIC 73 B HIC 73 1_555 A N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C GLU 72 A GLU 72 1_555 B N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C HIC 73 A HIC 73 1_555 B N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 F MG MG . B MG 402 1_555 G O2 PO4 . B PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 H O1B ADP . A ADP 401 1_555 I MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 I MG MG . A MG 402 1_555 J O2 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc4 K O1B ADP . C ADP 401 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc5 L MG MG . C MG 402 1_555 M O2 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 N MG MG . D MG 401 1_555 O O1B ATP . D ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc7 N MG MG . D MG 401 1_555 O O1G ATP . D ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8RU0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP B 1 401 401 ADP ADP . F 3 MG B 1 402 402 MG MG . G 4 PO4 B 1 403 403 PO4 PO4 . H 2 ADP A 1 401 401 ADP ADP . I 3 MG A 1 402 402 MG MG . J 4 PO4 A 1 403 403 PO4 PO4 . K 2 ADP C 1 401 401 ADP ADP . L 3 MG C 1 402 402 MG MG . M 4 PO4 C 1 403 403 PO4 PO4 . N 3 MG D 1 401 402 MG MG . O 5 ATP D 1 402 403 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 5 150.47 155.226 131.799 1 98.71 ? PG ATP 402 D 1 HETATM 2 O O1G ATP . . . O 5 150.085 154.086 130.918 1 93.12 ? O1G ATP 402 D 1 HETATM 3 O O2G ATP . . . O 5 151.763 154.988 132.584 1 90.37 ? O2G ATP 402 D 1 HETATM 4 O O3G ATP . . . O 5 150.572 156.565 131.061 1 91.88 ? O3G ATP 402 D 1 HETATM 5 P PB ATP . . . O 5 148.368 154.642 133.852 1 79.2 ? PB ATP 402 D 1 HETATM 6 O O1B ATP . . . O 5 147.676 153.572 133.106 1 85.78 ? O1B ATP 402 D 1 HETATM 7 O O2B ATP . . . O 5 149.165 154.19 135.074 1 78.08 ? O2B ATP 402 D 1 HETATM 8 O O3B ATP . . . O 5 149.357 155.469 132.921 1 81.6 ? O3B ATP 402 D 1 HETATM 9 P PA ATP . . . O 5 145.864 156.212 134.017 1 70.59 ? PA ATP 402 D 1 HETATM 10 O O1A ATP . . . O 5 144.892 155.176 134.419 1 77.39 ? O1A ATP 402 D 1 HETATM 11 O O2A ATP . . . O 5 145.815 156.6 132.54 1 73.18 ? O2A ATP 402 D 1 HETATM 12 O O3A ATP . . . O 5 147.359 155.773 134.338 1 74.76 ? O3A ATP 402 D 1 HETATM 13 O O5' ATP . . . O 5 145.695 157.522 134.882 1 78.07 ? O5' ATP 402 D 1 HETATM 14 C C5' ATP . . . O 5 146.047 157.545 136.281 1 71.63 ? C5' ATP 402 D 1 HETATM 15 C C4' ATP . . . O 5 146.634 158.894 136.611 1 70.36 ? C4' ATP 402 D 1 HETATM 16 O O4' ATP . . . O 5 145.634 159.918 136.41 1 74.35 ? O4' ATP 402 D 1 HETATM 17 C C3' ATP . . . O 5 147.107 159.061 138.052 1 72 ? C3' ATP 402 D 1 HETATM 18 O O3' ATP . . . O 5 148.202 159.967 138.127 1 81.6 ? O3' ATP 402 D 1 HETATM 19 C C2' ATP . . . O 5 145.862 159.616 138.744 1 76 ? C2' ATP 402 D 1 HETATM 20 O O2' ATP . . . O 5 146.197 160.386 139.892 1 83.96 ? O2' ATP 402 D 1 HETATM 21 C C1' ATP . . . O 5 145.284 160.512 137.647 1 73.9 ? C1' ATP 402 D 1 HETATM 22 N N9 ATP . . . O 5 143.833 160.653 137.695 1 68.36 ? N9 ATP 402 D 1 HETATM 23 C C8 ATP . . . O 5 142.908 159.646 137.797 1 71.17 ? C8 ATP 402 D 1 HETATM 24 N N7 ATP . . . O 5 141.665 160.062 137.818 1 70.42 ? N7 ATP 402 D 1 HETATM 25 C C5 ATP . . . O 5 141.778 161.44 137.723 1 61.37 ? C5 ATP 402 D 1 HETATM 26 C C6 ATP . . . O 5 140.821 162.473 137.692 1 60.83 ? C6 ATP 402 D 1 HETATM 27 N N6 ATP . . . O 5 139.502 162.267 137.757 1 64.43 ? N6 ATP 402 D 1 HETATM 28 N N1 ATP . . . O 5 141.27 163.743 137.591 1 64.54 ? N1 ATP 402 D 1 HETATM 29 C C2 ATP . . . O 5 142.587 163.956 137.525 1 66.98 ? C2 ATP 402 D 1 HETATM 30 N N3 ATP . . . O 5 143.581 163.065 137.546 1 66.16 ? N3 ATP 402 D 1 HETATM 31 C C4 ATP . . . O 5 143.109 161.819 137.646 1 62.48 ? C4 ATP 402 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #