data_8RV6 # _model_server_result.job_id nKuvsUOYm7ydQj0JIzKViA _model_server_result.datetime_utc '2024-11-13 17:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 8RV6 # _exptl.entry_id 8RV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RV6 _cell.length_a 171.031 _cell.length_b 171.031 _cell.length_c 51.867 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 77 B CYS 74 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 B SG CYS 80 B CYS 77 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 B NE2 HIS 86 B HIS 83 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 B SG CYS 93 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc5 B SG CYS 120 B CYS 117 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 B SG CYS 123 B CYS 120 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 B SG CYS 131 B CYS 128 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc8 B SG CYS 133 B CYS 130 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc9 H ZN ZN . B ZN 202 1_555 K O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 192 n n C1 C2 GOL sing 193 n n C1 H11 GOL sing 194 n n C1 H12 GOL sing 195 n n O1 HO1 GOL sing 196 n n C2 O2 GOL sing 197 n n C2 C3 GOL sing 198 n n C2 H2 GOL sing 199 n n O2 HO2 GOL sing 200 n n C3 O3 GOL sing 201 n n C3 H31 GOL sing 202 n n C3 H32 GOL sing 203 n n O3 HO3 GOL sing 204 n n # _atom_sites.entry_id 8RV6 _atom_sites.fract_transf_matrix[1][1] 0.005847 _atom_sites.fract_transf_matrix[1][2] 0.003376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES A 1 301 301 MES MES . D 4 A1H3B A 1 302 302 A1H3B o23 . E 5 GOL A 1 303 303 GOL GOL . F 5 GOL A 1 304 304 GOL GOL . G 6 ZN B 1 201 201 ZN ZN . H 6 ZN B 1 202 202 ZN ZN . I 5 GOL B 1 203 203 GOL GOL . J 7 HOH A 1 401 411 HOH HOH . J 7 HOH A 2 402 410 HOH HOH . J 7 HOH A 3 403 377 HOH HOH . J 7 HOH A 4 404 331 HOH HOH . J 7 HOH A 5 405 323 HOH HOH . J 7 HOH A 6 406 344 HOH HOH . J 7 HOH A 7 407 373 HOH HOH . J 7 HOH A 8 408 346 HOH HOH . J 7 HOH A 9 409 353 HOH HOH . J 7 HOH A 10 410 340 HOH HOH . J 7 HOH A 11 411 343 HOH HOH . J 7 HOH A 12 412 367 HOH HOH . J 7 HOH A 13 413 334 HOH HOH . J 7 HOH A 14 414 342 HOH HOH . J 7 HOH A 15 415 429 HOH HOH . J 7 HOH A 16 416 363 HOH HOH . J 7 HOH A 17 417 366 HOH HOH . J 7 HOH A 18 418 357 HOH HOH . J 7 HOH A 19 419 324 HOH HOH . J 7 HOH A 20 420 432 HOH HOH . J 7 HOH A 21 421 336 HOH HOH . J 7 HOH A 22 422 402 HOH HOH . J 7 HOH A 23 423 405 HOH HOH . J 7 HOH A 24 424 372 HOH HOH . J 7 HOH A 25 425 457 HOH HOH . J 7 HOH A 26 426 337 HOH HOH . J 7 HOH A 27 427 439 HOH HOH . J 7 HOH A 28 428 369 HOH HOH . J 7 HOH A 29 429 355 HOH HOH . J 7 HOH A 30 430 431 HOH HOH . J 7 HOH A 31 431 398 HOH HOH . J 7 HOH A 32 432 351 HOH HOH . J 7 HOH A 33 433 319 HOH HOH . J 7 HOH A 34 434 361 HOH HOH . J 7 HOH A 35 435 341 HOH HOH . J 7 HOH A 36 436 435 HOH HOH . J 7 HOH A 37 437 316 HOH HOH . J 7 HOH A 38 438 322 HOH HOH . J 7 HOH A 39 439 350 HOH HOH . J 7 HOH A 40 440 407 HOH HOH . J 7 HOH A 41 441 345 HOH HOH . J 7 HOH A 42 442 375 HOH HOH . J 7 HOH A 43 443 381 HOH HOH . J 7 HOH A 44 444 347 HOH HOH . J 7 HOH A 45 445 419 HOH HOH . J 7 HOH A 46 446 329 HOH HOH . J 7 HOH A 47 447 335 HOH HOH . J 7 HOH A 48 448 385 HOH HOH . J 7 HOH A 49 449 430 HOH HOH . J 7 HOH A 50 450 332 HOH HOH . J 7 HOH A 51 451 333 HOH HOH . J 7 HOH A 52 452 382 HOH HOH . J 7 HOH A 53 453 434 HOH HOH . J 7 HOH A 54 454 348 HOH HOH . J 7 HOH A 55 455 376 HOH HOH . J 7 HOH A 56 456 388 HOH HOH . J 7 HOH A 57 457 380 HOH HOH . J 7 HOH A 58 458 437 HOH HOH . J 7 HOH A 59 459 330 HOH HOH . J 7 HOH A 60 460 318 HOH HOH . J 7 HOH A 61 461 338 HOH HOH . J 7 HOH A 62 462 393 HOH HOH . J 7 HOH A 63 463 358 HOH HOH . J 7 HOH A 64 464 320 HOH HOH . J 7 HOH A 65 465 406 HOH HOH . J 7 HOH A 66 466 321 HOH HOH . J 7 HOH A 67 467 364 HOH HOH . J 7 HOH A 68 468 436 HOH HOH . J 7 HOH A 69 469 317 HOH HOH . J 7 HOH A 70 470 422 HOH HOH . J 7 HOH A 71 471 421 HOH HOH . J 7 HOH A 72 472 386 HOH HOH . J 7 HOH A 73 473 359 HOH HOH . J 7 HOH A 74 474 383 HOH HOH . J 7 HOH A 75 475 394 HOH HOH . J 7 HOH A 76 476 416 HOH HOH . J 7 HOH A 77 477 315 HOH HOH . J 7 HOH A 78 478 328 HOH HOH . J 7 HOH A 79 479 454 HOH HOH . J 7 HOH A 80 480 390 HOH HOH . J 7 HOH A 81 481 378 HOH HOH . J 7 HOH A 82 482 354 HOH HOH . J 7 HOH A 83 483 362 HOH HOH . J 7 HOH A 84 484 404 HOH HOH . J 7 HOH A 85 485 408 HOH HOH . J 7 HOH A 86 486 401 HOH HOH . J 7 HOH A 87 487 417 HOH HOH . J 7 HOH A 88 488 387 HOH HOH . J 7 HOH A 89 489 423 HOH HOH . J 7 HOH A 90 490 314 HOH HOH . J 7 HOH A 91 491 399 HOH HOH . J 7 HOH A 92 492 452 HOH HOH . J 7 HOH A 93 493 370 HOH HOH . J 7 HOH A 94 494 400 HOH HOH . J 7 HOH A 95 495 356 HOH HOH . J 7 HOH A 96 496 389 HOH HOH . J 7 HOH A 97 497 438 HOH HOH . J 7 HOH A 98 498 441 HOH HOH . J 7 HOH A 99 499 426 HOH HOH . J 7 HOH A 100 500 412 HOH HOH . J 7 HOH A 101 501 449 HOH HOH . J 7 HOH A 102 502 458 HOH HOH . J 7 HOH A 103 503 453 HOH HOH . J 7 HOH A 104 504 427 HOH HOH . J 7 HOH A 105 505 409 HOH HOH . J 7 HOH A 106 506 396 HOH HOH . J 7 HOH A 107 507 440 HOH HOH . J 7 HOH A 108 508 448 HOH HOH . J 7 HOH A 109 509 418 HOH HOH . J 7 HOH A 110 510 450 HOH HOH . J 7 HOH A 111 511 442 HOH HOH . J 7 HOH A 112 512 459 HOH HOH . J 7 HOH A 113 513 455 HOH HOH . J 7 HOH A 114 514 445 HOH HOH . J 7 HOH A 115 515 413 HOH HOH . J 7 HOH A 116 516 446 HOH HOH . J 7 HOH A 117 517 456 HOH HOH . J 7 HOH A 118 518 443 HOH HOH . J 7 HOH A 119 519 444 HOH HOH . J 7 HOH A 120 520 414 HOH HOH . J 7 HOH A 121 521 447 HOH HOH . K 7 HOH B 1 301 339 HOH HOH . K 7 HOH B 2 302 403 HOH HOH . K 7 HOH B 3 303 425 HOH HOH . K 7 HOH B 4 304 325 HOH HOH . K 7 HOH B 5 305 327 HOH HOH . K 7 HOH B 6 306 428 HOH HOH . K 7 HOH B 7 307 368 HOH HOH . K 7 HOH B 8 308 420 HOH HOH . K 7 HOH B 9 309 371 HOH HOH . K 7 HOH B 10 310 424 HOH HOH . K 7 HOH B 11 311 379 HOH HOH . K 7 HOH B 12 312 352 HOH HOH . K 7 HOH B 13 313 397 HOH HOH . K 7 HOH B 14 314 365 HOH HOH . K 7 HOH B 15 315 326 HOH HOH . K 7 HOH B 16 316 374 HOH HOH . K 7 HOH B 17 317 313 HOH HOH . K 7 HOH B 18 318 392 HOH HOH . K 7 HOH B 19 319 391 HOH HOH . K 7 HOH B 20 320 395 HOH HOH . K 7 HOH B 21 321 451 HOH HOH . K 7 HOH B 22 322 360 HOH HOH . K 7 HOH B 23 323 433 HOH HOH . K 7 HOH B 24 324 384 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -104.581 21.617 -3.975 1 61.78 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . I 5 -103.62 21.486 -2.954 1 54.95 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . I 5 -103.89 21.311 -5.361 1 50.79 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . I 5 -104.545 20.268 -6.055 1 47.86 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . I 5 -104.007 22.642 -6.151 1 58.26 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . I 5 -105.3 22.63 -6.735 1 55.77 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #