data_8RVX # _model_server_result.job_id nJd7v-kLqyBxCQw-mRqX9w _model_server_result.datetime_utc '2025-07-08 02:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 8RVX # _exptl.entry_id 8RVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RVX _cell.length_a 135.873 _cell.length_b 135.873 _cell.length_c 355.644 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 259 A CYS 259 1_555 E CAC CYC . A CYC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale2 B SG CYS 259 B CYS 259 1_555 F CAC CYC . B CYC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale3 C SG CYS 259 C CYS 259 1_555 G CAC CYC . C CYC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale4 D SG CYS 259 D CYS 259 1_555 H CAC CYC . D CYC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 8RVX _atom_sites.fract_transf_matrix[1][1] 0.00736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CYC A 1 601 601 CYC CYC . F 2 CYC B 1 601 601 CYC CYC . G 2 CYC C 1 601 601 CYC CYC . H 2 CYC D 1 601 601 CYC CYC . I 3 HOH A 1 701 602 HOH HOH . J 3 HOH B 1 701 602 HOH HOH . K 3 HOH C 1 701 602 HOH HOH . L 3 HOH D 1 701 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . H 2 23.5 47.264 -0.236 1 78.36 0 CHA CYC 601 D 1 HETATM 2 N NA CYC . . . H 2 23.426 44.779 -0.657 1 78.13 0 NA CYC 601 D 1 HETATM 3 C C1A CYC . . . H 2 23.476 46.104 -1.031 1 78.15 0 C1A CYC 601 D 1 HETATM 4 C C2A CYC . . . H 2 23.527 46.135 -2.407 1 78.02 0 C2A CYC 601 D 1 HETATM 5 C C3A CYC . . . H 2 23.461 44.809 -2.839 1 77.94 0 C3A CYC 601 D 1 HETATM 6 C C4A CYC . . . H 2 23.419 43.979 -1.756 1 78 0 C4A CYC 601 D 1 HETATM 7 C CMA CYC . . . H 2 23.374 44.373 -4.321 1 77.94 0 CMA CYC 601 D 1 HETATM 8 C CAA CYC . . . H 2 23.541 47.459 -3.216 1 78.14 0 CAA CYC 601 D 1 HETATM 9 C CBA CYC . . . H 2 24.652 47.449 -4.354 1 77.79 0 CBA CYC 601 D 1 HETATM 10 C CGA CYC . . . H 2 26.057 47.851 -3.968 1 77.46 0 CGA CYC 601 D 1 HETATM 11 O O1A CYC . . . H 2 26.129 49.07 -3.733 1 77.65 0 O1A CYC 601 D 1 HETATM 12 O O2A CYC . . . H 2 27.011 46.973 -3.998 1 77.14 0 O2A CYC 601 D 1 HETATM 13 C CHB CYC . . . H 2 23.329 42.573 -1.665 1 78.06 0 CHB CYC 601 D 1 HETATM 14 N NB CYC . . . H 2 24.972 41.94 -3.369 1 77.51 0 NB CYC 601 D 1 HETATM 15 C C1B CYC . . . H 2 24.005 41.646 -2.45 1 77.85 0 C1B CYC 601 D 1 HETATM 16 C C2B CYC . . . H 2 23.881 40.273 -2.454 1 78.03 0 C2B CYC 601 D 1 HETATM 17 C C3B CYC . . . H 2 24.748 39.742 -3.375 1 77.81 0 C3B CYC 601 D 1 HETATM 18 C C4B CYC . . . H 2 25.439 40.787 -3.939 1 77.49 0 C4B CYC 601 D 1 HETATM 19 C CMB CYC . . . H 2 22.89 39.504 -1.532 1 78.54 0 CMB CYC 601 D 1 HETATM 20 C CAB CYC . . . H 2 24.942 38.236 -3.734 1 78.03 0 CAB CYC 601 D 1 HETATM 21 C CBB CYC . . . H 2 24.284 37.956 -5.136 1 78.28 0 CBB CYC 601 D 1 HETATM 22 O OB CYC . . . H 2 26.318 40.766 -4.817 1 77.3 0 OB CYC 601 D 1 HETATM 23 N NC CYC . . . H 2 23.06 44.155 4.113 1 79.35 0 NC CYC 601 D 1 HETATM 24 C C1C CYC . . . H 2 23.014 42.903 4.674 1 79.58 0 C1C CYC 601 D 1 HETATM 25 C C2C CYC . . . H 2 22.356 43.001 6.067 1 80.34 0 C2C CYC 601 D 1 HETATM 26 C C3C CYC . . . H 2 22.095 44.544 6.228 1 80.48 0 C3C CYC 601 D 1 HETATM 27 C C4C CYC . . . H 2 22.558 45.141 4.883 1 79.81 0 C4C CYC 601 D 1 HETATM 28 C CMC CYC . . . H 2 21.074 42.188 6.107 1 80.9 0 CMC CYC 601 D 1 HETATM 29 C CAC CYC . . . H 2 22.829 45.099 7.454 1 80.78 0 CAC CYC 601 D 1 HETATM 30 C CBC CYC . . . H 2 22.559 44.656 8.847 1 81.56 0 CBC CYC 601 D 1 HETATM 31 O OC CYC . . . H 2 23.482 41.868 4.132 1 79.31 0 OC CYC 601 D 1 HETATM 32 C CHD CYC . . . H 2 22.489 46.475 4.551 1 79.8 0 CHD CYC 601 D 1 HETATM 33 N ND CYC . . . H 2 22.942 46.478 2.116 1 78.92 0 ND CYC 601 D 1 HETATM 34 C C1D CYC . . . H 2 22.846 47.077 3.34 1 79.34 0 C1D CYC 601 D 1 HETATM 35 C C2D CYC . . . H 2 23.129 48.416 3.151 1 79.37 0 C2D CYC 601 D 1 HETATM 36 C C3D CYC . . . H 2 23.399 48.658 1.838 1 78.99 0 C3D CYC 601 D 1 HETATM 37 C C4D CYC . . . H 2 23.269 47.432 1.16 1 78.7 0 C4D CYC 601 D 1 HETATM 38 C CMD CYC . . . H 2 23.15 49.49 4.263 1 79.9 0 CMD CYC 601 D 1 HETATM 39 C CAD CYC . . . H 2 23.753 50.032 1.211 1 79.01 0 CAD CYC 601 D 1 HETATM 40 C CBD CYC . . . H 2 25.287 50.297 1.204 1 78.61 0 CBD CYC 601 D 1 HETATM 41 C CGD CYC . . . H 2 25.509 51.738 0.603 1 78.81 0 CGD CYC 601 D 1 HETATM 42 O O1D CYC . . . H 2 25.717 52.677 1.416 1 79.19 0 O1D CYC 601 D 1 HETATM 43 O O2D CYC . . . H 2 25.44 51.852 -0.665 1 78.68 0 O2D CYC 601 D 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #