data_8RV4 # _model_server_result.job_id Z87-F9P-b1QyYoLOsODvzg _model_server_result.datetime_utc '2024-10-18 08:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8RV4 # _exptl.entry_id 8RV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RV4 _cell.length_a 168.545 _cell.length_b 168.545 _cell.length_c 52.174 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 77 B CYS 74 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 B SG CYS 80 B CYS 77 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 B NE2 HIS 86 B HIS 83 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 B SG CYS 93 B CYS 90 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 B SG CYS 120 B CYS 117 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 B SG CYS 123 B CYS 120 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 B SG CYS 131 B CYS 128 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc8 B SG CYS 133 B CYS 130 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 280 n n O1 C6 MES sing 281 n n C2 C3 MES sing 282 n n C2 H21 MES sing 283 n n C2 H22 MES sing 284 n n C3 N4 MES sing 285 n n C3 H31 MES sing 286 n n C3 H32 MES sing 287 n n N4 C5 MES sing 288 n n N4 C7 MES sing 289 n n N4 HN4 MES sing 290 n n C5 C6 MES sing 291 n n C5 H51 MES sing 292 n n C5 H52 MES sing 293 n n C6 H61 MES sing 294 n n C6 H62 MES sing 295 n n C7 C8 MES sing 296 n n C7 H71 MES sing 297 n n C7 H72 MES sing 298 n n C8 S MES sing 299 n n C8 H81 MES sing 300 n n C8 H82 MES sing 301 n n S O1S MES doub 302 n n S O2S MES doub 303 n n S O3S MES sing 304 n n # _atom_sites.entry_id 8RV4 _atom_sites.fract_transf_matrix[1][1] 0.005933 _atom_sites.fract_transf_matrix[1][2] 0.003425 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES A 1 301 301 MES MES . D 4 A1H3C A 1 302 303 A1H3C OBV . E 5 ZN B 1 201 201 ZN ZN . F 5 ZN B 1 202 202 ZN ZN . G 6 HOH A 1 401 394 HOH HOH . G 6 HOH A 2 402 358 HOH HOH . G 6 HOH A 3 403 355 HOH HOH . G 6 HOH A 4 404 368 HOH HOH . G 6 HOH A 5 405 320 HOH HOH . G 6 HOH A 6 406 354 HOH HOH . G 6 HOH A 7 407 321 HOH HOH . G 6 HOH A 8 408 319 HOH HOH . G 6 HOH A 9 409 338 HOH HOH . G 6 HOH A 10 410 343 HOH HOH . G 6 HOH A 11 411 353 HOH HOH . G 6 HOH A 12 412 357 HOH HOH . G 6 HOH A 13 413 332 HOH HOH . G 6 HOH A 14 414 315 HOH HOH . G 6 HOH A 15 415 318 HOH HOH . G 6 HOH A 16 416 348 HOH HOH . G 6 HOH A 17 417 314 HOH HOH . G 6 HOH A 18 418 381 HOH HOH . G 6 HOH A 19 419 342 HOH HOH . G 6 HOH A 20 420 328 HOH HOH . G 6 HOH A 21 421 356 HOH HOH . G 6 HOH A 22 422 341 HOH HOH . G 6 HOH A 23 423 366 HOH HOH . G 6 HOH A 24 424 378 HOH HOH . G 6 HOH A 25 425 367 HOH HOH . G 6 HOH A 26 426 380 HOH HOH . G 6 HOH A 27 427 388 HOH HOH . G 6 HOH A 28 428 370 HOH HOH . G 6 HOH A 29 429 393 HOH HOH . G 6 HOH A 30 430 362 HOH HOH . G 6 HOH A 31 431 329 HOH HOH . G 6 HOH A 32 432 326 HOH HOH . G 6 HOH A 33 433 323 HOH HOH . G 6 HOH A 34 434 390 HOH HOH . G 6 HOH A 35 435 331 HOH HOH . G 6 HOH A 36 436 335 HOH HOH . G 6 HOH A 37 437 364 HOH HOH . G 6 HOH A 38 438 372 HOH HOH . G 6 HOH A 39 439 359 HOH HOH . G 6 HOH A 40 440 313 HOH HOH . G 6 HOH A 41 441 336 HOH HOH . G 6 HOH A 42 442 371 HOH HOH . G 6 HOH A 43 443 346 HOH HOH . G 6 HOH A 44 444 361 HOH HOH . G 6 HOH A 45 445 396 HOH HOH . G 6 HOH A 46 446 363 HOH HOH . G 6 HOH A 47 447 384 HOH HOH . G 6 HOH A 48 448 386 HOH HOH . G 6 HOH A 49 449 325 HOH HOH . G 6 HOH A 50 450 334 HOH HOH . G 6 HOH A 51 451 327 HOH HOH . G 6 HOH A 52 452 387 HOH HOH . G 6 HOH A 53 453 352 HOH HOH . G 6 HOH A 54 454 322 HOH HOH . G 6 HOH A 55 455 312 HOH HOH . G 6 HOH A 56 456 339 HOH HOH . G 6 HOH A 57 457 376 HOH HOH . G 6 HOH A 58 458 333 HOH HOH . G 6 HOH A 59 459 373 HOH HOH . G 6 HOH A 60 460 369 HOH HOH . G 6 HOH A 61 461 385 HOH HOH . G 6 HOH A 62 462 392 HOH HOH . G 6 HOH A 63 463 345 HOH HOH . G 6 HOH A 64 464 389 HOH HOH . G 6 HOH A 65 465 379 HOH HOH . G 6 HOH A 66 466 395 HOH HOH . G 6 HOH A 67 467 391 HOH HOH . G 6 HOH A 68 468 360 HOH HOH . G 6 HOH A 69 469 377 HOH HOH . H 6 HOH B 1 301 316 HOH HOH . H 6 HOH B 2 302 382 HOH HOH . H 6 HOH B 3 303 324 HOH HOH . H 6 HOH B 4 304 317 HOH HOH . H 6 HOH B 5 305 375 HOH HOH . H 6 HOH B 6 306 383 HOH HOH . H 6 HOH B 7 307 344 HOH HOH . H 6 HOH B 8 308 350 HOH HOH . H 6 HOH B 9 309 365 HOH HOH . H 6 HOH B 10 310 330 HOH HOH . H 6 HOH B 11 311 349 HOH HOH . H 6 HOH B 12 312 337 HOH HOH . H 6 HOH B 13 313 374 HOH HOH . H 6 HOH B 14 314 340 HOH HOH . H 6 HOH B 15 315 347 HOH HOH . H 6 HOH B 16 316 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . C 3 70.133 -35.41 16.309 1 48.18 ? O1 MES 301 A 1 HETATM 2 C C2 MES . . . C 3 70.421 -36.808 16.506 1 49.83 ? C2 MES 301 A 1 HETATM 3 C C3 MES . . . C 3 70.175 -37.342 17.92 1 43.99 ? C3 MES 301 A 1 HETATM 4 N N4 MES . . . C 3 68.914 -36.799 18.387 1 50.52 ? N4 MES 301 A 1 HETATM 5 C C5 MES . . . C 3 68.74 -35.35 18.328 1 45.95 ? C5 MES 301 A 1 HETATM 6 C C6 MES . . . C 3 68.922 -34.918 16.88 1 45.31 ? C6 MES 301 A 1 HETATM 7 C C7 MES . . . C 3 68.282 -37.435 19.543 1 54.42 ? C7 MES 301 A 1 HETATM 8 C C8 MES . . . C 3 68.632 -38.915 19.491 1 61.27 ? C8 MES 301 A 1 HETATM 9 S S MES . . . C 3 68.219 -39.716 20.905 1 82.75 ? S MES 301 A 1 HETATM 10 O O1S MES . . . C 3 67.251 -39.011 21.828 1 49.73 ? O1S MES 301 A 1 HETATM 11 O O2S MES . . . C 3 69.515 -39.963 21.594 1 61.48 ? O2S MES 301 A 1 HETATM 12 O O3S MES . . . C 3 67.621 -41.005 20.472 1 69.65 ? O3S MES 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #