data_8RVW # _model_server_result.job_id Bd9gIusEjMlsEYkFVdnBQQ _model_server_result.datetime_utc '2025-01-09 23:53:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 8RVW # _exptl.entry_id 8RVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-diethyl-8-[(~{E})-2-(4-methoxy-3-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RVW _cell.length_a 40.55 _cell.length_b 182.54 _cell.length_c 143.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 Z NA NA . A NA 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 Z NA NA . A NA 1225 1_555 AA O HOH . A HOH 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 Z NA NA . A NA 1225 1_555 AA O HOH . A HOH 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc4 Z NA NA . A NA 1225 1_555 AA O HOH . A HOH 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? # _chem_comp.formula 'C19 H22 N4 O4' _chem_comp.formula_weight 370.402 _chem_comp.id A1H3H _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-diethyl-8-[(~{E})-2-(4-methoxy-3-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 A1H3H sing 1 n n C13 C12 A1H3H doub 2 n y C13 C14 A1H3H sing 3 n y O1 C14 A1H3H sing 4 n n O1 C15 A1H3H sing 5 n n C12 C11 A1H3H sing 6 n y C14 C16 A1H3H doub 7 n y C11 C17 A1H3H doub 8 n y C11 C10 A1H3H sing 9 n n C16 C17 A1H3H sing 10 n y C10 C9 A1H3H doub 11 e n C3 C4 A1H3H sing 12 n n C3 N1 A1H3H sing 13 n n C9 C8 A1H3H sing 14 n n N3 C8 A1H3H doub 15 n y N3 C5 A1H3H sing 16 n y C8 N2 A1H3H sing 17 n y N1 C5 A1H3H sing 18 n n N1 C2 A1H3H sing 19 n n C5 C6 A1H3H doub 20 n y O C2 A1H3H doub 21 n n N2 C6 A1H3H sing 22 n y N2 C7 A1H3H sing 23 n n C2 N A1H3H sing 24 n n C6 C19 A1H3H sing 25 n n N C19 A1H3H sing 26 n n N C1 A1H3H sing 27 n n C C1 A1H3H sing 28 n n C19 O3 A1H3H doub 29 n n C4 H1 A1H3H sing 30 n n C4 H2 A1H3H sing 31 n n C4 H3 A1H3H sing 32 n n C15 H4 A1H3H sing 33 n n C15 H5 A1H3H sing 34 n n C15 H6 A1H3H sing 35 n n C9 H7 A1H3H sing 36 n n C17 H8 A1H3H sing 37 n n C1 H9 A1H3H sing 38 n n C1 H10 A1H3H sing 39 n n C3 H11 A1H3H sing 40 n n C3 H12 A1H3H sing 41 n n C16 H13 A1H3H sing 42 n n C H14 A1H3H sing 43 n n C H15 A1H3H sing 44 n n C H16 A1H3H sing 45 n n C10 H17 A1H3H sing 46 n n C12 H18 A1H3H sing 47 n n C7 H19 A1H3H sing 48 n n C7 H20 A1H3H sing 49 n n C7 H21 A1H3H sing 50 n n O2 H22 A1H3H sing 51 n n # _atom_sites.entry_id 8RVW _atom_sites.fract_transf_matrix[1][1] 0.024661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 1201 1221 OLA OLA . C 2 OLA A 1 1202 1222 OLA OLA . D 2 OLA A 1 1203 1223 OLA OLA . E 2 OLA A 1 1204 1224 OLA OLA . F 3 A1H3H A 1 1205 1201 A1H3H SS3 . G 4 CLR A 1 1206 1202 CLR CLR . H 4 CLR A 1 1207 1203 CLR CLR . I 4 CLR A 1 1208 1204 CLR CLR . J 2 OLA A 1 1209 1205 OLA OLA . K 2 OLA A 1 1210 1206 OLA OLA . L 2 OLA A 1 1211 1207 OLA OLA . M 2 OLA A 1 1212 1208 OLA OLA . N 2 OLA A 1 1213 1209 OLA OLA . O 2 OLA A 1 1214 1210 OLA OLA . P 2 OLA A 1 1215 1211 OLA OLA . Q 2 OLA A 1 1216 1212 OLA OLA . R 2 OLA A 1 1217 1213 OLA OLA . S 2 OLA A 1 1218 1214 OLA OLA . T 2 OLA A 1 1219 1215 OLA OLA . U 2 OLA A 1 1220 1216 OLA OLA . V 2 OLA A 1 1221 1217 OLA OLA . W 2 OLA A 1 1222 1218 OLA OLA . X 2 OLA A 1 1223 1219 OLA OLA . Y 2 OLA A 1 1224 1220 OLA OLA . Z 5 NA A 1 1225 1 NA NA . AA 6 HOH A 1 1301 44 HOH HOH . AA 6 HOH A 2 1302 36 HOH HOH . AA 6 HOH A 3 1303 31 HOH HOH . AA 6 HOH A 4 1304 14 HOH HOH . AA 6 HOH A 5 1305 48 HOH HOH . AA 6 HOH A 6 1306 21 HOH HOH . AA 6 HOH A 7 1307 23 HOH HOH . AA 6 HOH A 8 1308 9 HOH HOH . AA 6 HOH A 9 1309 18 HOH HOH . AA 6 HOH A 10 1310 1 HOH HOH . AA 6 HOH A 11 1311 12 HOH HOH . AA 6 HOH A 12 1312 5 HOH HOH . AA 6 HOH A 13 1313 32 HOH HOH . AA 6 HOH A 14 1314 41 HOH HOH . AA 6 HOH A 15 1315 4 HOH HOH . AA 6 HOH A 16 1316 20 HOH HOH . AA 6 HOH A 17 1317 22 HOH HOH . AA 6 HOH A 18 1318 10 HOH HOH . AA 6 HOH A 19 1319 3 HOH HOH . AA 6 HOH A 20 1320 16 HOH HOH . AA 6 HOH A 21 1321 49 HOH HOH . AA 6 HOH A 22 1322 8 HOH HOH . AA 6 HOH A 23 1323 51 HOH HOH . AA 6 HOH A 24 1324 33 HOH HOH . AA 6 HOH A 25 1325 13 HOH HOH . AA 6 HOH A 26 1326 27 HOH HOH . AA 6 HOH A 27 1327 6 HOH HOH . AA 6 HOH A 28 1328 2 HOH HOH . AA 6 HOH A 29 1329 50 HOH HOH . AA 6 HOH A 30 1330 17 HOH HOH . AA 6 HOH A 31 1331 25 HOH HOH . AA 6 HOH A 32 1332 11 HOH HOH . AA 6 HOH A 33 1333 19 HOH HOH . AA 6 HOH A 34 1334 35 HOH HOH . AA 6 HOH A 35 1335 34 HOH HOH . AA 6 HOH A 36 1336 15 HOH HOH . AA 6 HOH A 37 1337 28 HOH HOH . AA 6 HOH A 38 1338 7 HOH HOH . AA 6 HOH A 39 1339 47 HOH HOH . AA 6 HOH A 40 1340 24 HOH HOH . AA 6 HOH A 41 1341 37 HOH HOH . AA 6 HOH A 42 1342 40 HOH HOH . AA 6 HOH A 43 1343 38 HOH HOH . AA 6 HOH A 44 1344 39 HOH HOH . AA 6 HOH A 45 1345 30 HOH HOH . AA 6 HOH A 46 1346 45 HOH HOH . AA 6 HOH A 47 1347 42 HOH HOH . AA 6 HOH A 48 1348 43 HOH HOH . AA 6 HOH A 49 1349 29 HOH HOH . AA 6 HOH A 50 1350 46 HOH HOH . AA 6 HOH A 51 1351 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1H3H . . . F 3 -22.932 5.747 17.709 1 55.52 ? N1 A1H3H 1205 A 1 HETATM 2 N N3 A1H3H . . . F 3 -22.085 7.951 17.052 1 56.76 ? N3 A1H3H 1205 A 1 HETATM 3 C C4 A1H3H . . . F 3 -25.331 5.754 17.115 1 74.85 ? C4 A1H3H 1205 A 1 HETATM 4 C C5 A1H3H . . . F 3 -21.992 6.767 17.726 1 58.63 ? C5 A1H3H 1205 A 1 HETATM 5 C C6 A1H3H . . . F 3 -20.874 6.685 18.48 1 56.91 ? C6 A1H3H 1205 A 1 HETATM 6 C C8 A1H3H . . . F 3 -20.982 8.609 17.419 1 70.53 ? C8 A1H3H 1205 A 1 HETATM 7 C C13 A1H3H . . . F 3 -21.754 14.168 14.789 1 99.83 ? C13 A1H3H 1205 A 1 HETATM 8 C C15 A1H3H . . . F 3 -19.153 16.686 15.277 1 106.68 ? C15 A1H3H 1205 A 1 HETATM 9 C C9 A1H3H . . . F 3 -20.617 9.945 16.978 1 69.29 ? C9 A1H3H 1205 A 1 HETATM 10 C C17 A1H3H . . . F 3 -19.924 12.685 16.244 1 79.18 ? C17 A1H3H 1205 A 1 HETATM 11 C C1 A1H3H . . . F 3 -21.318 3.363 20.044 1 47.35 ? C1 A1H3H 1205 A 1 HETATM 12 C C2 A1H3H . . . F 3 -22.649 4.558 18.367 1 52.16 ? C2 A1H3H 1205 A 1 HETATM 13 C C3 A1H3H . . . F 3 -23.914 5.708 16.609 1 49.49 ? C3 A1H3H 1205 A 1 HETATM 14 C C14 A1H3H . . . F 3 -20.544 14.751 15.21 1 100.68 ? C14 A1H3H 1205 A 1 HETATM 15 C C16 A1H3H . . . F 3 -19.631 13.999 15.934 1 83.32 ? C16 A1H3H 1205 A 1 HETATM 16 C C19 A1H3H . . . F 3 -20.584 5.573 19.308 1 49.95 ? C19 A1H3H 1205 A 1 HETATM 17 O O1 A1H3H . . . F 3 -20.367 16.059 14.865 1 102.08 ? O1 A1H3H 1205 A 1 HETATM 18 N N A1H3H . . . F 3 -21.536 4.553 19.201 1 60.22 ? N A1H3H 1205 A 1 HETATM 19 C C A1H3H . . . F 3 -20.893 2.166 19.253 1 57.16 ? C A1H3H 1205 A 1 HETATM 20 O O A1H3H . . . F 3 -23.338 3.565 18.217 1 61.03 ? O A1H3H 1205 A 1 HETATM 21 C C10 A1H3H . . . F 3 -21.416 10.717 16.252 1 67.15 ? C10 A1H3H 1205 A 1 HETATM 22 C C11 A1H3H . . . F 3 -21.12 12.094 15.844 1 74.49 ? C11 A1H3H 1205 A 1 HETATM 23 C C12 A1H3H . . . F 3 -22.03 12.848 15.097 1 88.26 ? C12 A1H3H 1205 A 1 HETATM 24 C C7 A1H3H . . . F 3 -18.945 8.286 18.899 1 52.53 ? C7 A1H3H 1205 A 1 HETATM 25 N N2 A1H3H . . . F 3 -20.212 7.88 18.283 1 68.19 ? N2 A1H3H 1205 A 1 HETATM 26 O O2 A1H3H . . . F 3 -22.594 14.998 14.099 1 83.66 ? O2 A1H3H 1205 A 1 HETATM 27 O O3 A1H3H . . . F 3 -19.629 5.457 20.064 1 60.49 ? O3 A1H3H 1205 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #