data_8RU5 # _model_server_result.job_id eqJ8sZbwQ5RaeowMp8olmw _model_server_result.datetime_utc '2025-03-04 14:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ru5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8RU5 # _exptl.entry_id 8RU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RU5 _cell.length_a 38.4 _cell.length_b 47.76 _cell.length_c 80.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8RU5 _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1201 1 EDO EDO . C 2 EDO A 1 1202 2 EDO EDO . D 3 HOH A 1 1301 161 HOH HOH . D 3 HOH A 2 1302 160 HOH HOH . D 3 HOH A 3 1303 86 HOH HOH . D 3 HOH A 4 1304 119 HOH HOH . D 3 HOH A 5 1305 63 HOH HOH . D 3 HOH A 6 1306 65 HOH HOH . D 3 HOH A 7 1307 4 HOH HOH . D 3 HOH A 8 1308 25 HOH HOH . D 3 HOH A 9 1309 85 HOH HOH . D 3 HOH A 10 1310 134 HOH HOH . D 3 HOH A 11 1311 159 HOH HOH . D 3 HOH A 12 1312 76 HOH HOH . D 3 HOH A 13 1313 17 HOH HOH . D 3 HOH A 14 1314 109 HOH HOH . D 3 HOH A 15 1315 53 HOH HOH . D 3 HOH A 16 1316 36 HOH HOH . D 3 HOH A 17 1317 68 HOH HOH . D 3 HOH A 18 1318 91 HOH HOH . D 3 HOH A 19 1319 9 HOH HOH . D 3 HOH A 20 1320 73 HOH HOH . D 3 HOH A 21 1321 28 HOH HOH . D 3 HOH A 22 1322 29 HOH HOH . D 3 HOH A 23 1323 39 HOH HOH . D 3 HOH A 24 1324 33 HOH HOH . D 3 HOH A 25 1325 88 HOH HOH . D 3 HOH A 26 1326 97 HOH HOH . D 3 HOH A 27 1327 49 HOH HOH . D 3 HOH A 28 1328 34 HOH HOH . D 3 HOH A 29 1329 38 HOH HOH . D 3 HOH A 30 1330 18 HOH HOH . D 3 HOH A 31 1331 20 HOH HOH . D 3 HOH A 32 1332 3 HOH HOH . D 3 HOH A 33 1333 13 HOH HOH . D 3 HOH A 34 1334 81 HOH HOH . D 3 HOH A 35 1335 15 HOH HOH . D 3 HOH A 36 1336 148 HOH HOH . D 3 HOH A 37 1337 144 HOH HOH . D 3 HOH A 38 1338 60 HOH HOH . D 3 HOH A 39 1339 41 HOH HOH . D 3 HOH A 40 1340 70 HOH HOH . D 3 HOH A 41 1341 31 HOH HOH . D 3 HOH A 42 1342 24 HOH HOH . D 3 HOH A 43 1343 40 HOH HOH . D 3 HOH A 44 1344 10 HOH HOH . D 3 HOH A 45 1345 51 HOH HOH . D 3 HOH A 46 1346 69 HOH HOH . D 3 HOH A 47 1347 8 HOH HOH . D 3 HOH A 48 1348 59 HOH HOH . D 3 HOH A 49 1349 35 HOH HOH . D 3 HOH A 50 1350 23 HOH HOH . D 3 HOH A 51 1351 2 HOH HOH . D 3 HOH A 52 1352 14 HOH HOH . D 3 HOH A 53 1353 117 HOH HOH . D 3 HOH A 54 1354 11 HOH HOH . D 3 HOH A 55 1355 19 HOH HOH . D 3 HOH A 56 1356 54 HOH HOH . D 3 HOH A 57 1357 122 HOH HOH . D 3 HOH A 58 1358 26 HOH HOH . D 3 HOH A 59 1359 84 HOH HOH . D 3 HOH A 60 1360 64 HOH HOH . D 3 HOH A 61 1361 89 HOH HOH . D 3 HOH A 62 1362 99 HOH HOH . D 3 HOH A 63 1363 16 HOH HOH . D 3 HOH A 64 1364 37 HOH HOH . D 3 HOH A 65 1365 5 HOH HOH . D 3 HOH A 66 1366 30 HOH HOH . D 3 HOH A 67 1367 46 HOH HOH . D 3 HOH A 68 1368 103 HOH HOH . D 3 HOH A 69 1369 22 HOH HOH . D 3 HOH A 70 1370 129 HOH HOH . D 3 HOH A 71 1371 118 HOH HOH . D 3 HOH A 72 1372 12 HOH HOH . D 3 HOH A 73 1373 77 HOH HOH . D 3 HOH A 74 1374 98 HOH HOH . D 3 HOH A 75 1375 1 HOH HOH . D 3 HOH A 76 1376 111 HOH HOH . D 3 HOH A 77 1377 67 HOH HOH . D 3 HOH A 78 1378 32 HOH HOH . D 3 HOH A 79 1379 149 HOH HOH . D 3 HOH A 80 1380 7 HOH HOH . D 3 HOH A 81 1381 107 HOH HOH . D 3 HOH A 82 1382 92 HOH HOH . D 3 HOH A 83 1383 95 HOH HOH . D 3 HOH A 84 1384 131 HOH HOH . D 3 HOH A 85 1385 135 HOH HOH . D 3 HOH A 86 1386 62 HOH HOH . D 3 HOH A 87 1387 6 HOH HOH . D 3 HOH A 88 1388 143 HOH HOH . D 3 HOH A 89 1389 138 HOH HOH . D 3 HOH A 90 1390 58 HOH HOH . D 3 HOH A 91 1391 137 HOH HOH . D 3 HOH A 92 1392 82 HOH HOH . D 3 HOH A 93 1393 43 HOH HOH . D 3 HOH A 94 1394 48 HOH HOH . D 3 HOH A 95 1395 145 HOH HOH . D 3 HOH A 96 1396 157 HOH HOH . D 3 HOH A 97 1397 128 HOH HOH . D 3 HOH A 98 1398 57 HOH HOH . D 3 HOH A 99 1399 155 HOH HOH . D 3 HOH A 100 1400 52 HOH HOH . D 3 HOH A 101 1401 72 HOH HOH . D 3 HOH A 102 1402 21 HOH HOH . D 3 HOH A 103 1403 105 HOH HOH . D 3 HOH A 104 1404 146 HOH HOH . D 3 HOH A 105 1405 110 HOH HOH . D 3 HOH A 106 1406 66 HOH HOH . D 3 HOH A 107 1407 27 HOH HOH . D 3 HOH A 108 1408 102 HOH HOH . D 3 HOH A 109 1409 93 HOH HOH . D 3 HOH A 110 1410 115 HOH HOH . D 3 HOH A 111 1411 108 HOH HOH . D 3 HOH A 112 1412 141 HOH HOH . D 3 HOH A 113 1413 56 HOH HOH . D 3 HOH A 114 1414 42 HOH HOH . D 3 HOH A 115 1415 94 HOH HOH . D 3 HOH A 116 1416 78 HOH HOH . D 3 HOH A 117 1417 120 HOH HOH . D 3 HOH A 118 1418 55 HOH HOH . D 3 HOH A 119 1419 142 HOH HOH . D 3 HOH A 120 1420 96 HOH HOH . D 3 HOH A 121 1421 133 HOH HOH . D 3 HOH A 122 1422 132 HOH HOH . D 3 HOH A 123 1423 80 HOH HOH . D 3 HOH A 124 1424 112 HOH HOH . D 3 HOH A 125 1425 71 HOH HOH . D 3 HOH A 126 1426 75 HOH HOH . D 3 HOH A 127 1427 127 HOH HOH . D 3 HOH A 128 1428 45 HOH HOH . D 3 HOH A 129 1429 101 HOH HOH . D 3 HOH A 130 1430 44 HOH HOH . D 3 HOH A 131 1431 125 HOH HOH . D 3 HOH A 132 1432 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -4.749 -5.97 -11.692 1 27.89 0 C1 EDO 1201 A 1 HETATM 2 O O1 EDO . . . B 2 -5.687 -5.754 -12.757 1 27.52 0 O1 EDO 1201 A 1 HETATM 3 C C2 EDO . . . B 2 -4.053 -7.313 -11.848 1 30.22 0 C2 EDO 1201 A 1 HETATM 4 O O2 EDO . . . B 2 -5.028 -8.339 -11.615 1 33.45 0 O2 EDO 1201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #