data_8RVW # _model_server_result.job_id wWE2UxLUylYIMFJJa_ObpQ _model_server_result.datetime_utc '2025-01-09 23:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1225}' # _entry.id 8RVW # _exptl.entry_id 8RVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RVW _cell.length_a 40.55 _cell.length_b 182.54 _cell.length_c 143.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 Z NA NA . A NA 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 Z NA NA . A NA 1225 1_555 AA O HOH . A HOH 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 Z NA NA . A NA 1225 1_555 AA O HOH . A HOH 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc4 Z NA NA . A NA 1225 1_555 AA O HOH . A HOH 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RVW _atom_sites.fract_transf_matrix[1][1] 0.024661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 1201 1221 OLA OLA . C 2 OLA A 1 1202 1222 OLA OLA . D 2 OLA A 1 1203 1223 OLA OLA . E 2 OLA A 1 1204 1224 OLA OLA . F 3 A1H3H A 1 1205 1201 A1H3H SS3 . G 4 CLR A 1 1206 1202 CLR CLR . H 4 CLR A 1 1207 1203 CLR CLR . I 4 CLR A 1 1208 1204 CLR CLR . J 2 OLA A 1 1209 1205 OLA OLA . K 2 OLA A 1 1210 1206 OLA OLA . L 2 OLA A 1 1211 1207 OLA OLA . M 2 OLA A 1 1212 1208 OLA OLA . N 2 OLA A 1 1213 1209 OLA OLA . O 2 OLA A 1 1214 1210 OLA OLA . P 2 OLA A 1 1215 1211 OLA OLA . Q 2 OLA A 1 1216 1212 OLA OLA . R 2 OLA A 1 1217 1213 OLA OLA . S 2 OLA A 1 1218 1214 OLA OLA . T 2 OLA A 1 1219 1215 OLA OLA . U 2 OLA A 1 1220 1216 OLA OLA . V 2 OLA A 1 1221 1217 OLA OLA . W 2 OLA A 1 1222 1218 OLA OLA . X 2 OLA A 1 1223 1219 OLA OLA . Y 2 OLA A 1 1224 1220 OLA OLA . Z 5 NA A 1 1225 1 NA NA . AA 6 HOH A 1 1301 44 HOH HOH . AA 6 HOH A 2 1302 36 HOH HOH . AA 6 HOH A 3 1303 31 HOH HOH . AA 6 HOH A 4 1304 14 HOH HOH . AA 6 HOH A 5 1305 48 HOH HOH . AA 6 HOH A 6 1306 21 HOH HOH . AA 6 HOH A 7 1307 23 HOH HOH . AA 6 HOH A 8 1308 9 HOH HOH . AA 6 HOH A 9 1309 18 HOH HOH . AA 6 HOH A 10 1310 1 HOH HOH . AA 6 HOH A 11 1311 12 HOH HOH . AA 6 HOH A 12 1312 5 HOH HOH . AA 6 HOH A 13 1313 32 HOH HOH . AA 6 HOH A 14 1314 41 HOH HOH . AA 6 HOH A 15 1315 4 HOH HOH . AA 6 HOH A 16 1316 20 HOH HOH . AA 6 HOH A 17 1317 22 HOH HOH . AA 6 HOH A 18 1318 10 HOH HOH . AA 6 HOH A 19 1319 3 HOH HOH . AA 6 HOH A 20 1320 16 HOH HOH . AA 6 HOH A 21 1321 49 HOH HOH . AA 6 HOH A 22 1322 8 HOH HOH . AA 6 HOH A 23 1323 51 HOH HOH . AA 6 HOH A 24 1324 33 HOH HOH . AA 6 HOH A 25 1325 13 HOH HOH . AA 6 HOH A 26 1326 27 HOH HOH . AA 6 HOH A 27 1327 6 HOH HOH . AA 6 HOH A 28 1328 2 HOH HOH . AA 6 HOH A 29 1329 50 HOH HOH . AA 6 HOH A 30 1330 17 HOH HOH . AA 6 HOH A 31 1331 25 HOH HOH . AA 6 HOH A 32 1332 11 HOH HOH . AA 6 HOH A 33 1333 19 HOH HOH . AA 6 HOH A 34 1334 35 HOH HOH . AA 6 HOH A 35 1335 34 HOH HOH . AA 6 HOH A 36 1336 15 HOH HOH . AA 6 HOH A 37 1337 28 HOH HOH . AA 6 HOH A 38 1338 7 HOH HOH . AA 6 HOH A 39 1339 47 HOH HOH . AA 6 HOH A 40 1340 24 HOH HOH . AA 6 HOH A 41 1341 37 HOH HOH . AA 6 HOH A 42 1342 40 HOH HOH . AA 6 HOH A 43 1343 38 HOH HOH . AA 6 HOH A 44 1344 39 HOH HOH . AA 6 HOH A 45 1345 30 HOH HOH . AA 6 HOH A 46 1346 45 HOH HOH . AA 6 HOH A 47 1347 42 HOH HOH . AA 6 HOH A 48 1348 43 HOH HOH . AA 6 HOH A 49 1349 29 HOH HOH . AA 6 HOH A 50 1350 46 HOH HOH . AA 6 HOH A 51 1351 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Z _atom_site.label_entity_id 5 _atom_site.Cartn_x -23.91 _atom_site.Cartn_y -9.228 _atom_site.Cartn_z 16.475 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1225 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #