data_8RVD # _model_server_result.job_id r01wvhPdmLLcPB-rv-5MWA _model_server_result.datetime_utc '2025-02-23 03:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":303}' # _entry.id 8RVD # _exptl.entry_id 8RVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.8 _cell.angle_gamma 90 _cell.entry_id 8RVD _cell.length_a 129.986 _cell.length_b 151.131 _cell.length_c 135.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 PISA dimeric 2 author_and_software_defined_assembly 7 PISA dimeric 2 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,Q 1 1 C,D,R,S 2 1 E,F 3 1 G,H 4 1 I,J,T,U 5 1 K,L 6 1 M,N,V 7 1 O,P,W,X,Y 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 E CYS 22 1_555 A SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 A SG CYS 143 E CYS 143 1_555 A SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 169 E CYS 169 1_555 B SG CYS 160 H CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 B SG CYS 24 H CYS 24 1_555 B SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf5 B SG CYS 135 H CYS 135 1_555 B SG CYS 185 H CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? disulf ? disulf6 C SG CYS 22 A CYS 22 1_555 C SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf7 C SG CYS 143 A CYS 143 1_555 C SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf8 C SG CYS 169 A CYS 169 1_555 D SG CYS 160 B CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf9 D SG CYS 24 B CYS 24 1_555 D SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf10 E SG CYS 22 C CYS 22 1_555 E SG CYS 91 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf11 E SG CYS 143 C CYS 143 1_555 E SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 E SG CYS 169 C CYS 169 1_555 F SG CYS 160 D CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf13 F SG CYS 24 D CYS 24 1_555 F SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf14 G SG CYS 22 F CYS 22 1_555 G SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 G SG CYS 143 F CYS 143 1_555 G SG CYS 208 F CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf16 G SG CYS 169 F CYS 169 1_555 H SG CYS 160 G CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf17 H SG CYS 24 G CYS 24 1_555 H SG CYS 91 G CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf18 H SG CYS 135 G CYS 135 1_555 H SG CYS 185 G CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? disulf ? disulf19 I SG CYS 22 I CYS 22 1_555 I SG CYS 91 I CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 I SG CYS 143 I CYS 143 1_555 I SG CYS 208 I CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf21 I SG CYS 169 I CYS 169 1_555 J SG CYS 160 J CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf22 J SG CYS 24 J CYS 24 1_555 J SG CYS 91 J CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf23 J SG CYS 135 J CYS 135 1_555 J SG CYS 185 J CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? disulf ? disulf24 K SG CYS 22 K CYS 22 1_555 K SG CYS 91 K CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf25 K SG CYS 143 K CYS 143 1_555 K SG CYS 208 K CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf26 K SG CYS 169 K CYS 169 1_555 L SG CYS 160 L CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf27 L SG CYS 24 L CYS 24 1_555 L SG CYS 91 L CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf28 L SG CYS 135 L CYS 135 1_555 L SG CYS 185 L CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? disulf ? disulf29 M SG CYS 22 M CYS 22 1_555 M SG CYS 91 M CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf30 M SG CYS 143 M CYS 143 1_555 M SG CYS 208 M CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf31 M SG CYS 169 M CYS 169 1_555 N SG CYS 160 N CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf32 N SG CYS 24 N CYS 24 1_555 N SG CYS 91 N CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf33 O SG CYS 22 O CYS 22 1_555 O SG CYS 91 O CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf34 O SG CYS 143 O CYS 143 1_555 O SG CYS 208 O CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf35 O SG CYS 169 O CYS 169 1_555 P SG CYS 160 P CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf36 P SG CYS 24 P CYS 24 1_555 P SG CYS 91 P CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf37 P SG CYS 135 P CYS 135 1_555 P SG CYS 185 P CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8RVD _atom_sites.fract_transf_matrix[1][1] 0.007693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000377 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 PO4 E 1 301 9 PO4 PO4 . R 3 PO4 A 1 301 4 PO4 PO4 . S 3 PO4 B 1 301 10 PO4 PO4 . T 3 PO4 I 1 301 2 PO4 PO4 . U 3 PO4 J 1 301 7 PO4 PO4 . V 3 PO4 M 1 301 5 PO4 PO4 . W 3 PO4 O 1 301 3 PO4 PO4 . X 3 PO4 O 1 302 8 PO4 PO4 . Y 4 EDO O 1 303 3 EDO EDO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Y 4 81.212 8.839 -50.847 1 88.3 ? C1 EDO 303 O 1 HETATM 2 O O1 EDO . . . Y 4 80.239 9.892 -50.892 1 80.87 ? O1 EDO 303 O 1 HETATM 3 C C2 EDO . . . Y 4 80.781 7.424 -51.149 1 87.94 ? C2 EDO 303 O 1 HETATM 4 O O2 EDO . . . Y 4 79.589 6.913 -50.539 1 79.4 ? O2 EDO 303 O 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #