data_8RW0 # _model_server_result.job_id icjrIJ0T-e8rn8Dy9GFpPA _model_server_result.datetime_utc '2025-01-09 22:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8RW0 # _exptl.entry_id 8RW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RW0 _cell.length_a 39.333 _cell.length_b 179.345 _cell.length_c 139.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 CA NA NA . A NA 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 CA NA NA . A NA 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc3 CA NA NA . A NA 1228 1_555 DA O HOH . A HOH 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 CA NA NA . A NA 1228 1_555 DA O HOH . A HOH 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc5 CA NA NA . A NA 1228 1_555 DA O HOH . A HOH 1383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? # _chem_comp.formula 'C20 H24 N4 O4' _chem_comp.formula_weight 384.429 _chem_comp.id JQ9 _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms istradefylline # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 JQ9 sing 250 n n C12 C11 JQ9 sing 251 n n O2 C2 JQ9 doub 252 n n C21 N3 JQ9 sing 253 n n C2 N3 JQ9 sing 254 n n C2 N1 JQ9 sing 255 n n C11 N1 JQ9 sing 256 n n N3 C4 JQ9 sing 257 n n N1 C6 JQ9 sing 258 n n C4 N9 JQ9 sing 259 n y C4 C5 JQ9 doub 260 n y C6 C5 JQ9 sing 261 n n C6 O6 JQ9 doub 262 n n N9 C8 JQ9 doub 263 n y C5 N7 JQ9 sing 264 n y C8 N7 JQ9 sing 265 n y C8 CA JQ9 sing 266 n n N7 C7 JQ9 sing 267 n n CB CA JQ9 doub 268 e n CB C1' JQ9 sing 269 n n C2' C1' JQ9 doub 270 n y C2' C3' JQ9 sing 271 n y C9' O3' JQ9 sing 272 n n C1' C6' JQ9 sing 273 n y O3' C3' JQ9 sing 274 n n C3' C4' JQ9 doub 275 n y C6' C5' JQ9 doub 276 n y C4' C5' JQ9 sing 277 n y C4' O4' JQ9 sing 278 n n O4' C8' JQ9 sing 279 n n C12 H1 JQ9 sing 280 n n C12 H2 JQ9 sing 281 n n C12 H3 JQ9 sing 282 n n C21 H4 JQ9 sing 283 n n C21 H5 JQ9 sing 284 n n C22 H6 JQ9 sing 285 n n C22 H7 JQ9 sing 286 n n C22 H8 JQ9 sing 287 n n C7 H9 JQ9 sing 288 n n C7 H10 JQ9 sing 289 n n C7 H11 JQ9 sing 290 n n C11 H12 JQ9 sing 291 n n C11 H13 JQ9 sing 292 n n CA H14 JQ9 sing 293 n n CB H15 JQ9 sing 294 n n C6' H16 JQ9 sing 295 n n C5' H17 JQ9 sing 296 n n C8' H18 JQ9 sing 297 n n C8' H19 JQ9 sing 298 n n C8' H20 JQ9 sing 299 n n C2' H21 JQ9 sing 300 n n C9' H22 JQ9 sing 301 n n C9' H23 JQ9 sing 302 n n C9' H24 JQ9 sing 303 n n # _atom_sites.entry_id 8RW0 _atom_sites.fract_transf_matrix[1][1] 0.025424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQ9 A 1 1201 1201 JQ9 IST . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 4 OLA A 1 1204 1204 OLA OLA . F 4 OLA A 1 1205 1205 OLA OLA . G 3 CLR A 1 1206 1206 CLR CLR . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1209 OLA OLA . K 4 OLA A 1 1210 1210 OLA OLA . L 4 OLA A 1 1211 1211 OLA OLA . M 4 OLA A 1 1212 1212 OLA OLA . N 4 OLA A 1 1213 1213 OLA OLA . O 4 OLA A 1 1214 1215 OLA OLA . P 4 OLA A 1 1215 1216 OLA OLA . Q 4 OLA A 1 1216 1217 OLA OLA . R 4 OLA A 1 1217 1218 OLA OLA . S 4 OLA A 1 1218 1219 OLA OLA . T 4 OLA A 1 1219 1220 OLA OLA . U 4 OLA A 1 1220 1221 OLA OLA . V 4 OLA A 1 1221 1222 OLA OLA . W 4 OLA A 1 1222 1223 OLA OLA . X 4 OLA A 1 1223 1224 OLA OLA . Y 4 OLA A 1 1224 1225 OLA OLA . Z 4 OLA A 1 1225 1226 OLA OLA . AA 4 OLA A 1 1226 1227 OLA OLA . BA 4 OLA A 1 1227 1228 OLA OLA . CA 5 NA A 1 1228 1 NA NA . DA 6 HOH A 1 1301 75 HOH HOH . DA 6 HOH A 2 1302 114 HOH HOH . DA 6 HOH A 3 1303 76 HOH HOH . DA 6 HOH A 4 1304 82 HOH HOH . DA 6 HOH A 5 1305 40 HOH HOH . DA 6 HOH A 6 1306 63 HOH HOH . DA 6 HOH A 7 1307 65 HOH HOH . DA 6 HOH A 8 1308 38 HOH HOH . DA 6 HOH A 9 1309 108 HOH HOH . DA 6 HOH A 10 1310 35 HOH HOH . DA 6 HOH A 11 1311 12 HOH HOH . DA 6 HOH A 12 1312 47 HOH HOH . DA 6 HOH A 13 1313 52 HOH HOH . DA 6 HOH A 14 1314 67 HOH HOH . DA 6 HOH A 15 1315 78 HOH HOH . DA 6 HOH A 16 1316 7 HOH HOH . DA 6 HOH A 17 1317 4 HOH HOH . DA 6 HOH A 18 1318 1 HOH HOH . DA 6 HOH A 19 1319 54 HOH HOH . DA 6 HOH A 20 1320 37 HOH HOH . DA 6 HOH A 21 1321 8 HOH HOH . DA 6 HOH A 22 1322 18 HOH HOH . DA 6 HOH A 23 1323 29 HOH HOH . DA 6 HOH A 24 1324 2 HOH HOH . DA 6 HOH A 25 1325 58 HOH HOH . DA 6 HOH A 26 1326 115 HOH HOH . DA 6 HOH A 27 1327 60 HOH HOH . DA 6 HOH A 28 1328 62 HOH HOH . DA 6 HOH A 29 1329 26 HOH HOH . DA 6 HOH A 30 1330 9 HOH HOH . DA 6 HOH A 31 1331 48 HOH HOH . DA 6 HOH A 32 1332 30 HOH HOH . DA 6 HOH A 33 1333 43 HOH HOH . DA 6 HOH A 34 1334 15 HOH HOH . DA 6 HOH A 35 1335 34 HOH HOH . DA 6 HOH A 36 1336 19 HOH HOH . DA 6 HOH A 37 1337 25 HOH HOH . DA 6 HOH A 38 1338 57 HOH HOH . DA 6 HOH A 39 1339 22 HOH HOH . DA 6 HOH A 40 1340 103 HOH HOH . DA 6 HOH A 41 1341 66 HOH HOH . DA 6 HOH A 42 1342 98 HOH HOH . DA 6 HOH A 43 1343 11 HOH HOH . DA 6 HOH A 44 1344 61 HOH HOH . DA 6 HOH A 45 1345 6 HOH HOH . DA 6 HOH A 46 1346 72 HOH HOH . DA 6 HOH A 47 1347 32 HOH HOH . DA 6 HOH A 48 1348 28 HOH HOH . DA 6 HOH A 49 1349 39 HOH HOH . DA 6 HOH A 50 1350 112 HOH HOH . DA 6 HOH A 51 1351 87 HOH HOH . DA 6 HOH A 52 1352 16 HOH HOH . DA 6 HOH A 53 1353 17 HOH HOH . DA 6 HOH A 54 1354 51 HOH HOH . DA 6 HOH A 55 1355 69 HOH HOH . DA 6 HOH A 56 1356 80 HOH HOH . DA 6 HOH A 57 1357 74 HOH HOH . DA 6 HOH A 58 1358 46 HOH HOH . DA 6 HOH A 59 1359 89 HOH HOH . DA 6 HOH A 60 1360 24 HOH HOH . DA 6 HOH A 61 1361 42 HOH HOH . DA 6 HOH A 62 1362 5 HOH HOH . DA 6 HOH A 63 1363 23 HOH HOH . DA 6 HOH A 64 1364 20 HOH HOH . DA 6 HOH A 65 1365 107 HOH HOH . DA 6 HOH A 66 1366 59 HOH HOH . DA 6 HOH A 67 1367 118 HOH HOH . DA 6 HOH A 68 1368 73 HOH HOH . DA 6 HOH A 69 1369 3 HOH HOH . DA 6 HOH A 70 1370 49 HOH HOH . DA 6 HOH A 71 1371 81 HOH HOH . DA 6 HOH A 72 1372 97 HOH HOH . DA 6 HOH A 73 1373 31 HOH HOH . DA 6 HOH A 74 1374 99 HOH HOH . DA 6 HOH A 75 1375 27 HOH HOH . DA 6 HOH A 76 1376 33 HOH HOH . DA 6 HOH A 77 1377 41 HOH HOH . DA 6 HOH A 78 1378 79 HOH HOH . DA 6 HOH A 79 1379 90 HOH HOH . DA 6 HOH A 80 1380 109 HOH HOH . DA 6 HOH A 81 1381 10 HOH HOH . DA 6 HOH A 82 1382 88 HOH HOH . DA 6 HOH A 83 1383 21 HOH HOH . DA 6 HOH A 84 1384 53 HOH HOH . DA 6 HOH A 85 1385 64 HOH HOH . DA 6 HOH A 86 1386 36 HOH HOH . DA 6 HOH A 87 1387 77 HOH HOH . DA 6 HOH A 88 1388 13 HOH HOH . DA 6 HOH A 89 1389 92 HOH HOH . DA 6 HOH A 90 1390 93 HOH HOH . DA 6 HOH A 91 1391 14 HOH HOH . DA 6 HOH A 92 1392 96 HOH HOH . DA 6 HOH A 93 1393 101 HOH HOH . DA 6 HOH A 94 1394 56 HOH HOH . DA 6 HOH A 95 1395 84 HOH HOH . DA 6 HOH A 96 1396 113 HOH HOH . DA 6 HOH A 97 1397 102 HOH HOH . DA 6 HOH A 98 1398 105 HOH HOH . DA 6 HOH A 99 1399 50 HOH HOH . DA 6 HOH A 100 1400 85 HOH HOH . DA 6 HOH A 101 1401 44 HOH HOH . DA 6 HOH A 102 1402 83 HOH HOH . DA 6 HOH A 103 1403 86 HOH HOH . DA 6 HOH A 104 1404 104 HOH HOH . DA 6 HOH A 105 1405 117 HOH HOH . DA 6 HOH A 106 1406 110 HOH HOH . DA 6 HOH A 107 1407 120 HOH HOH . DA 6 HOH A 108 1408 111 HOH HOH . DA 6 HOH A 109 1409 106 HOH HOH . DA 6 HOH A 110 1410 119 HOH HOH . DA 6 HOH A 111 1411 68 HOH HOH . DA 6 HOH A 112 1412 116 HOH HOH . DA 6 HOH A 113 1413 91 HOH HOH . DA 6 HOH A 114 1414 95 HOH HOH . DA 6 HOH A 115 1415 70 HOH HOH . DA 6 HOH A 116 1416 71 HOH HOH . DA 6 HOH A 117 1417 45 HOH HOH . DA 6 HOH A 118 1418 55 HOH HOH . DA 6 HOH A 119 1419 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JQ9 . . . B 2 1.532 4.264 121.368 1 23.05 ? N1 JQ9 1201 A 1 HETATM 2 C C12 JQ9 . . . B 2 0.395 2.104 121.065 1 32.85 ? C12 JQ9 1201 A 1 HETATM 3 O O2 JQ9 . . . B 2 3.333 3.262 122.392 1 29.14 ? O2 JQ9 1201 A 1 HETATM 4 C C2 JQ9 . . . B 2 2.628 4.247 122.235 1 26.48 ? C2 JQ9 1201 A 1 HETATM 5 N N3 JQ9 . . . B 2 2.875 5.418 122.908 1 21.46 ? N3 JQ9 1201 A 1 HETATM 6 C C21 JQ9 . . . B 2 3.949 5.43 123.921 1 21.97 ? C21 JQ9 1201 A 1 HETATM 7 C C22 JQ9 . . . B 2 5.273 5.796 123.299 1 28.97 ? C22 JQ9 1201 A 1 HETATM 8 C C4 JQ9 . . . B 2 2.004 6.478 122.842 1 19.46 ? C4 JQ9 1201 A 1 HETATM 9 N N9 JQ9 . . . B 2 2.152 7.671 123.478 1 21.73 ? N9 JQ9 1201 A 1 HETATM 10 C C8 JQ9 . . . B 2 1.063 8.346 123.128 1 19.76 ? C8 JQ9 1201 A 1 HETATM 11 N N7 JQ9 . . . B 2 0.254 7.634 122.283 1 17.21 ? N7 JQ9 1201 A 1 HETATM 12 C C7 JQ9 . . . B 2 -1.003 8.089 121.689 1 15.39 ? C7 JQ9 1201 A 1 HETATM 13 C C5 JQ9 . . . B 2 0.882 6.419 122.098 1 21.05 ? C5 JQ9 1201 A 1 HETATM 14 C C6 JQ9 . . . B 2 0.564 5.288 121.284 1 20.69 ? C6 JQ9 1201 A 1 HETATM 15 O O6 JQ9 . . . B 2 -0.435 5.152 120.603 1 18.57 ? O6 JQ9 1201 A 1 HETATM 16 C C11 JQ9 . . . B 2 1.331 3.085 120.492 1 20.83 ? C11 JQ9 1201 A 1 HETATM 17 C CA JQ9 . . . B 2 0.713 9.649 123.643 1 21.87 ? CA JQ9 1201 A 1 HETATM 18 C CB JQ9 . . . B 2 1.517 10.31 124.437 1 25.67 ? CB JQ9 1201 A 1 HETATM 19 C C1' JQ9 . . . B 2 1.335 11.638 125 1 30.35 ? C1' JQ9 1201 A 1 HETATM 20 C C6' JQ9 . . . B 2 0.243 12.449 124.703 1 30.38 ? C6' JQ9 1201 A 1 HETATM 21 C C5' JQ9 . . . B 2 0.21 13.776 125.1 1 40.52 ? C5' JQ9 1201 A 1 HETATM 22 C C4' JQ9 . . . B 2 1.29 14.309 125.794 1 44.22 ? C4' JQ9 1201 A 1 HETATM 23 O O4' JQ9 . . . B 2 1.384 15.612 126.197 1 49.63 ? O4' JQ9 1201 A 1 HETATM 24 C C8' JQ9 . . . B 2 0.224 16.434 126.041 1 47.51 ? C8' JQ9 1201 A 1 HETATM 25 C C3' JQ9 . . . B 2 2.386 13.488 126.125 1 34.14 ? C3' JQ9 1201 A 1 HETATM 26 C C2' JQ9 . . . B 2 2.384 12.162 125.758 1 31.48 ? C2' JQ9 1201 A 1 HETATM 27 O O3' JQ9 . . . B 2 3.421 14.102 126.768 1 37.99 ? O3' JQ9 1201 A 1 HETATM 28 C C9' JQ9 . . . B 2 4.494 13.276 127.227 1 38.18 ? C9' JQ9 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #