data_8RUT
#
_model_server_result.job_id            UAyQ4HpcxvuBRIFjG7L5cw 
_model_server_result.datetime_utc      '2025-06-29 01:07:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rut 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    8RUT 
#
_exptl.entry_id    8RUT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RUT 
_cell.length_a            131.24 
_cell.length_b            38.34 
_cell.length_c            42.98 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RUT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 133 A HIS 313 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc2 A OD1 ASP 135 A ASP 315 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc3 A NE2 HIS 194 A HIS 374 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc4 D O2 AKG . A AKG 802 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc5 D O5 AKG . A AKG 802 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc6 E FE FE . A FE 803 1_555 F O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 7 n n 
C1 O2 AKG sing 8 n n 
C1 C2 AKG sing 9 n n 
O2 HO2 AKG sing 10 n n 
C2 O5 AKG doub 11 n n 
C2 C3 AKG sing 12 n n 
C3 C4 AKG sing 13 n n 
C3 H31 AKG sing 14 n n 
C3 H32 AKG sing 15 n n 
C4 C5 AKG sing 16 n n 
C4 H41 AKG sing 17 n n 
C4 H42 AKG sing 18 n n 
C5 O3 AKG doub 19 n n 
C5 O4 AKG sing 20 n n 
O4 HO4 AKG sing 21 n n 
#
_atom_sites.entry_id                     8RUT 
_atom_sites.fract_transf_matrix[1][1]    0.00762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 801 801 ACT ACT . 
D 4 AKG A 1 802 802 AKG AKG . 
E 5 FE A 1 803 1 FE FE . 
F 6 HOH A 1 901 81 HOH HOH . 
F 6 HOH A 2 902 175 HOH HOH . 
F 6 HOH A 3 903 182 HOH HOH . 
F 6 HOH A 4 904 148 HOH HOH . 
F 6 HOH A 5 905 56 HOH HOH . 
F 6 HOH A 6 906 95 HOH HOH . 
F 6 HOH A 7 907 10 HOH HOH . 
F 6 HOH A 8 908 146 HOH HOH . 
F 6 HOH A 9 909 35 HOH HOH . 
F 6 HOH A 10 910 86 HOH HOH . 
F 6 HOH A 11 911 54 HOH HOH . 
F 6 HOH A 12 912 64 HOH HOH . 
F 6 HOH A 13 913 67 HOH HOH . 
F 6 HOH A 14 914 126 HOH HOH . 
F 6 HOH A 15 915 43 HOH HOH . 
F 6 HOH A 16 916 116 HOH HOH . 
F 6 HOH A 17 917 77 HOH HOH . 
F 6 HOH A 18 918 164 HOH HOH . 
F 6 HOH A 19 919 58 HOH HOH . 
F 6 HOH A 20 920 135 HOH HOH . 
F 6 HOH A 21 921 145 HOH HOH . 
F 6 HOH A 22 922 185 HOH HOH . 
F 6 HOH A 23 923 128 HOH HOH . 
F 6 HOH A 24 924 144 HOH HOH . 
F 6 HOH A 25 925 68 HOH HOH . 
F 6 HOH A 26 926 170 HOH HOH . 
F 6 HOH A 27 927 87 HOH HOH . 
F 6 HOH A 28 928 85 HOH HOH . 
F 6 HOH A 29 929 112 HOH HOH . 
F 6 HOH A 30 930 121 HOH HOH . 
F 6 HOH A 31 931 39 HOH HOH . 
F 6 HOH A 32 932 23 HOH HOH . 
F 6 HOH A 33 933 28 HOH HOH . 
F 6 HOH A 34 934 190 HOH HOH . 
F 6 HOH A 35 935 38 HOH HOH . 
F 6 HOH A 36 936 165 HOH HOH . 
F 6 HOH A 37 937 133 HOH HOH . 
F 6 HOH A 38 938 66 HOH HOH . 
F 6 HOH A 39 939 111 HOH HOH . 
F 6 HOH A 40 940 48 HOH HOH . 
F 6 HOH A 41 941 60 HOH HOH . 
F 6 HOH A 42 942 90 HOH HOH . 
F 6 HOH A 43 943 57 HOH HOH . 
F 6 HOH A 44 944 6 HOH HOH . 
F 6 HOH A 45 945 19 HOH HOH . 
F 6 HOH A 46 946 105 HOH HOH . 
F 6 HOH A 47 947 102 HOH HOH . 
F 6 HOH A 48 948 9 HOH HOH . 
F 6 HOH A 49 949 168 HOH HOH . 
F 6 HOH A 50 950 61 HOH HOH . 
F 6 HOH A 51 951 177 HOH HOH . 
F 6 HOH A 52 952 162 HOH HOH . 
F 6 HOH A 53 953 20 HOH HOH . 
F 6 HOH A 54 954 27 HOH HOH . 
F 6 HOH A 55 955 91 HOH HOH . 
F 6 HOH A 56 956 17 HOH HOH . 
F 6 HOH A 57 957 40 HOH HOH . 
F 6 HOH A 58 958 176 HOH HOH . 
F 6 HOH A 59 959 139 HOH HOH . 
F 6 HOH A 60 960 51 HOH HOH . 
F 6 HOH A 61 961 99 HOH HOH . 
F 6 HOH A 62 962 63 HOH HOH . 
F 6 HOH A 63 963 22 HOH HOH . 
F 6 HOH A 64 964 11 HOH HOH . 
F 6 HOH A 65 965 1 HOH HOH . 
F 6 HOH A 66 966 41 HOH HOH . 
F 6 HOH A 67 967 186 HOH HOH . 
F 6 HOH A 68 968 8 HOH HOH . 
F 6 HOH A 69 969 74 HOH HOH . 
F 6 HOH A 70 970 78 HOH HOH . 
F 6 HOH A 71 971 55 HOH HOH . 
F 6 HOH A 72 972 161 HOH HOH . 
F 6 HOH A 73 973 118 HOH HOH . 
F 6 HOH A 74 974 89 HOH HOH . 
F 6 HOH A 75 975 26 HOH HOH . 
F 6 HOH A 76 976 107 HOH HOH . 
F 6 HOH A 77 977 188 HOH HOH . 
F 6 HOH A 78 978 100 HOH HOH . 
F 6 HOH A 79 979 83 HOH HOH . 
F 6 HOH A 80 980 103 HOH HOH . 
F 6 HOH A 81 981 45 HOH HOH . 
F 6 HOH A 82 982 101 HOH HOH . 
F 6 HOH A 83 983 18 HOH HOH . 
F 6 HOH A 84 984 25 HOH HOH . 
F 6 HOH A 85 985 131 HOH HOH . 
F 6 HOH A 86 986 33 HOH HOH . 
F 6 HOH A 87 987 2 HOH HOH . 
F 6 HOH A 88 988 12 HOH HOH . 
F 6 HOH A 89 989 5 HOH HOH . 
F 6 HOH A 90 990 143 HOH HOH . 
F 6 HOH A 91 991 59 HOH HOH . 
F 6 HOH A 92 992 76 HOH HOH . 
F 6 HOH A 93 993 21 HOH HOH . 
F 6 HOH A 94 994 71 HOH HOH . 
F 6 HOH A 95 995 30 HOH HOH . 
F 6 HOH A 96 996 65 HOH HOH . 
F 6 HOH A 97 997 34 HOH HOH . 
F 6 HOH A 98 998 47 HOH HOH . 
F 6 HOH A 99 999 46 HOH HOH . 
F 6 HOH A 100 1000 36 HOH HOH . 
F 6 HOH A 101 1001 16 HOH HOH . 
F 6 HOH A 102 1002 15 HOH HOH . 
F 6 HOH A 103 1003 75 HOH HOH . 
F 6 HOH A 104 1004 163 HOH HOH . 
F 6 HOH A 105 1005 104 HOH HOH . 
F 6 HOH A 106 1006 92 HOH HOH . 
F 6 HOH A 107 1007 53 HOH HOH . 
F 6 HOH A 108 1008 73 HOH HOH . 
F 6 HOH A 109 1009 49 HOH HOH . 
F 6 HOH A 110 1010 69 HOH HOH . 
F 6 HOH A 111 1011 123 HOH HOH . 
F 6 HOH A 112 1012 136 HOH HOH . 
F 6 HOH A 113 1013 113 HOH HOH . 
F 6 HOH A 114 1014 88 HOH HOH . 
F 6 HOH A 115 1015 147 HOH HOH . 
F 6 HOH A 116 1016 120 HOH HOH . 
F 6 HOH A 117 1017 129 HOH HOH . 
F 6 HOH A 118 1018 72 HOH HOH . 
F 6 HOH A 119 1019 44 HOH HOH . 
F 6 HOH A 120 1020 108 HOH HOH . 
F 6 HOH A 121 1021 130 HOH HOH . 
F 6 HOH A 122 1022 141 HOH HOH . 
F 6 HOH A 123 1023 50 HOH HOH . 
F 6 HOH A 124 1024 117 HOH HOH . 
F 6 HOH A 125 1025 183 HOH HOH . 
F 6 HOH A 126 1026 82 HOH HOH . 
F 6 HOH A 127 1027 180 HOH HOH . 
F 6 HOH A 128 1028 37 HOH HOH . 
F 6 HOH A 129 1029 3 HOH HOH . 
F 6 HOH A 130 1030 24 HOH HOH . 
F 6 HOH A 131 1031 122 HOH HOH . 
F 6 HOH A 132 1032 106 HOH HOH . 
F 6 HOH A 133 1033 31 HOH HOH . 
F 6 HOH A 134 1034 94 HOH HOH . 
F 6 HOH A 135 1035 42 HOH HOH . 
F 6 HOH A 136 1036 157 HOH HOH . 
F 6 HOH A 137 1037 173 HOH HOH . 
F 6 HOH A 138 1038 159 HOH HOH . 
F 6 HOH A 139 1039 179 HOH HOH . 
F 6 HOH A 140 1040 171 HOH HOH . 
F 6 HOH A 141 1041 125 HOH HOH . 
F 6 HOH A 142 1042 140 HOH HOH . 
F 6 HOH A 143 1043 124 HOH HOH . 
F 6 HOH A 144 1044 93 HOH HOH . 
F 6 HOH A 145 1045 109 HOH HOH . 
F 6 HOH A 146 1046 115 HOH HOH . 
F 6 HOH A 147 1047 167 HOH HOH . 
F 6 HOH A 148 1048 127 HOH HOH . 
F 6 HOH A 149 1049 84 HOH HOH . 
F 6 HOH A 150 1050 151 HOH HOH . 
F 6 HOH A 151 1051 153 HOH HOH . 
F 6 HOH A 152 1052 160 HOH HOH . 
F 6 HOH A 153 1053 166 HOH HOH . 
F 6 HOH A 154 1054 138 HOH HOH . 
F 6 HOH A 155 1055 169 HOH HOH . 
F 6 HOH A 156 1056 189 HOH HOH . 
F 6 HOH A 157 1057 137 HOH HOH . 
F 6 HOH A 158 1058 97 HOH HOH . 
F 6 HOH A 159 1059 114 HOH HOH . 
F 6 HOH A 160 1060 187 HOH HOH . 
F 6 HOH A 161 1061 152 HOH HOH . 
F 6 HOH A 162 1062 172 HOH HOH . 
F 6 HOH A 163 1063 191 HOH HOH . 
F 6 HOH A 164 1064 96 HOH HOH . 
F 6 HOH A 165 1065 142 HOH HOH . 
F 6 HOH A 166 1066 62 HOH HOH . 
F 6 HOH A 167 1067 178 HOH HOH . 
F 6 HOH A 168 1068 174 HOH HOH . 
F 6 HOH A 169 1069 158 HOH HOH . 
F 6 HOH A 170 1070 181 HOH HOH . 
F 6 HOH A 171 1071 32 HOH HOH . 
F 6 HOH A 172 1072 119 HOH HOH . 
F 6 HOH A 173 1073 156 HOH HOH . 
G 6 HOH B 1 601 79 HOH HOH . 
G 6 HOH B 2 602 14 HOH HOH . 
G 6 HOH B 3 603 4 HOH HOH . 
G 6 HOH B 4 604 13 HOH HOH . 
G 6 HOH B 5 605 7 HOH HOH . 
G 6 HOH B 6 606 184 HOH HOH . 
G 6 HOH B 7 607 98 HOH HOH . 
G 6 HOH B 8 608 70 HOH HOH . 
G 6 HOH B 9 609 150 HOH HOH . 
G 6 HOH B 10 610 154 HOH HOH . 
G 6 HOH B 11 611 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . D 4 21.884 12.523 13.843 1 28.25 ? C1 AKG 802 A 1 
HETATM 2 O O1 AKG . . . D 4 21.562 13.418 13.071 1 29.35 ? O1 AKG 802 A 1 
HETATM 3 O O2 AKG . . . D 4 21.464 12.427 15.078 1 23.08 ? O2 AKG 802 A 1 
HETATM 4 C C2 AKG . . . D 4 22.853 11.4 13.403 1 29.3 ? C2 AKG 802 A 1 
HETATM 5 O O5 AKG . . . D 4 23.47 10.765 14.249 1 25.59 ? O5 AKG 802 A 1 
HETATM 6 C C3 AKG . . . D 4 23.004 11.105 11.934 1 30.99 ? C3 AKG 802 A 1 
HETATM 7 C C4 AKG . . . D 4 23.536 9.707 11.672 1 32.05 ? C4 AKG 802 A 1 
HETATM 8 C C5 AKG . . . D 4 24.066 9.501 10.284 1 29.27 ? C5 AKG 802 A 1 
HETATM 9 O O3 AKG . . . D 4 23.994 10.331 9.402 1 31.12 ? O3 AKG 802 A 1 
HETATM 10 O O4 AKG . . . D 4 24.62 8.325 10.122 1 23.33 ? O4 AKG 802 A 1 
HETATM 11 H H31 AKG . . . D 4 23.619 11.749 11.549 1 37.22 ? H31 AKG 802 A 1 
HETATM 12 H H32 AKG . . . D 4 22.136 11.192 11.508 1 37.22 ? H32 AKG 802 A 1 
HETATM 13 H H41 AKG . . . D 4 22.815 9.075 11.82 1 38.5 ? H41 AKG 802 A 1 
HETATM 14 H H42 AKG . . . D 4 24.253 9.533 12.301 1 38.5 ? H42 AKG 802 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#